Rw3G003430

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009694
Physical Location & Seq
Forward (+)
2933536 .. 2935860
2325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003430.1

Sequence Viewer

Length: 1239 bp
ATGGCTTTGATAACCATCTGCAGCAATATATTGGCTGTCCTCCTGTACATGGTCACTGCAATGCTGCCCATTGGAACCTGTGGTTTTAGTCTCCACCTCACCCAAATCAATTCAGTCTTCCCAACAAATTTCACTCTGGAAGAGAGGCATCAAATGGTTGAAATGTCAAGAAATCAAGCAGAGTTAATGATGAAAAATGCAGCCAATGATATAATACAAGCCCCTAGTCTACCTGCTCTAGGCCATTACTACATAATGCGAATGATCATTGGCTCACAACTATATTCACCTCACTTACTGGTGGACACAGGCAGTGATGATACATGGGTTCAGGGTGATGGCTGCAGTAGCTGCTTCCCGGTCAAGATAGGAAATTTCAAATATAAAAATTCCTCATCATTCAGCAAGTTACCATGTACCCACCCACTTTGTGTTCCGAAAGTATGTTCTAGTGATGGGCACTGTCTCTACAAGATCACATACTATGGTGGTGGCAGCAGTGAGGGTTGGGCACTAGCTAACAAAACCTCTATGAACTTCAGGGTAGCATTTGGTTGTGGCATTGATAACCAGAATATCAGTTTTGGTCAGGGACCTAGGAATCCAATAGCTGGCATATTTGGGTTAGGTATGGGGCAGCGGTCAATCCTAAAGCAACTAGCTAAAGAGACCAATGGACGCTTCTCTTACCGTCTGCCATCATCAACAACACCAAGGGAAACTCATACAACATTAAGATTCCGTAAGGATGAGAAAATAATAAACATGCAGGCATATAGTGTCAATGTTTTAGGTATAAGCATTATTGCAGAAAAGCGCCTTCACATATATCCAAAACTTTTCAAGCTGAAATTTGGCCCTTTTGGTGGATTTTTCATAGACACAGGTACTCCTTACACTATGCTTTATGTTATGCAGCATTATGGACAGCGTCCAACAAAGCAAGGTACTTTTGACATCTGTTATGGATCGTTAGGAGGGGGAAATAAGACTTTGCCATCAATGACATTCCCCTTTAAAGGAGCAAACCTTGTGCTGGATTATAAGGCGCGCTGTGGGCATTTCAGCAGATCGACAAATCATCGGTTCTTGTTTCGATCTCTTTTTGGTAGAAAACGTTCAGTGTCATTTGCACCAGAGATATGCCAACAAGTTTCAAAAGCTAATGTAACCATTACTTCTCTTATGGCACATGCACAACTTGCGGGTACATACATTTTCATACAGAAATCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

412

Amino Acids

45.79

Weight (kDa)

