Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009694

Physical Location & Seq

Genomic Coordinates Reverse (-)

46835181 .. 46836316

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025579

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGTCATTGGCTCACAACTCTATACACCCTACTTAATGGTAGACACAGGCGGTGCTGATACATGGGTTCAGTGTCAAGGATGCAGCAATTACTTCCCTGTCCTGGGAGGAAATTTCAAATTTAATGAGTCTACATCACATCGTTTCTTACCTTGTAGGGACCCCCTTTGTGTTCCCAAATTATGTGATAGTGGAGGGATATGTGTCTACAAGGTAGCATTTGGTTGTGGCATTGATAACCAGAATATCAGTTGTGGTCATGGACCTAGGAATCCAATAGCTGGCATATTTGGGTTAGGTATGGGGCAGCGGTCAATCCTAAAACAACTAGCTAAAGAGACCAATAGGCGCTTCTCTTACTGTCTGCCGTCATCAACAACACCAAGGGAAACTCATACAACATTAAGCTTCGGTAAGGATGCGAAAACAAGTGGAAGTATACAGAAAACAGAGATTTTGACAGCAGTAAACATGCAGGCATACAGTGTCAATCTTTTAGGTATAAGCATTGCAGAAAAGCGCCTTCACATAGATCCAGAACATTTCAAGCTAAAATTTGGCCGTTTTGGTGGATTTTTCATAGACACAGGTACTCCTTACACTATGCTTGTTAAAGGTGCATATACAATTTTGAGAGAAGAGATGGTGAAGTATGTTATGCAGCATTATGGACAGCGTCCAACAAAGCAAGGTACTTTTGACATCTGTTATGGATCGTTTGGAGGAGGAAATAAGACCTTGCCATCAATGACATTCCACTTTAAAGGAGCAAACCTTGTTCTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

263

Amino Acids

28.81

Weight (kDa)

9.13

Isoelectric Point (pI)

