Rh3DG044800

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009694
Physical Location & Seq
Reverse (-)
2949592 .. 2950369
778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG044800.1

Sequence Viewer

Length: 690 bp
ATGAAGGATGCCGCAATTGCTTCCCTGTACTGGGATGTGTCACTACAAGAAGGGATACGGAGTTGGAAGGAAAACCTCGGGGGGTGGGTTTCAACTGACACCTTCACCTTCCCAAGCACTGACAATGCCTCTATGAACTTCAGGGTAGCATTTGGTTGTGGCATTGATAACCAGAAGATCAGTTTTGGTAAAAATGATGGACCTAAGAATCCGATAGCTGGCGTATTTGGGTTAGGTCTGGGGCAGCGGTCAATCCGAATACAACTAGCTAAGGAGACCAACCGGCGCTTCATTTACCGCTTACCATCATCGACAACACCTAGGTTAAGTCGTACAACATTAAGCTTCGGTAAGGATGCAAAAATAAGTGGATCGAAGTGTACAGAAAACAGAGATTTTCCCAGCAAGAAATATGCAGGCATACTTGTCCATCTTTCAGGTATCACCATTGGCCCATTGCTCAGAAGCGCCTCAATTAATATAGATCCAGCACTGTTCAGGAAATATGAATTAGGTGGCGGATTTATGATAGACACAGGTAGTCCTTACTCTTTGCTTGTTCCAGGAGCATATAATACATTGGGAGCAGCGATGGTGCAGTATATGTTGGAGAATTTTGGAAAGCGTCCAACACGGCTAGGTAGTTTGACCTTTCCTATGGATCATGAAACAAGAGTTTGCCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

229

Amino Acids

25.19

Weight (kDa)

