Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009694

Physical Location & Seq

Genomic Coordinates Reverse (-)

46842091 .. 46843449

Gene Structure 1359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCCTGCTTACAATGTAAGCCTTTTAGGTATTGGCATTGCAGGAAAGCGCCTTAATATAGATCAAGCATTGTTCAAGCTGAAGCATGGCACTATTAATATTGGTGGATTTTTCATAGACACAGGTTGTCCTTACACTATGCTTGTTCGAGGTGCATACACAATTTTAAGAGATGAAATGACTCGATATATTATGAAGAATTATGGAAAGCGTCCGACAAGGAAAGGTTCTTTTGATCTTTGTTATGAATCATTAGGAGGAAATGTGAGTTTGCCATCAATGACATACCACTTCAAAGGGGCAAATCTTGGATTGGATCCAGAAGCTGTGTTTGAGCGAATTGGATTTGATCTCTGCAATCTGCATGGCTATATTGCCTGCTATCAATGCAGAACAAAACATCTTGGGGGCTTTTCAACAGGCAAATCATCGGACCCCCTTTGTGTTCCCAAATTATGTGATAGTGGAAAGATGTGTCACTACAAGATCGGATACGGAGGTGGAAGCAAAACTGAGGGGTGGGATTCAACTGACACCTTCACCTTCCCAAGCAGTGACAATACCTCTATGAACTACCGGGTAGCATTTGGTTGTGGCATTGATAAGCAGAATATCAGTTTTGGTAAAAATGATGGACCTAAGAATCCGATAGCTGGCGTATTTGAGTTAGGTCTGGGGCAGCGGTCAATCCTAATACAACTAGCTAAGGAGATCAACCGGCGCTTCTCTTACTGCTTACCATCATCGACAACACCAAGGTTAAGTCGTACAACATTAAGCTTCGGTAAGGATGCAAAAATAAGTGGAAGTGTACGGAAAGCAGAGATTTTTCCAGGAAGAAATATGCAGGCATACTCTGTCTTTCTTTCAGTTTCAGGCATCACCATTTCTCAAAAGCGCCTCAATATAGACCCAGCACCTGTTCAGGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

312

Amino Acids

34.14

Weight (kDa)

9.33

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	3 - 113	6e-16	Xylanase inhibitor C-terminal
TAXi_N	PF14543	142 - 262	1.2e-16	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04020 FvH4_6g04030 FvH4_6g04030 FvH4_6g04030 FvH4_6g04040
rosa_chinensis	RchiOBHm_Chr3g0452601
rosa_laevigata	RLG00000025579 RLG00000025580 RLG00000025590 RLG00000025592
rosa_roxburghii	Rroxscaffold_6G00429640
rosa_rugosa	Rorug02G0641600
rosa_samantha	Rh3BG045500 Rh3BG046300 Rh3BG046400 Rh3CG044100 Rh3CG045000 Rh3CG045100 Rh3DG044800 Rh3DG045300 Rh3DG045400
rosa_wichuraiana	Rw3G003430

