Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009694

Physical Location & Seq

Genomic Coordinates Forward (+)

2195531 .. 2198507

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04030.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGTTTACAAGTTTATATATACATATTTACATACTACTATCTCTATACATGAGTTACTCCCAGAGCAGAAGAGAGAAACAAACTGTCTGCAGCAATATGATGACCCTTCTCTTGTTCATGTTCACTTTCATGTTGCCCATTGCAACATGTGGATTTAGCATCCAGCTCATACCAATCGATTCTGTTATCCTCCCAACTAATCACACTCCTGAAGAAAGGCATAACCTACTTGCTAATATATCAAGAAATCGAGCCCTCAACCTCATGTCCATGAGTGCAGCAAGAGCAATGAACCCAAAAGAGGAGTTCGTGAAGGGTGTGCCTAATACCATACAACCCCCCATTTATCGAGTTCTAAGTAATTACTATGTGACTCGAATGGTCATTGGCTCACGACTATATACACCCTACTTAATGGTGGACACAGGCAGTGCTGACACATGGGTTCAATGTGATGGATGCCGCAATTGCTTTCCAATACAGGGAGGAAATTTCAAATATAATGAGTCTACAACATACAAATATCTACCTTGTAAGAACCCACTTTGTGTGCCAAAACTATGTGATAGTGCAGGGGTGTGTCTCTACAGGAATCTGTACAGTGGCGGAAGCAAATCTGAAGGTTGGGTTTCTAGTGATACCTTCCTTTTCTCAAGCACTAACCATACCTCTATGAAGTTGCCAGTAGCATTTGGTTGTGGCTATGATAACCAGAATATGAGTTTTGGTCACAATGATGGACCTAGTAATCCTATAGCTGGCATATTTGGATTAGGTATTGGGACGAGGTCAATCCTAAAACAACTAGGTAAGGAGACCAACCAGCGCTTCTCTTACTGCCTACCATCATCCAGAACATCTAGACAAACTCATACAATGATAAGCTTTGGTGAGGATGCACAAATAAAGGGAAGTGTACAGACAATACAGATTTTGCCTGCAGAAAATACGCCTGCTTACAATGTCAAACTTTTGGGTATTAGCATTGCAGGAAAGCGTCTTAATATAGATCCAGCATTGTTCCAGCTGAAGCGTAGCACTATTGGTGGATTTTTCATAGACACAGGTAGTCCTTACACTAGGCTTGTTCAAGGTGCATACACAATTTTGAGGGATGAAATGACTCAGTATATTATGAAGAATTATGGGAAGCGTCCAACAAGGAAAGGTTTTTTTGATCTTTGTTATGGGTCACTAGGAGGGAATGTGACTTTACCATCAATGACATACCACTTCAAAGGGGCAAATCTTGTACTGAATTCAGGGGCTGTGTTTGAGCGATTTGGTTTTGATCTCTGCATGGCTATATTGCCTGCTAGCAATGCAGGACAAAACCTCCTGGGGGCCTTTCAGCAGGCAAATCATCGTTTTTTGTTTGATGTAGGAAAGAAATCCATGCTTGTTAAAAAGTATACAGTGTCATTTGCACCAGAGATATGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

482

Amino Acids

53.62

Weight (kDa)