9.68

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 27 - 117 1.2e-09 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 12, 247, 298, 519
AclWI GGATC 3 cut(s) 379, 479, 669
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 124
AfaI GTAC 3 cut(s) 29, 334, 382
AfiI CCNNNNNNNGG 3 cut(s) 30, 31, 218
AgsI TTSAA 1 cut(s) 93
AjnI CCWGG 1 cut(s) 562
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 3 cut(s) 218, 269, 345
AluI AGCT 3 cut(s) 218, 269, 345
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 3 cut(s) 379, 479, 669
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 451
ApeKI GCWGC 2 cut(s) 244, 587
ApoI RAATTY 1 cut(s) 613
AseI ATTAAT 1 cut(s) 477
AspA2I CCTAGG 1 cut(s) 320
AspLEI GCGC 2 cut(s) 288, 470
AspS9I GGNCC 2 cut(s) 200, 452
AsuHPI GGTGA 2 cut(s) 97, 436
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 200
AvrII CCTAGG 1 cut(s) 320
BbvI GCAGC 2 cut(s) 256, 599
BccI CCATC 4 cut(s) 191, 313, 438, 586
BceAI ACGGC 1 cut(s) 650
BciT130I CCWGG 1 cut(s) 564
BciVI GTATCC 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 3 cut(s) 266, 321, 638
BfoI RGCGCY 2 cut(s) 289, 471
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 3 cut(s) 12, 245, 588
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 3 cut(s) 13, 246, 589
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 200, 452
BmrFI CCNGG 1 cut(s) 564
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 76, 320
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 31, 218
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 2 cut(s) 76, 320
BseGI GGATG 3 cut(s) 13, 40, 361
BseLI CCNNNNNNNGG 3 cut(s) 30, 31, 218
BseMI GCAATG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 475
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 256, 599
BseYI CCCAGC 1 cut(s) 401
BsgI GTGCAG 1 cut(s) 617
BshFI GGCC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 283
BslI CCNNNNNNNGG 3 cut(s) 30, 31, 218
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 1 cut(s) 453
Bso31I GGTCTC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 77
Bsp1407I TGTACA 1 cut(s) 380
Bsp143I GATC 4 cut(s) 177, 371, 484, 661
BspACI CCGC 4 cut(s) 12, 247, 298, 519
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 1 cut(s) 474
BspHI TCATGA 1 cut(s) 664
BspPI GGATC 3 cut(s) 379, 479, 669
BspTNI GGTCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 455
BsrFI RCCGGY 1 cut(s) 282
BsrGI TGTACA 1 cut(s) 380
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 76, 320
BssMI GATC 4 cut(s) 177, 371, 484, 661
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 1 cut(s) 495
BstAUI TGTACA 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 220, 418
BstDEI CTNAG 3 cut(s) 204, 270, 461
BstF5I GGATG 3 cut(s) 13, 40, 361
BstH2I RGCGCY 2 cut(s) 289, 471
BstHHI GCGC 2 cut(s) 288, 470
BstKTI GATC 4 cut(s) 180, 374, 487, 664
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 4 cut(s) 177, 371, 484, 661
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 562
BstV1I GCAGC 2 cut(s) 256, 599
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 453
BtgZI GCGATG 1 cut(s) 605
BtsCI GGATG 3 cut(s) 13, 40, 361
BtsIMutI CAGTG 2 cut(s) 117, 491
Cac8I GCNNGC 2 cut(s) 220, 418
CciI TCATGA 1 cut(s) 664
CfoI GCGC 2 cut(s) 288, 470
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 2 cut(s) 200, 452
CseI GACGC 1 cut(s) 614
Csp6I GTAC 3 cut(s) 28, 333, 381
CviAII CATG 1 cut(s) 665
CviJI RGCY 5 cut(s) 218, 269, 345, 453, 637
CviKI_1 RGCY 5 cut(s) 218, 269, 345, 453, 637
CviQI GTAC 3 cut(s) 28, 333, 381
DdeI CTNAG 3 cut(s) 204, 270, 461
DpnI GATC 4 cut(s) 179, 373, 486, 663
DpnII GATC 4 cut(s) 177, 371, 484, 661
EciI GGCGGA 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 1 cut(s) 668
FatI CATG 1 cut(s) 664
Fnu4HI GCNGC 3 cut(s) 12, 245, 588
FokI GGATG 3 cut(s) 20, 47, 368
Fsp4HI GCNGC 3 cut(s) 12, 245, 588
FspBI CTAG 3 cut(s) 266, 321, 638
GlaI GCGC 2 cut(s) 287, 469
GluI GCNGC 3 cut(s) 12, 245, 588
GsaI CCCAGC 1 cut(s) 405
HaeII RGCGCY 2 cut(s) 289, 471
HaeIII GGCC 1 cut(s) 453
HapII CCGG 1 cut(s) 283
HgaI GACGC 1 cut(s) 614
HhaI GCGC 2 cut(s) 288, 470
Hin1II CATG 1 cut(s) 668
Hin6I GCGC 2 cut(s) 286, 468
HinP1I GCGC 2 cut(s) 286, 468
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 283
HphI GGTGA 2 cut(s) 97, 436
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 3 cut(s) 213, 257, 464
Hpy188III TCNNGA 2 cut(s) 499, 665
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 4 cut(s) 44, 61, 112, 118
HpyCH4III ACNGT 1 cut(s) 495
HpyCH4V TGCA 3 cut(s) 359, 416, 598
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 3 cut(s) 204, 270, 461
Hsp92II CATG 1 cut(s) 668
HspAI GCGC 2 cut(s) 286, 468
Kzo9I GATC 4 cut(s) 177, 371, 484, 661
LmnI GCTCC 2 cut(s) 566, 584
Lsp1109I GCAGC 2 cut(s) 256, 599
LweI GCATC 1 cut(s) 346
MaeI CTAG 3 cut(s) 266, 321, 638
MaeIII GTNAC 1 cut(s) 39
MalI GATC 4 cut(s) 179, 373, 486, 663
MboI GATC 4 cut(s) 177, 371, 484, 661
MboII GAAGA 1 cut(s) 187
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 484
MluCI AATT 4 cut(s) 15, 474, 509, 613
MmeI TCCRAC 3 cut(s) 44, 588, 653
MnlI CCTC 3 cut(s) 86, 139, 481
MseI TTAA 3 cut(s) 326, 341, 477
MspA1I CMGCKG 1 cut(s) 247
MspI CCGG 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 564
MunI CAATTG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 4 cut(s) 177, 371, 484, 661
NlaIII CATG 1 cut(s) 668
NmuCI GTSAC 1 cut(s) 39
PagI TCATGA 1 cut(s) 664
PfeI GAWTC 1 cut(s) 208
PfoI TCCNGGA 1 cut(s) 562
PkrI GCNGC 3 cut(s) 13, 246, 589
PshBI ATTAAT 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 562
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 1 cut(s) 562
PspPI GGNCC 2 cut(s) 200, 452
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 3 cut(s) 29, 334, 382
RsaNI GTAC 3 cut(s) 28, 333, 381
SaqAI TTAA 3 cut(s) 326, 341, 477
SatI GCNGC 3 cut(s) 12, 245, 588
Sau3AI GATC 4 cut(s) 177, 371, 484, 661
Sau96I GGNCC 2 cut(s) 200, 452
ScrFI CCNGG 1 cut(s) 564
SfaNI GCATC 1 cut(s) 346
SinI GGWCC 1 cut(s) 200
Sse9I AATT 4 cut(s) 15, 474, 509, 613
SsiI CCGC 4 cut(s) 12, 247, 298, 519
SspMI CTAG 3 cut(s) 266, 321, 638
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 311, 374
TasI AATT 4 cut(s) 15, 474, 509, 613
TatI WGTACW 2 cut(s) 27, 380
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 3 cut(s) 326, 341, 477
Tru9I TTAA 3 cut(s) 326, 341, 477
TscAI CASTG 2 cut(s) 124, 498
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 2 cut(s) 244, 587
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 5 cut(s) 17, 149, 280, 522, 681
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 2 cut(s) 124, 498
VpaK11BI GGWCC 1 cut(s) 200
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 1 cut(s) 613
XmaJI CCTAGG 1 cut(s) 320
XspI CTAG 3 cut(s) 266, 321, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.