9.59

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 84 - 237 2.5e-24 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1044
Acc36I ACCTGC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 611
AccI GTMKAC 1 cut(s) 229
AccII CGCG 1 cut(s) 1051
AciI CCGC 2 cut(s) 640, 1205
AclI AACGTT 1 cut(s) 1117
AclWI GGATC 1 cut(s) 976
AcsI RAATTY 4 cut(s) 127, 373, 388, 851
AcuI CTGAAG 1 cut(s) 523
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 5 cut(s) 47, 418, 889, 949, 1210
AfiI CCNNNNNNNGG 6 cut(s) 49, 239, 611, 866, 1019, 1036
AgsI TTSAA 4 cut(s) 161, 379, 844, 1158
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AluBI AGCT 6 cut(s) 351, 518, 611, 662, 847, 1163
AluI AGCT 6 cut(s) 351, 518, 611, 662, 847, 1163
Alw26I GTCTC 3 cut(s) 95, 470, 662
AlwI GGATC 1 cut(s) 976
AlwNI CAGNNNCTG 1 cut(s) 351
AoxI GGCC 2 cut(s) 241, 856
ApeKI GCWGC 8 cut(s) 21, 64, 200, 342, 351, 495, 637, 916
ApoI RAATTY 4 cut(s) 127, 373, 388, 851
Asp700I GAANNNNTTC 1 cut(s) 1117
AspA2I CCTAGG 1 cut(s) 596
AspLEI GCGC 3 cut(s) 819, 1051, 1053
AspS9I GGNCC 2 cut(s) 593, 857
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 3 cut(s) 91, 279, 347
AvaII GGWCC 1 cut(s) 593
AvrII CCTAGG 1 cut(s) 596
BaeGI GKGCMC 2 cut(s) 462, 514
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BbsI GAAGAC 1 cut(s) 109
BbvI GCAGC 8 cut(s) 33, 51, 212, 329, 338, 507, 649, 928
BccI CCATC 5 cut(s) 23, 332, 449, 706, 1006
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 3 cut(s) 95, 470, 662
BfaI CTAG 6 cut(s) 225, 239, 450, 515, 597, 659
BfmI CTRYAG 2 cut(s) 19, 343
BfoI RGCGCY 1 cut(s) 820
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 8 cut(s) 22, 65, 201, 343, 352, 496, 638, 917
BlnI CCTAGG 1 cut(s) 596
BlsI GCNGC 8 cut(s) 23, 66, 202, 344, 353, 497, 639, 918
Bme1390I CCNGG 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 593
BmgT120I GGNCC 2 cut(s) 593, 857
BmiI GGNNCC 2 cut(s) 76, 594
BmrFI CCNGG 1 cut(s) 359
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 109
BpuMI CCSGG 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 662
BsaJI CCNNGG 2 cut(s) 596, 713
BsaXI ACNNNNNCTCC 2 cut(s) 874, 904
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 239, 611, 866, 1019, 1036
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 596, 713
BseGI GGATG 1 cut(s) 754
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 6 cut(s) 49, 239, 611, 866, 1019, 1036
BseMI GCAATG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 303
BsePI GCGCGC 1 cut(s) 1049
BseSI GKGCMC 2 cut(s) 462, 514
BseXI GCAGC 8 cut(s) 33, 51, 212, 329, 338, 507, 649, 928
Bsh1236I CGCG 1 cut(s) 1051
BshFI GGCC 2 cut(s) 243, 858
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 6 cut(s) 49, 239, 611, 866, 1019, 1036
BsmAI GTCTC 3 cut(s) 95, 470, 662
BsmFI GGGAC 1 cut(s) 606
BsnI GGCC 2 cut(s) 243, 858
Bso31I GGTCTC 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 462, 514
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 5 cut(s) 264, 474, 968, 1070, 1097
BspACI CCGC 2 cut(s) 640, 1205
BspANI GGCC 2 cut(s) 243, 858
BspFNI CGCG 1 cut(s) 1051
BspLI GGNNCC 2 cut(s) 76, 594
BspMAI CTGCAG 2 cut(s) 23, 347
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 1 cut(s) 976
BspTNI GGTCTC 1 cut(s) 662