25.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	3 - 71	2.7e-08	Xylanase inhibitor N-terminal
TAXi_N	PF14543	69 - 138	5.2e-10	Xylanase inhibitor N-terminal
TAXi_C	PF14541	160 - 257	5.5e-17	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04020 FvH4_6g04030 FvH4_6g04030 FvH4_6g04030 FvH4_6g04040
rosa_chinensis	RchiOBHm_Chr3g0452601
rosa_laevigata	RLG00000025579 RLG00000025580 RLG00000025590 RLG00000025592
rosa_roxburghii	Rroxscaffold_6G00429640
rosa_rugosa	Rorug02G0641600
rosa_samantha	Rh3BG045500 Rh3BG046300 Rh3BG046400 Rh3CG044100 Rh3CG045000 Rh3CG045100 Rh3DG044800 Rh3DG045300 Rh3DG045400
rosa_wichuraiana	Rw3G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccI	GTMKAC	4 cut(s)	42, 131, 207, 439
AciI	CCGC	2 cut(s)	51, 310
AclWI	GGATC	2 cut(s)	527, 721
AcoI	YGGCCR	1 cut(s)	559
AcsI	RAATTY	3 cut(s)	112, 119, 554
AfaI	GTAC	2 cut(s)	592, 694
AfiI	CCNNNNNNNGG	4 cut(s)	103, 104, 281, 781
AgsI	TTSAA	2 cut(s)	118, 547
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	4 cut(s)	281, 332, 408, 550
AluI	AGCT	4 cut(s)	281, 332, 408, 550
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	527, 721
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	3 cut(s)	84, 307, 661
ApoI	RAATTY	3 cut(s)	112, 119, 554
AspA2I	CCTAGG	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	351, 522
AspS9I	GGNCC	2 cut(s)	160, 263
AsuHPI	GGTGA	1 cut(s)	658
AvaII	GGWCC	2 cut(s)	160, 263
AvrII	CCTAGG	1 cut(s)	266
BaeI	ACNNNNGTAYC	2 cut(s)	51, 84
BbvI	GCAGC	3 cut(s)	96, 319, 673
BccI	CCATC	2 cut(s)	637, 751
BceAI	ACGGC	2 cut(s)	352, 546
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	2 cut(s)	267, 329
BfoI	RGCGCY	2 cut(s)	352, 523
BisI	GCNGC	3 cut(s)	85, 308, 662
BlnI	CCTAGG	1 cut(s)	266
BlsI	GCNGC	3 cut(s)	86, 309, 663
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	160, 263
BmgT120I	GGNCC	2 cut(s)	160, 263
BmiI	GGNNCC	2 cut(s)	161, 162
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	71, 409
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	103, 266, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 104, 281, 781
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	103, 266, 383
BseGI	GGATG	2 cut(s)	86, 424
BseLI	CCNNNNNNNGG	4 cut(s)	103, 104, 281, 781
BseMI	GCAATG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	738
BseXI	GCAGC	3 cut(s)	96, 319, 673
BshFI	GGCC	1 cut(s)	561
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	4 cut(s)	103, 104, 281, 781
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	561
Bso31I	GGTCTC	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	532, 713
BspACI	CCGC	2 cut(s)	51, 310
BspANI	GGCC	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	161, 162
BspPI	GGATC	2 cut(s)	527, 721
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	507
BssECI	CCNNGG	3 cut(s)	103, 266, 383
BssMI	GATC	2 cut(s)	532, 713
BssNAI	GTATAC	1 cut(s)	440
BssT1I	CCWWGG	2 cut(s)	266, 383
Bst1107I	GTATAC	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	362, 485
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	283, 477
BstF5I	GGATG	2 cut(s)	86, 424
BstH2I	RGCGCY	2 cut(s)	352, 523
BstHHI	GCGC	2 cut(s)	351, 522
BstKTI	GATC	2 cut(s)	535, 716
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	532, 713
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	96, 319, 673
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BstZ17I	GTATAC	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	86, 424
BtsIMutI	CAGTG	2 cut(s)	77, 490
Cac8I	GCNNGC	2 cut(s)	283, 477
CfoI	GCGC	2 cut(s)	351, 522
Cfr13I	GGNCC	2 cut(s)	160, 263
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	2 cut(s)	591, 693
CviAII	CATG	3 cut(s)	63, 260, 472
CviJI	RGCY	6 cut(s)	12, 281, 332, 408, 550, 561
CviKI_1	RGCY	6 cut(s)	12, 281, 332, 408, 550, 561
CviQI	GTAC	2 cut(s)	591, 693
DpnI	GATC	2 cut(s)	534, 715
DpnII	GATC	2 cut(s)	532, 713
DraI	TTTAAA	1 cut(s)	763
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco130I	CCWWGG	2 cut(s)	266, 383
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	2 cut(s)	160, 263
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	266, 383
ErhI	CCWWGG	2 cut(s)	266, 383
FaeI	CATG	3 cut(s)	66, 263, 475
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	3 cut(s)	62, 259, 471
FblI	GTMKAC	4 cut(s)	42, 131, 207, 439
Fnu4HI	GCNGC	3 cut(s)	85, 308, 662
FokI	GGATG	2 cut(s)	93, 431
Fsp4HI	GCNGC	3 cut(s)	85, 308, 662
FspBI	CTAG	2 cut(s)	267, 329
GlaI	GCGC	2 cut(s)	350, 521
GluI	GCNGC	3 cut(s)	85, 308, 662
HaeII	RGCGCY	2 cut(s)	352, 523
HaeIII	GGCC	1 cut(s)	561
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	2 cut(s)	351, 522
Hin1II	CATG	3 cut(s)	66, 263, 475
Hin6I	GCGC	2 cut(s)	349, 520
HinP1I	GCGC	2 cut(s)	349, 520
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	2 cut(s)	128, 271
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	5 cut(s)	43, 132, 208, 440, 469
Hpy188III	TCNNGA	1 cut(s)	536
Hpy8I	GTNNAC	5 cut(s)	43, 132, 208, 440, 469
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	2 cut(s)	362, 485
HpyCH4V	TGCA	5 cut(s)	84, 475, 512, 620, 661
Hsp92II	CATG	3 cut(s)	66, 263, 475
HspAI	GCGC	2 cut(s)	349, 520
KflI	GGGWCCC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	532, 713
LmnI	GCTCC	1 cut(s)	767
Lsp1109I	GCAGC	3 cut(s)	96, 319, 673
LweI	GCATC	2 cut(s)	71, 409
MaeI	CTAG	2 cut(s)	267, 329
MalI	GATC	2 cut(s)	534, 715
MboI	GATC	2 cut(s)	532, 713
MboII	GAAGA	1 cut(s)	650
MflI	RGATCY	1 cut(s)	532
MluCI	AATT	6 cut(s)	88, 112, 119, 179, 554, 627
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	4 cut(s)	101, 188, 716, 719
MseI	TTAA	5 cut(s)	35, 123, 404, 612, 762
MspA1I	CMGCKG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	532, 713
NlaIII	CATG	3 cut(s)	66, 263, 475
NlaIV	GGNNCC	2 cut(s)	161, 162
NspI	RCATGY	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	271
PflFI	GACNNNGTC	1 cut(s)	675
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	86, 309, 663
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	161, 162
PspPI	GGNCC	2 cut(s)	160, 263
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	532
PsyI	GACNNNGTC	1 cut(s)	675
RsaI	GTAC	2 cut(s)	592, 694
RsaNI	GTAC	2 cut(s)	591, 693
SaqAI	TTAA	5 cut(s)	35, 123, 404, 612, 762
SatI	GCNGC	3 cut(s)	85, 308, 662
Sau3AI	GATC	2 cut(s)	532, 713
Sau96I	GGNCC	2 cut(s)	160, 263
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	71, 409
SinI	GGWCC	2 cut(s)	160, 263
Sse9I	AATT	6 cut(s)	88, 112, 119, 179, 554, 627
SsiI	CCGC	2 cut(s)	51, 310
SspMI	CTAG	2 cut(s)	267, 329
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	266, 383
TaaI	ACNGT	2 cut(s)	362, 485
TasI	AATT	6 cut(s)	88, 112, 119, 179, 554, 627
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	5 cut(s)	35, 123, 404, 612, 762
Tru9I	TTAA	5 cut(s)	35, 123, 404, 612, 762
TscAI	CASTG	2 cut(s)	77, 490
TseI	GCWGC	3 cut(s)	84, 307, 661
TspDTI	ATGAA	1 cut(s)	568
TspRI	CASTG	2 cut(s)	77, 490
Tth111I	GACNNNGTC	1 cut(s)	675
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	160, 263
XapI	RAATTY	3 cut(s)	112, 119, 554
XceI	RCATGY	1 cut(s)	475
XmaJI	CCTAGG	1 cut(s)	266
XmiI	GTMKAC	4 cut(s)	42, 131, 207, 439
XspI	CTAG	2 cut(s)	267, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.