Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009694

Physical Location & Seq

Genomic Coordinates Forward (+)

2998474 .. 2999214

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG045100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAACCCTTTGGAATCAGTGTCTAATGGCTTTTTTGCTAGTAGTGTGAGGGTTGGATTTCAAGTGATATCTTTACTTTCCCAGGCACTAGCTAACAAAACCTCTATGAACTTCAGGGTAGCATTTGGTTGTGCCATTGATAACCAGAATATCAGTTTTGGTCAGGGACCTAGGAATCCAATAGCTGGCATATTTGGGTTAGGTATGGGGCAGCGGTCAATCCTAAAACAACAAGCTAAAGAGACCAATGGACGCTTCTCTTACCGTCTGCTGTCATCAACAACACCAAGGGAAACTCATACAACATTAAGATTCGGCAAGGATGCGAAAATAAGTGGAAGTATACAGAAAACAGAGATTTTGACAGCAGTAAACATGCAGGCATACAGTGTCAATGTTTTAGGTATAAGCATTGCAGAAAAGCGCCTTCACATATATCCGGAACTTTTCAAGCTGAAATTTGGCCCTTTTGGTGGATTTTTCATAGACACAGGTACTCCTTACACTATGCTTGTTAAAGGTGCATATACAATTTTGAGACAAGAGATGGTGAAGTATGTTATGCAGCATTATGGACAGCGTCCAACAAAGCAAGGTACTTTTGACATCTGTTCTGGATCGTTAGGAGGGGGAAATAAGACTTTGCCATCAATGACATTCCCCCTTAAAGGAGCAAACCTTGTGCTGGATTATAAGGCTGTGTCTGAACGTTTCAATCTGCATGGCTATATTCCCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

246

Amino Acids

27.11

Weight (kDa)