BsrDI GCAATG 1 cut(s) 66
BsrGI TGTACA 1 cut(s) 45
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 2 cut(s) 596, 713
BssHII GCGCGC 1 cut(s) 1049
BssMI GATC 5 cut(s) 264, 474, 968, 1070, 1097
BssT1I CCWWGG 2 cut(s) 596, 713
Bst4CI ACNGT 2 cut(s) 464, 692
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 2 cut(s) 351, 1202
BstAUI TGTACA 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 613, 771, 1051
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 754
BstFNI CGCG 1 cut(s) 1051
BstH2I RGCGCY 1 cut(s) 820
BstHHI GCGC 3 cut(s) 819, 1051, 1053
BstKTI GATC 5 cut(s) 267, 477, 971, 1073, 1100
BstMAI GTCTC 3 cut(s) 95, 470, 662
BstMBI GATC 5 cut(s) 264, 474, 968, 1070, 1097
BstMWI GCNNNNNNNGC 4 cut(s) 348, 351, 1057, 1202
BstNSI RCATGY 2 cut(s) 769, 1196
BstSCI CCNGG 1 cut(s) 357
BstSFI CTRYAG 2 cut(s) 19, 343
BstSLI GKGCMC 2 cut(s) 462, 514
BstUI CGCG 1 cut(s) 1051
BstV1I GCAGC 8 cut(s) 33, 51, 212, 329, 338, 507, 649, 928
BstV2I GAAGAC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 243, 858
BtsCI GGATG 1 cut(s) 754
BtsI GCAGTG 3 cut(s) 54, 319, 505
BtsIMutI CAGTG 5 cut(s) 54, 319, 460, 505, 1128
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 3 cut(s) 613, 771, 1051
CaiI CAGNNNCTG 1 cut(s) 351
CfoI GCGC 3 cut(s) 819, 1051, 1053
Cfr13I GGNCC 2 cut(s) 593, 857
CseI GACGC 2 cut(s) 687, 920
Csp6I GTAC 5 cut(s) 46, 417, 888, 948, 1209
CspCI CAANNNNNGTGG 2 cut(s) 410, 445
CviAII CATG 5 cut(s) 49, 324, 414, 766, 1193
CviQI GTAC 5 cut(s) 46, 417, 888, 948, 1209
DpnI GATC 5 cut(s) 266, 476, 970, 1072, 1099
DpnII GATC 5 cut(s) 264, 474, 968, 1070, 1097
DraI TTTAAA 1 cut(s) 1018
DraIII CACNNNGTG 1 cut(s) 431
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 2 cut(s) 596, 713
Eco31I GGTCTC 1 cut(s) 662
Eco47I GGWCC 1 cut(s) 593
Eco57I CTGAAG 1 cut(s) 523
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 593
EcoT14I CCWWGG 2 cut(s) 596, 713
ErhI CCWWGG 2 cut(s) 596, 713
FaeI CATG 5 cut(s) 52, 327, 417, 769, 1196
FaqI GGGAC 1 cut(s) 606
FatI CATG 5 cut(s) 48, 323, 413, 765, 1192
FauI CCCGC 1 cut(s) 1198
FbaI TGATCA 1 cut(s) 264
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 8 cut(s) 22, 65, 201, 343, 352, 496, 638, 917
FokI GGATG 1 cut(s) 761
Fsp4HI GCNGC 8 cut(s) 22, 65, 201, 343, 352, 496, 638, 917
FspBI CTAG 6 cut(s) 225, 239, 450, 515, 597, 659
GlaI GCGC 3 cut(s) 818, 1050, 1052
GluI GCNGC 8 cut(s) 22, 65, 201, 343, 352, 496, 638, 917
HaeII RGCGCY 1 cut(s) 820
HaeIII GGCC 2 cut(s) 243, 858
HapII CCGG 1 cut(s) 359
HgaI GACGC 2 cut(s) 687, 920
HhaI GCGC 3 cut(s) 819, 1051, 1053
Hin1II CATG 5 cut(s) 52, 327, 417, 769, 1196
Hin6I GCGC 3 cut(s) 817, 1049, 1051
HinP1I GCGC 3 cut(s) 817, 1049, 1051
HinfI GANTC 2 cut(s) 601, 738
HpaII CCGG 1 cut(s) 359
HphI GGTGA 3 cut(s) 91, 279, 347
Hpy166II GTNNAC 2 cut(s) 230, 304
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 3 cut(s) 137, 168, 364
Hpy8I GTNNAC 2 cut(s) 230, 304
HpyAV CCTTC 1 cut(s) 830
HpyCH4III ACNGT 2 cut(s) 464, 692
HpyCH4IV ACGT 1 cut(s) 1117
HpyCH4V TGCA 9 cut(s) 21, 59, 200, 345, 769, 809, 916, 1133, 1196
HpyF10VI GCNNNNNNNGC 4 cut(s) 348, 351, 1057, 1202
HpySE526I ACGT 1 cut(s) 1117
Hsp92II CATG 5 cut(s) 52, 327, 417, 769, 1196
HspAI GCGC 3 cut(s) 817, 1049, 1051