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	682
AclWI	GGATC	2 cut(s)	311, 324
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	769, 813
AfiI	CCNNNNNNNGG	1 cut(s)	653
AgsI	TTSAA	4 cut(s)	76, 295, 417, 528
AjnI	CCWGG	1 cut(s)	832
AluBI	AGCT	5 cut(s)	79, 326, 653, 704, 780
AluI	AGCT	5 cut(s)	79, 326, 653, 704, 780
AlwI	GGATC	2 cut(s)	311, 324
AlwNI	CAGNNNCTG	2 cut(s)	326, 920
ApeKI	GCWGC	1 cut(s)	679
AseI	ATTAAT	1 cut(s)	96
AspLEI	GCGC	3 cut(s)	51, 723, 900
AspS9I	GGNCC	2 cut(s)	433, 635
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	2 cut(s)	532, 874
AvaII	GGWCC	2 cut(s)	433, 635
BaeI	ACNNNNGTAYC	2 cut(s)	484, 517
BamHI	GGATCC	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	3 cut(s)	283, 626, 748
BciT130I	CCWGG	1 cut(s)	834
BciVI	GTATCC	1 cut(s)	485
BcnI	CCSGG	1 cut(s)	578
BfaI	CTAG	1 cut(s)	701
BfoI	RGCGCY	3 cut(s)	52, 724, 901
BfuI	GTATCC	1 cut(s)	485
BisI	GCNGC	1 cut(s)	680
BlsI	GCNGC	1 cut(s)	681
Bme1390I	CCNGG	2 cut(s)	578, 834
Bme18I	GGWCC	2 cut(s)	433, 635
BmgT120I	GGNCC	2 cut(s)	433, 635
BmiI	GGNNCC	2 cut(s)	318, 435
BmrFI	CCNGG	2 cut(s)	578, 834
BmsI	GCATC	2 cut(s)	781, 888
Bpu10I	CCTNAGC	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	755
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	653
Bse118I	RCCGGY	1 cut(s)	717
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	834
BseDI	CCNNGG	1 cut(s)	755
BseGI	GGATG	1 cut(s)	796
BseLI	CCNNNNNNNGG	1 cut(s)	653
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	691
BseYI	CCCAGC	1 cut(s)	913
BsiSI	CCGG	2 cut(s)	577, 718
BslI	CCNNNNNNNGG	1 cut(s)	653
Bsp143I	GATC	6 cut(s)	61, 235, 316, 349, 486, 711
BspACI	CCGC	1 cut(s)	682
BspCNI	CTCAG	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	318, 435
BspPI	GGATC	2 cut(s)	311, 324
BsrDI	GCAATG	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	717
BssAI	RCCGGY	1 cut(s)	717
BssECI	CCNNGG	1 cut(s)	755
BssMI	GATC	6 cut(s)	61, 235, 316, 349, 486, 711
BssT1I	CCWWGG	1 cut(s)	755
Bst2UI	CCWGG	1 cut(s)	834
BstC8I	GCNNGC	4 cut(s)	6, 379, 655, 849
BstDEI	CTNAG	3 cut(s)	513, 639, 705
BstF5I	GGATG	1 cut(s)	796
BstH2I	RGCGCY	3 cut(s)	52, 724, 901
BstHHI	GCGC	3 cut(s)	51, 723, 900
BstKTI	GATC	6 cut(s)	64, 238, 319, 352, 489, 714
BstMBI	GATC	6 cut(s)	61, 235, 316, 349, 486, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	1 cut(s)	834
BstSCI	CCNGG	2 cut(s)	576, 832
BstV1I	GCAGC	1 cut(s)	691
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuI	GTATCC	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	796
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	4 cut(s)	6, 379, 655, 849
CaiI	CAGNNNCTG	2 cut(s)	326, 920
CfoI	GCGC	3 cut(s)	51, 723, 900
Cfr10I	RCCGGY	1 cut(s)	717
Cfr13I	GGNCC	2 cut(s)	433, 635
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	768, 812
CviAII	CATG	2 cut(s)	86, 365
CviJI	RGCY	8 cut(s)	21, 79, 326, 369, 411, 653, 704, 780
CviKI_1	RGCY	8 cut(s)	21, 79, 326, 369, 411, 653, 704, 780
CviQI	GTAC	2 cut(s)	768, 812
DdeI	CTNAG	3 cut(s)	513, 639, 705
DpnI	GATC	6 cut(s)	63, 237, 318, 351, 488, 713
DpnII	GATC	6 cut(s)	61, 235, 316, 349, 486, 711
Eco130I	CCWWGG	1 cut(s)	755
Eco47I	GGWCC	2 cut(s)	433, 635
Eco57I	CTGAAG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	755