9.29

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	123 - 297	5.7e-32	Xylanase inhibitor N-terminal
Asp	PF00026	123 - 464	4.1e-09	Eukaryotic aspartyl protease
TAXi_C	PF14541	319 - 466	1.7e-24	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04020 FvH4_6g04030 FvH4_6g04030 FvH4_6g04030 FvH4_6g04040
rosa_chinensis	RchiOBHm_Chr3g0452601
rosa_laevigata	RLG00000025579 RLG00000025580 RLG00000025590 RLG00000025592
rosa_roxburghii	Rroxscaffold_6G00429640
rosa_rugosa	Rorug02G0641600
rosa_samantha	Rh3BG045500 Rh3BG046300 Rh3BG046400 Rh3CG044100 Rh3CG045000 Rh3CG045100 Rh3DG044800 Rh3DG045300 Rh3DG045400
rosa_wichuraiana	Rw3G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	509, 1412
AciI	CCGC	2 cut(s)	463, 606
AclWI	GGATC	1 cut(s)	1004
AcsI	RAATTY	2 cut(s)	490, 1258
AcuI	CTGAAG	3 cut(s)	231, 639, 1049
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	3 cut(s)	599, 918, 1254
AfeI	AGCGCT	1 cut(s)	827
AfiI	CCNNNNNNNGG	4 cut(s)	301, 482, 758, 1342
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	449, 496, 1091, 1237
AjnI	CCWGG	1 cut(s)	1338
AjuI	GAANNNNNNNTTGG	2 cut(s)	812, 844
AluBI	AGCT	4 cut(s)	166, 758, 885, 1027
AluI	AGCT	4 cut(s)	166, 758, 885, 1027
Alw26I	GTCTC	2 cut(s)	587, 809
AlwI	GGATC	1 cut(s)	1004
AlwNI	CAGNNNCTG	1 cut(s)	1268
Aor51HI	AGCGCT	1 cut(s)	827
AoxI	GGCC	1 cut(s)	1344
ApeKI	GCWGC	2 cut(s)	90, 278
ApoI	RAATTY	2 cut(s)	490, 1258
AspLEI	GCGC	1 cut(s)	828
AspS9I	GGNCC	2 cut(s)	740, 1344
AsuHPI	GGTGA	1 cut(s)	902
AsuNHI	GCTAGC	1 cut(s)	1316
AvaII	GGWCC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	102, 290
BccI	CCATC	4 cut(s)	449, 731, 853, 1225
BciT130I	CCWGG	1 cut(s)	1340
BcoDI	GTCTC	2 cut(s)	587, 809
BfaI	CTAG	7 cut(s)	633, 744, 806, 861, 1080, 1196, 1317
BfmI	CTRYAG	4 cut(s)	88, 586, 753, 939
BfoI	RGCGCY	1 cut(s)	829
BisI	GCNGC	3 cut(s)	91, 279, 463
BlsI	GCNGC	3 cut(s)	92, 280, 464
Bme1390I	CCNGG	1 cut(s)	1340
Bme18I	GGWCC	1 cut(s)	740
BmgT120I	GGNCC	2 cut(s)	740, 1344
BmiI	GGNNCC	1 cut(s)	1345
BmrFI	CCNGG	1 cut(s)	1340
BmsI	GCATC	3 cut(s)	168, 449, 886
BmtI	GCTAGC	1 cut(s)	1320
BpuEI	CTTGAG	1 cut(s)	637
Bsa29I	ATCGAT	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	809
BsaJI	CCNNGG	1 cut(s)	1339
BsaXI	ACNNNNNCTCC	4 cut(s)	1191, 1221, 1320, 1350
Bsc4I	CCNNNNNNNGG	4 cut(s)	301, 482, 758, 1342
Bse1I	ACTGG	1 cut(s)	683
Bse3DI	GCAATG	4 cut(s)	138, 294, 984, 1327
BseBI	CCWGG	1 cut(s)	1340
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	1339
BseGI	GGATG	5 cut(s)	159, 464, 848, 901, 1120
BseLI	CCNNNNNNNGG	4 cut(s)	301, 482, 758, 1342
BseMI	GCAATG	4 cut(s)	138, 294, 984, 1327
BseMII	CTCAG	1 cut(s)	1139
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	102, 290
BsgI	GTGCAG	2 cut(s)	297, 591
BshFI	GGCC	1 cut(s)	1346
BshVI	ATCGAT	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	796
BslI	CCNNNNNNNGG	4 cut(s)	301, 482, 758, 1342
BsmAI	GTCTC	2 cut(s)	587, 809
BsmFI	GGGAC	1 cut(s)	796
BsnI	GGCC	1 cut(s)	1346
Bso31I	GGTCTC	1 cut(s)	809
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp1407I	TGTACA	2 cut(s)	597, 916
Bsp143I	GATC	3 cut(s)	1009, 1177, 1291
BspACI	CCGC	2 cut(s)	463, 606
BspANI	GGCC	1 cut(s)	1346
BspCNI	CTCAG	1 cut(s)	1138
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	1345