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 5 cut(s) 264, 474, 968, 1070, 1097
LmnI GCTCC 1 cut(s) 1022
Lsp1109I GCAGC 8 cut(s) 33, 51, 212, 329, 338, 507, 649, 928
LweI GCATC 1 cut(s) 157
MaeI CTAG 6 cut(s) 225, 239, 450, 515, 597, 659
MaeII ACGT 1 cut(s) 1117
MaeIII GTNAC 3 cut(s) 52, 408, 1168
MalI GATC 5 cut(s) 266, 476, 970, 1072, 1099
MboI GATC 5 cut(s) 264, 474, 968, 1070, 1097
MboII GAAGA 2 cut(s) 109, 152
MhlI GDGCHC 2 cut(s) 462, 514
MluCI AATT 5 cut(s) 109, 127, 373, 388, 851
MmeI TCCRAC 1 cut(s) 959
MnlI CCTC 8 cut(s) 50, 107, 138, 300, 403, 496, 538, 971
MroXI GAANNNNTTC 1 cut(s) 1117
MseI TTAA 3 cut(s) 185, 734, 1017
MslI CAYNNNNRTG 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 640
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 359
MvnI CGCG 1 cut(s) 1051
MwoI GCNNNNNNNGC 4 cut(s) 348, 351, 1057, 1202
NciI CCSGG 1 cut(s) 359
NdeII GATC 5 cut(s) 264, 474, 968, 1070, 1097
NlaIII CATG 5 cut(s) 52, 327, 417, 769, 1196
NlaIV GGNNCC 2 cut(s) 76, 594
NmuCI GTSAC 1 cut(s) 52
NspI RCATGY 2 cut(s) 769, 1196
PauI GCGCGC 1 cut(s) 1049
PdmI GAANNNNTTC 1 cut(s) 1117
PfeI GAWTC 2 cut(s) 601, 738
PflFI GACNNNGTC 1 cut(s) 930
PflMI CCANNNNNTGG 1 cut(s) 611
PkrI GCNGC 8 cut(s) 23, 66, 202, 344, 353, 497, 639, 918
PpuMI RGGWCCY 1 cut(s) 593
PsiI TTATAA 1 cut(s) 1044
Psp1406I AACGTT 1 cut(s) 1117
Psp5II RGGWCCY 1 cut(s) 593
PspN4I GGNNCC 2 cut(s) 76, 594
PspPI GGNCC 2 cut(s) 593, 857
PspPPI RGGWCCY 1 cut(s) 593
PsrI GAACNNNNNNTAC 2 cut(s) 1102, 1134
PstI CTGCAG 2 cut(s) 23, 347
PstNI CAGNNNCTG 1 cut(s) 351
PsyI GACNNNGTC 1 cut(s) 930
PteI GCGCGC 1 cut(s) 1049
RsaI GTAC 5 cut(s) 47, 418, 889, 949, 1210
RsaNI GTAC 5 cut(s) 46, 417, 888, 948, 1209
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 3 cut(s) 185, 734, 1017
SatI GCNGC 8 cut(s) 22, 65, 201, 343, 352, 496, 638, 917
Sau3AI GATC 5 cut(s) 264, 474, 968, 1070, 1097
Sau96I GGNCC 2 cut(s) 593, 857
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 2 cut(s) 462, 514
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 2 cut(s) 19, 343
SinI GGWCC 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 5 cut(s) 109, 127, 373, 388, 851
SsiI CCGC 2 cut(s) 640, 1205
SspMI CTAG 6 cut(s) 225, 239, 450, 515, 597, 659
StyD4I CCNGG 1 cut(s) 357
StyI CCWWGG 2 cut(s) 596, 713
TaaI ACNGT 2 cut(s) 464, 692
TaiI ACGT 1 cut(s) 1120
TaqI TCGA 2 cut(s) 1073, 1096
TasI AATT 5 cut(s) 109, 127, 373, 388, 851
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 2 cut(s) 601, 738
Tru1I TTAA 3 cut(s) 185, 734, 1017
Tru9I TTAA 3 cut(s) 185, 734, 1017
TscAI CASTG 5 cut(s) 61, 319, 467, 505, 1128
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 8 cut(s) 21, 64, 200, 342, 351, 495, 637, 916
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 4 cut(s) 206, 548, 865, 1210
TspGWI ACGGA 1 cut(s) 731
TspRI CASTG 5 cut(s) 61, 319, 467, 505, 1128
Tth111I GACNNNGTC 1 cut(s) 930
Van91I CCANNNNNTGG 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 593
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 4 cut(s) 127, 373, 388, 851
XceI RCATGY 2 cut(s) 769, 1196
XmaJI CCTAGG 1 cut(s) 596
XmiI GTMKAC 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 1117
XspI CTAG 6 cut(s) 225, 239, 450, 515, 597, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.