RLG00000025590

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009694
Physical Location & Seq
Forward (+)
46950837 .. 46951480
644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025590

Sequence Viewer

Length: 396 bp
ATGGCCTTGAGTTCAGCCAGAGCAATGAACCCATCAGATGAGTACATGAATGATATGCCTACTACTATACAACCCCCTATATCTCTAGCTCTAACTCCTCTAAGTAATTACTACGTAACTCGAATTGGCATTGGCTCACAACTCTATACACCCTACTTAATGGTGGATACGACTGCTGCTGATACATATATGGGTTCAGCGCCCCTTTGTGGTCCCAAATTATGTGATAGTGGAGGGATGTGTCACTACAAGATGGGATACGGAGGTGGAAGCAAAACCTCGGGGCGGTCAATCCTAATACAACTAGCTAAGGAGACCAACCGGCGCTTCATTTACCGCTTAATTACCATCATCGACAACACCAAGGTTAAGTCGTACAACATTAAGCTTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

132

Amino Acids

14.43

Weight (kDa)

9.32

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 286, 337
AfaI GTAC 2 cut(s) 44, 377
AfiI CCNNNNNNNGG 2 cut(s) 209, 285
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 3 cut(s) 89, 308, 388
AluI AGCT 3 cut(s) 89, 308, 388
Alw26I GTCTC 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 176
AspLEI GCGC 2 cut(s) 202, 327
AspS9I GGNCC 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 1 cut(s) 212
BaeI ACNNNNGTAYC 2 cut(s) 250, 283
BbvI GCAGC 1 cut(s) 163
BccI CCATC 3 cut(s) 40, 247, 356
BciVI GTATCC 2 cut(s) 160, 251
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 2 cut(s) 86, 305
BfoI RGCGCY 2 cut(s) 203, 328
BfuI GTATCC 2 cut(s) 160, 251
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 2 cut(s) 279, 363
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 285
Bse118I RCCGGY 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 279, 363
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 209, 285
BseMI GCAATG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 163
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 209, 285
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 280
BspACI CCGC 2 cut(s) 286, 337
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 214
BspTNI GGTCTC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 279, 363
BssT1I CCWWGG 1 cut(s) 363
BstBAI YACGTR 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 101, 309
BstF5I GGATG 1 cut(s) 243
BstH2I RGCGCY 2 cut(s) 203, 328
BstHHI GCGC 2 cut(s) 202, 327
BstMAI GTCTC 1 cut(s) 308
BstSNI TACGTA 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 163
BsuI GTATCC 2 cut(s) 160, 251
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 243
CfoI GCGC 2 cut(s) 202, 327
Cfr10I RCCGGY 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 43, 376
CviAII CATG 1 cut(s) 46
CviJI RGCY 6 cut(s) 5, 17, 89, 135, 308, 388
CviKI_1 RGCY 6 cut(s) 5, 17, 89, 135, 308, 388
CviQI GTAC 2 cut(s) 43, 376
DdeI CTNAG 2 cut(s) 101, 309
Eco105I TACGTA 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 1 cut(s) 49
FaiI YATR 9 cut(s) 47, 56, 68, 80, 147, 187, 189, 191, 223
FaqI GGGAC 1 cut(s) 198
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 86, 305
GlaI GCGC 2 cut(s) 201, 326
GluI GCNGC 1 cut(s) 177
HaeII RGCGCY 2 cut(s) 203, 328
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 322
HhaI GCGC 2 cut(s) 202, 327
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 2 cut(s) 200, 325
HinP1I GCGC 2 cut(s) 200, 325
HindIII AAGCTT 1 cut(s) 386
HpaII CCGG 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 114
HpyF3I CTNAG 2 cut(s) 101, 309
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 2 cut(s) 200, 325
LpnPI CCDG 2 cut(s) 31, 335
Lsp1109I GCAGC 1 cut(s) 163
MaeI CTAG 2 cut(s) 86, 305
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 115, 242
MluCI AATT 4 cut(s) 106, 123, 218, 342
MnlI CCTC 4 cut(s) 108, 227, 257, 289
MseI TTAA 4 cut(s) 158, 341, 369, 384
MspI CCGG 1 cut(s) 322
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 212
RsaI GTAC 2 cut(s) 44, 377
RsaNI GTAC 2 cut(s) 43, 376
SaqAI TTAA 4 cut(s) 158, 341, 369, 384
SatI GCNGC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 212
SetI ASST 7 cut(s) 91, 117, 268, 281, 310, 369, 390
SinI GGWCC 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
SnaBI TACGTA 1 cut(s) 115
Sse9I AATT 4 cut(s) 106, 123, 218, 342
SsiI CCGC 2 cut(s) 286, 337
SspMI CTAG 2 cut(s) 86, 305
StyI CCWWGG 1 cut(s) 363
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 121, 354
TasI AATT 4 cut(s) 106, 123, 218, 342
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 4 cut(s) 158, 341, 369, 384
Tru9I TTAA 4 cut(s) 158, 341, 369, 384
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 41, 62, 319
TspGWI ACGGA 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 212
XspI CTAG 2 cut(s) 86, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.