BspMAI	CTGCAG	2 cut(s)	92, 943
BspOI	GCTAGC	1 cut(s)	1320
BspPI	GGATC	1 cut(s)	1004
BspTNI	GGTCTC	1 cut(s)	809
BsrDI	GCAATG	4 cut(s)	138, 294, 984, 1327
BsrGI	TGTACA	2 cut(s)	597, 916
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	1 cut(s)	1339
BssMI	GATC	3 cut(s)	1009, 1177, 1291
BssNAI	GTATAC	1 cut(s)	1413
Bst1107I	GTATAC	1 cut(s)	1413
Bst2UI	CCWGG	1 cut(s)	1340
Bst4CI	ACNGT	3 cut(s)	85, 602, 1417
Bst6I	CTCTTC	1 cut(s)	64
BstAUI	TGTACA	2 cut(s)	597, 916
BstC8I	GCNNGC	6 cut(s)	760, 939, 954, 1314, 1318, 1356
BstDEI	CTNAG	2 cut(s)	356, 1125
BstF5I	GGATG	5 cut(s)	159, 464, 848, 901, 1120
BstH2I	RGCGCY	1 cut(s)	829
BstHHI	GCGC	1 cut(s)	828
BstKTI	GATC	3 cut(s)	1012, 1180, 1294
BstMAI	GTCTC	2 cut(s)	587, 809
BstMBI	GATC	3 cut(s)	1009, 1177, 1291
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 468, 1322
BstNI	CCWGG	1 cut(s)	1340
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	1338
BstSFI	CTRYAG	4 cut(s)	88, 586, 753, 939
BstV1I	GCAGC	2 cut(s)	102, 290
BstX2I	RGATCY	1 cut(s)	1009
BstYI	RGATCY	1 cut(s)	1009
BstZ17I	GTATAC	1 cut(s)	1413
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	1346
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	5 cut(s)	159, 464, 848, 901, 1120
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	3 cut(s)	436, 607, 1422
Cac8I	GCNNGC	6 cut(s)	760, 939, 954, 1314, 1318, 1356
CaiI	CAGNNNCTG	1 cut(s)	1268
CfoI	GCGC	1 cut(s)	828
Cfr13I	GGNCC	2 cut(s)	740, 1344
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	2 cut(s)	986, 1142
Csp6I	GTAC	3 cut(s)	598, 917, 1253
CviAII	CATG	9 cut(s)	49, 118, 130, 147, 265, 271, 441, 1300, 1396
CviQI	GTAC	3 cut(s)	598, 917, 1253
DdeI	CTNAG	2 cut(s)	356, 1125
DpnI	GATC	3 cut(s)	1011, 1179, 1293
DpnII	GATC	3 cut(s)	1009, 1177, 1291
DraIII	CACNNNGTG	1 cut(s)	548
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	809
Eco47I	GGWCC	1 cut(s)	740
Eco47III	AGCGCT	1 cut(s)	827
Eco57I	CTGAAG	3 cut(s)	231, 639, 1049
EcoO109I	RGGNCCY	1 cut(s)	1344
EcoRI	GAATTC	1 cut(s)	1258
EcoRII	CCWGG	1 cut(s)	1338
EcoT38I	GRGCYC	1 cut(s)	256
FaeI	CATG	9 cut(s)	52, 121, 133, 150, 268, 274, 444, 1303, 1399
FaqI	GGGAC	1 cut(s)	796
FatI	CATG	9 cut(s)	48, 117, 129, 146, 264, 270, 440, 1299, 1395
FblI	GTMKAC	2 cut(s)	509, 1412
Fnu4HI	GCNGC	3 cut(s)	91, 279, 463
FokI	GGATG	5 cut(s)	146, 471, 835, 908, 1127
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	3 cut(s)	91, 279, 463
FspBI	CTAG	7 cut(s)	633, 744, 806, 861, 1080, 1196, 1317
GlaI	GCGC	1 cut(s)	827
GluI	GCNGC	3 cut(s)	91, 279, 463
HaeII	RGCGCY	1 cut(s)	829
HaeIII	GGCC	1 cut(s)	1346
HgaI	GACGC	2 cut(s)	986, 1142
HhaI	GCGC	1 cut(s)	828
Hin1II	CATG	9 cut(s)	52, 121, 133, 150, 268, 274, 444, 1303, 1399
Hin6I	GCGC	1 cut(s)	826
HinP1I	GCGC	1 cut(s)	826
HindIII	AAGCTT	1 cut(s)	883
HinfI	GANTC	5 cut(s)	179, 373, 506, 592, 1123
HphI	GGTGA	1 cut(s)	902
Hpy166II	GTNNAC	6 cut(s)	6, 123, 421, 510, 917, 1413
Hpy188I	TCNGA	1 cut(s)	619
Hpy188III	TCNNGA	6 cut(s)	209, 243, 310, 393, 852, 861
Hpy8I	GTNNAC	6 cut(s)	6, 123, 421, 510, 917, 1413
HpyAV	CCTTC	4 cut(s)	116, 307, 614, 652
HpyCH4III	ACNGT	3 cut(s)	85, 602, 1417
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 468, 1322
HpyF3I	CTNAG	2 cut(s)	356, 1125