ErhI	CCWWGG	1 cut(s)	755
FaeI	CATG	2 cut(s)	89, 368
FatI	CATG	2 cut(s)	85, 364
Fnu4HI	GCNGC	1 cut(s)	680
FokI	GGATG	1 cut(s)	803
Fsp4HI	GCNGC	1 cut(s)	680
FspBI	CTAG	1 cut(s)	701
GlaI	GCGC	3 cut(s)	50, 722, 899
GluI	GCNGC	1 cut(s)	680
GsaI	CCCAGC	1 cut(s)	917
HaeII	RGCGCY	3 cut(s)	52, 724, 901
HapII	CCGG	2 cut(s)	577, 718
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	3 cut(s)	51, 723, 900
Hin1II	CATG	2 cut(s)	89, 368
Hin6I	GCGC	3 cut(s)	49, 721, 898
HinP1I	GCGC	3 cut(s)	49, 721, 898
HindIII	AAGCTT	1 cut(s)	778
HinfI	GANTC	4 cut(s)	181, 248, 524, 643
HpaII	CCGG	2 cut(s)	577, 718
HphI	GGTGA	2 cut(s)	532, 874
Hpy166II	GTNNAC	1 cut(s)	812
Hpy188I	TCNGA	4 cut(s)	216, 433, 491, 648
Hpy188III	TCNNGA	2 cut(s)	320, 926
Hpy8I	GTNNAC	1 cut(s)	812
HpyAV	CCTTC	2 cut(s)	547, 553
HpyCH4V	TGCA	7 cut(s)	41, 155, 357, 364, 390, 794, 847
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	3 cut(s)	513, 639, 705
Hsp92II	CATG	2 cut(s)	89, 368
HspAI	GCGC	3 cut(s)	49, 721, 898
Kzo9I	GATC	6 cut(s)	61, 235, 316, 349, 486, 711
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	2 cut(s)	781, 888
MaeI	CTAG	1 cut(s)	701
MaeIII	GTNAC	2 cut(s)	476, 554
MalI	GATC	6 cut(s)	63, 237, 318, 351, 488, 713
MboI	GATC	6 cut(s)	61, 235, 316, 349, 486, 711
MboII	GAAGA	2 cut(s)	208, 849
MflI	RGATCY	1 cut(s)	316
MluCI	AATT	4 cut(s)	162, 199, 339, 452
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	6 cut(s)	143, 251, 491, 508, 574, 911
MseI	TTAA	5 cut(s)	54, 96, 167, 761, 776
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	2 cut(s)	577, 718
MspR9I	CCNGG	2 cut(s)	578, 834
MvaI	CCWGG	1 cut(s)	834
MwoI	GCNNNNNNNGC	1 cut(s)	387
NciI	CCSGG	1 cut(s)	578
NdeII	GATC	6 cut(s)	61, 235, 316, 349, 486, 711
NlaIII	CATG	2 cut(s)	89, 368
NlaIV	GGNNCC	2 cut(s)	318, 435
NmuCI	GTSAC	2 cut(s)	476, 554
PfeI	GAWTC	3 cut(s)	248, 524, 643
PfoI	TCCNGGA	1 cut(s)	832
PkrI	GCNGC	1 cut(s)	681
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PshBI	ATTAAT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	913
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	2 cut(s)	318, 435
PspPI	GGNCC	2 cut(s)	433, 635
PstNI	CAGNNNCTG	2 cut(s)	326, 920
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	2 cut(s)	769, 813
RsaNI	GTAC	2 cut(s)	768, 812
SaqAI	TTAA	5 cut(s)	54, 96, 167, 761, 776
SatI	GCNGC	1 cut(s)	680
Sau3AI	GATC	6 cut(s)	61, 235, 316, 349, 486, 711
Sau96I	GGNCC	2 cut(s)	433, 635
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	2 cut(s)	578, 834
SfaNI	GCATC	2 cut(s)	781, 888
SinI	GGWCC	2 cut(s)	433, 635
Sse9I	AATT	4 cut(s)	162, 199, 339, 452
SsiI	CCGC	1 cut(s)	682
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	2 cut(s)	576, 832
StyI	CCWWGG	1 cut(s)	755
TaqI	TCGA	3 cut(s)	148, 184, 746
TasI	AATT	4 cut(s)	162, 199, 339, 452
TfiI	GAWTC	3 cut(s)	248, 524, 643
Tru1I	TTAA	5 cut(s)	54, 96, 167, 761, 776
Tru9I	TTAA	5 cut(s)	54, 96, 167, 761, 776
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	2 cut(s)	476, 554
TseI	GCWGC	1 cut(s)	679
Tsp45I	GTSAC	2 cut(s)	476, 554
TspDTI	ATGAA	5 cut(s)	103, 189, 209, 261, 584
TspGWI	ACGGA	2 cut(s)	510, 829
TspRI	CASTG	1 cut(s)	559
VpaK11BI	GGWCC	2 cut(s)	433, 635
VspI	ATTAAT	1 cut(s)	96
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.