9.9

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	29 - 106	2.3e-07	Xylanase inhibitor N-terminal
TAXi_C	PF14541	128 - 226	3.1e-14	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04020 FvH4_6g04030 FvH4_6g04030 FvH4_6g04030 FvH4_6g04040
rosa_chinensis	RchiOBHm_Chr3g0452601
rosa_laevigata	RLG00000025579 RLG00000025580 RLG00000025590 RLG00000025592
rosa_roxburghii	Rroxscaffold_6G00429640
rosa_rugosa	Rorug02G0641600
rosa_samantha	Rh3BG045500 Rh3BG046300 Rh3BG046400 Rh3CG044100 Rh3CG045000 Rh3CG045100 Rh3DG044800 Rh3DG045300 Rh3DG045400
rosa_wichuraiana	Rw3G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	343
AccIII	TCCGGA	1 cut(s)	439
AciI	CCGC	1 cut(s)	214
AclI	AACGTT	1 cut(s)	709
AclWI	GGATC	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	97
AfaI	GTAC	2 cut(s)	496, 598
AfiI	CCNNNNNNNGG	4 cut(s)	185, 473, 668, 685
AgsI	TTSAA	3 cut(s)	62, 451, 715
AjnI	CCWGG	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	4 cut(s)	92, 185, 236, 454
AluI	AGCT	4 cut(s)	92, 185, 236, 454
Alw26I	GTCTC	2 cut(s)	236, 532
AlwI	GGATC	1 cut(s)	625
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	211, 565
ApoI	RAATTY	1 cut(s)	458
AspA2I	CCTAGG	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	2 cut(s)	167, 464
AsuHPI	GGTGA	1 cut(s)	562
AvaII	GGWCC	1 cut(s)	167
AvrII	CCTAGG	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	223, 577
BccI	CCATC	2 cut(s)	541, 655
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	236, 532
BfaI	CTAG	4 cut(s)	39, 89, 171, 739
BfoI	RGCGCY	1 cut(s)	427
BisI	GCNGC	2 cut(s)	212, 566
BlnI	CCTAGG	1 cut(s)	170
BlsI	GCNGC	2 cut(s)	213, 567
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	167, 464
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	313
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	81, 170, 287
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 473, 668, 685
Bse3DI	GCAATG	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	81, 170, 287
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	4 cut(s)	185, 473, 668, 685
BseMI	GCAATG	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	223, 577
BshFI	GGCC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	4 cut(s)	185, 473, 668, 685
BsmAI	GTCTC	2 cut(s)	236, 532
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	465
Bso31I	GGTCTC	1 cut(s)	236
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	617
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	465
BspEI	TCCGGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	625
BspTNI	GGTCTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	411
BssECI	CCNNGG	3 cut(s)	81, 170, 287
BssMI	GATC	1 cut(s)	617
BssNAI	GTATAC	1 cut(s)	344
BssT1I	CCWWGG	2 cut(s)	170, 287
Bst1107I	GTATAC	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	266, 389
BstC8I	GCNNGC	2 cut(s)	187, 381
BstF5I	GGATG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	1 cut(s)	620
BstMAI	GTCTC	2 cut(s)	236, 532
BstMBI	GATC	1 cut(s)	617
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	223, 577
BstZ17I	GTATAC	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	24, 394
Cac8I	GCNNGC	2 cut(s)	187, 381
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	2 cut(s)	167, 464
CseI	GACGC	2 cut(s)	261, 569
Csp6I	GTAC	2 cut(s)	495, 597
CviAII	CATG	2 cut(s)	376, 722
CviJI	RGCY	8 cut(s)	30, 92, 185, 236, 454, 465, 698, 726
CviKI_1	RGCY	8 cut(s)	30, 92, 185, 236, 454, 465, 698, 726
CviQI	GTAC	2 cut(s)	495, 597
DpnI	GATC	1 cut(s)	619
DpnII	GATC	1 cut(s)	617
Eco130I	CCWWGG	2 cut(s)	170, 287
Eco31I	GGTCTC	1 cut(s)	236
Eco32I	GATATC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	69
EcoT14I	CCWWGG	2 cut(s)	170, 287
ErhI	CCWWGG	2 cut(s)	170, 287
FaeI	CATG	2 cut(s)	379, 725
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	2 cut(s)	375, 721
FblI	GTMKAC	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	212, 566
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	2 cut(s)	212, 566
FspBI	CTAG	4 cut(s)	39, 89, 171, 739
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	2 cut(s)	212, 566
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	1 cut(s)	440
HgaI	GACGC	2 cut(s)	261, 569
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	2 cut(s)	379, 725
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	3 cut(s)	14, 175, 312
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	2 cut(s)	344, 373
Hpy188I	TCNGA	1 cut(s)	706
Hpy188III	TCNNGA	2 cut(s)	440, 615
Hpy8I	GTNNAC	2 cut(s)	344, 373
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	2 cut(s)	266, 389
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	5 cut(s)	379, 416, 524, 565, 721
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	2 cut(s)	379, 725
HspAI	GCGC	1 cut(s)	424
Kpn2I	TCCGGA	1 cut(s)	439
Kzo9I	GATC	1 cut(s)	617
LmnI	GCTCC	1 cut(s)	671
Lsp1109I	GCAGC	2 cut(s)	223, 577
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	4 cut(s)	39, 89, 171, 739
MaeII	ACGT	1 cut(s)	709
MalI	GATC	1 cut(s)	619
MboI	GATC	1 cut(s)	617
MluCI	AATT	2 cut(s)	458, 531
MmeI	TCCRAC	2 cut(s)	34, 608
MnlI	CCTC	3 cut(s)	42, 112, 620
MroI	TCCGGA	1 cut(s)	439
MseI	TTAA	3 cut(s)	308, 516, 666
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	617
NlaIII	CATG	2 cut(s)	379, 725
NlaIV	GGNNCC	1 cut(s)	168
NspI	RCATGY	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	14, 175, 312
PflFI	GACNNNGTC	1 cut(s)	579
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	213, 567
PpuMI	RGGWCCY	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	693
Psp1406I	AACGTT	1 cut(s)	709
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	167, 464
PspPPI	RGGWCCY	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	579
RsaI	GTAC	2 cut(s)	496, 598
RsaNI	GTAC	2 cut(s)	495, 597
SaqAI	TTAA	3 cut(s)	308, 516, 666
SatI	GCNGC	2 cut(s)	212, 566
Sau3AI	GATC	1 cut(s)	617
Sau96I	GGNCC	2 cut(s)	167, 464
ScrFI	CCNGG	1 cut(s)	83
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	1 cut(s)	167
Sse9I	AATT	2 cut(s)	458, 531
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	4 cut(s)	39, 89, 171, 739
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	170, 287
TaaI	ACNGT	2 cut(s)	266, 389
TaiI	ACGT	1 cut(s)	712
TasI	AATT	2 cut(s)	458, 531
TfiI	GAWTC	3 cut(s)	14, 175, 312
Tru1I	TTAA	3 cut(s)	308, 516, 666
Tru9I	TTAA	3 cut(s)	308, 516, 666
TscAI	CASTG	2 cut(s)	24, 394
TseI	GCWGC	2 cut(s)	211, 565
TspDTI	ATGAA	3 cut(s)	17, 122, 472
TspRI	CASTG	2 cut(s)	24, 394
Tth111I	GACNNNGTC	1 cut(s)	579
Van91I	CCANNNNNTGG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	1 cut(s)	379
XmaJI	CCTAGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	343
XspI	CTAG	4 cut(s)	39, 89, 171, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.