Hsp92II	CATG	9 cut(s)	52, 121, 133, 150, 268, 274, 444, 1303, 1399
HspAI	GCGC	1 cut(s)	826
Kzo9I	GATC	3 cut(s)	1009, 1177, 1291
Lsp1109I	GCAGC	2 cut(s)	102, 290
LweI	GCATC	3 cut(s)	168, 449, 886
MaeI	CTAG	7 cut(s)	633, 744, 806, 861, 1080, 1196, 1317
MaeIII	GTNAC	5 cut(s)	53, 370, 728, 1191, 1207
MalI	GATC	3 cut(s)	1011, 1179, 1293
MboI	GATC	3 cut(s)	1009, 1177, 1291
MboII	GAAGA	3 cut(s)	81, 224, 1150
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	1 cut(s)	1009
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	6 cut(s)	361, 466, 490, 1104, 1141, 1258
MlyI	GAGTC	3 cut(s)	367, 515, 1117
MmeI	TCCRAC	1 cut(s)	1181
MseI	TTAA	4 cut(s)	413, 1002, 1404, 1444
MslI	CAYNNNNRTG	3 cut(s)	128, 269, 735
MspA1I	CMGCKG	1 cut(s)	1027
MspR9I	CCNGG	1 cut(s)	1340
MunI	CAATTG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	1340
MwoI	GCNNNNNNNGC	3 cut(s)	284, 468, 1322
NdeII	GATC	3 cut(s)	1009, 1177, 1291
NheI	GCTAGC	1 cut(s)	1316
NlaIII	CATG	9 cut(s)	52, 121, 133, 150, 268, 274, 444, 1303, 1399
NlaIV	GGNNCC	1 cut(s)	1345
NmuCI	GTSAC	4 cut(s)	370, 728, 1191, 1207
NspI	RCATGY	1 cut(s)	150
PciI	ACATGT	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	179, 592
PflFI	GACNNNGTC	1 cut(s)	787
PkrI	GCNGC	3 cut(s)	92, 280, 464
PleI	GAGTC	3 cut(s)	367, 514, 1117
PpsI	GAGTC	3 cut(s)	367, 514, 1117
PscI	ACATGT	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	1338
PspGI	CCWGG	1 cut(s)	1338
PspN4I	GGNNCC	1 cut(s)	1345
PspPI	GGNCC	2 cut(s)	740, 1344
PstI	CTGCAG	2 cut(s)	92, 943
PstNI	CAGNNNCTG	1 cut(s)	1268
PsuI	RGATCY	1 cut(s)	1009
PsyI	GACNNNGTC	1 cut(s)	787
PvuII	CAGCTG	1 cut(s)	1027
RsaI	GTAC	3 cut(s)	599, 918, 1254
RsaNI	GTAC	3 cut(s)	598, 917, 1253
RseI	CAYNNNNRTG	3 cut(s)	128, 269, 735
SaqAI	TTAA	4 cut(s)	413, 1002, 1404, 1444
SatI	GCNGC	3 cut(s)	91, 279, 463
Sau3AI	GATC	3 cut(s)	1009, 1177, 1291
Sau96I	GGNCC	2 cut(s)	740, 1344
SchI	GAGTC	3 cut(s)	367, 515, 1117
ScrFI	CCNGG	1 cut(s)	1340
SduI	GDGCHC	1 cut(s)	256
SfaNI	GCATC	3 cut(s)	168, 449, 886
SfcI	CTRYAG	4 cut(s)	88, 586, 753, 939
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	3 cut(s)	128, 269, 735
SmlI	CTYRAG	1 cut(s)	652
SmoI	CTYRAG	1 cut(s)	652
Sse9I	AATT	6 cut(s)	361, 466, 490, 1104, 1141, 1258
SsiI	CCGC	2 cut(s)	463, 606
SspMI	CTAG	7 cut(s)	633, 744, 806, 861, 1080, 1196, 1317
StyD4I	CCNGG	1 cut(s)	1338
TaaI	ACNGT	3 cut(s)	85, 602, 1417
TaqI	TCGA	4 cut(s)	177, 250, 349, 376
TasI	AATT	6 cut(s)	361, 466, 490, 1104, 1141, 1258
TatI	WGTACW	3 cut(s)	597, 916, 1252
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	2 cut(s)	179, 592
Tru1I	TTAA	4 cut(s)	413, 1002, 1404, 1444
Tru9I	TTAA	4 cut(s)	413, 1002, 1404, 1444
TscAI	CASTG	3 cut(s)	436, 607, 1422
TseFI	GTSAC	4 cut(s)	370, 728, 1191, 1207
TseI	GCWGC	2 cut(s)	90, 278
Tsp45I	GTSAC	4 cut(s)	370, 728, 1191, 1207
TspDTI	ATGAA	7 cut(s)	106, 118, 305, 689, 1045, 1131, 1151
TspRI	CASTG	3 cut(s)	436, 607, 1422
Tth111I	GACNNNGTC	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	740
XapI	RAATTY	2 cut(s)	490, 1258
XbaI	TCTAGA	1 cut(s)	860
XceI	RCATGY	1 cut(s)	150
XmiI	GTMKAC	2 cut(s)	509, 1412
XspI	CTAG	7 cut(s)	633, 744, 806, 861, 1080, 1196, 1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.