Rroxscaffold_6G00429640

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009694
Physical Location & Seq
Forward (+)
49890049 .. 49892613
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429640.1

Sequence Viewer

Length: 471 bp
ATGGCCTTGAGTTCAGCCGGAGCAATGAACTCATCAGATGAGTTCATGAAGGATATGCCTACTACTATACAACCCCCTATCCCTCCAGCTCTAAGTAATTACTATGTAAAGCGAATTGTCATTGGCTCACAACTCTGTACACCCTACTTAATGGTGGATATGGCCATTGCTGATACATGGGTTCAGTGTGAAGGATGCCGCAATTGCTTTCCTGATGCGAAAATTAGTGGAAGTATACAGAAAACAGAGATTTTGACAGCTGTAAATATGCAGGCATACAGTGTCAATCTTTTAGGTATGAGCATTGCAGAAAAGCGCCTTCACATAGATCCAGAACTTTTCAAGATGAAATTTGGCCCTTTTGGTGAATTTTTCATAGACACAGGTACTCCTTACACTATGCTTGTTAAAGGTGCATATACAATTCTGGCCATTTGCACCAGAGATATGCCAACAAGTTTCAAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

156

Amino Acids

17.24

Weight (kDa)

5.76

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 92 - 142 7.7e-08 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AciI CCGC 1 cut(s) 199
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 2 cut(s) 162, 429
AcsI RAATTY 2 cut(s) 350, 368
AfaI GTAC 2 cut(s) 139, 388
AgsI TTSAA 2 cut(s) 343, 463
AluBI AGCT 3 cut(s) 89, 260, 468
AluI AGCT 3 cut(s) 89, 260, 468
AlwI GGATC 1 cut(s) 323
AoxI GGCC 4 cut(s) 3, 162, 355, 429
ApoI RAATTY 2 cut(s) 350, 368
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 377
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BalI TGGCCA 2 cut(s) 164, 431
BfoI RGCGCY 1 cut(s) 319
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 356
BmsI GCATC 2 cut(s) 185, 205
BpmI CTGGAG 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bse3DI GCAATG 3 cut(s) 30, 165, 303
BseGI GGATG 1 cut(s) 200
BseMI GCAATG 3 cut(s) 30, 165, 303
BshFI GGCC 4 cut(s) 5, 164, 357, 431
BsiSI CCGG 1 cut(s) 18
BsnI GGCC 4 cut(s) 5, 164, 357, 431
Bsp1407I TGTACA 1 cut(s) 137
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 1 cut(s) 199
BspANI GGCC 4 cut(s) 5, 164, 357, 431
BspHI TCATGA 1 cut(s) 45
BspPI GGATC 1 cut(s) 323
BsrDI GCAATG 3 cut(s) 30, 165, 303
BsrGI TGTACA 1 cut(s) 137
BssMI GATC 1 cut(s) 328
BssNAI GTATAC 1 cut(s) 236
Bst1107I GTATAC 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 200
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 1 cut(s) 331
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BstZ17I GTATAC 1 cut(s) 236
BsuRI GGCC 4 cut(s) 5, 164, 357, 431
BtsCI GGATG 1 cut(s) 200
BtsIMutI CAGTG 2 cut(s) 191, 286
Cac8I GCNNGC 1 cut(s) 273
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 356
Csp6I GTAC 2 cut(s) 138, 387
CviAII CATG 2 cut(s) 46, 177
CviJI RGCY 9 cut(s) 5, 17, 89, 126, 164, 260, 357, 431, 468
CviKI_1 RGCY 9 cut(s) 5, 17, 89, 126, 164, 260, 357, 431, 468
CviQI GTAC 2 cut(s) 138, 387
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
EaeI YGGCCR 2 cut(s) 162, 429
FaeI CATG 2 cut(s) 49, 180
FatI CATG 2 cut(s) 45, 176
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 199
GlaI GCGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 199
GsuI CTGGAG 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 4 cut(s) 5, 164, 357, 431
HapII CCGG 1 cut(s) 18
HhaI GCGC 1 cut(s) 318
Hin1II CATG 2 cut(s) 49, 180
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 2 cut(s) 140, 236
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 4 cut(s) 46, 212, 332, 343
Hpy8I GTNNAC 2 cut(s) 140, 236
HpyAV CCTTC 3 cut(s) 43, 185, 329
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 4 cut(s) 271, 308, 416, 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 2 cut(s) 49, 180
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 8 cut(s) 31, 99, 225, 257, 345, 369, 413, 454
LweI GCATC 2 cut(s) 185, 205
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MfeI CAATTG 1 cut(s) 202
MflI RGATCY 1 cut(s) 328
MlsI TGGCCA 2 cut(s) 164, 431
MluCI AATT 7 cut(s) 97, 114, 202, 222, 350, 368, 423
MluNI TGGCCA 2 cut(s) 164, 431
MnlI CCTC 1 cut(s) 93
Mox20I TGGCCA 2 cut(s) 164, 431
MscI TGGCCA 2 cut(s) 164, 431
MseI TTAA 2 cut(s) 149, 408
Msp20I TGGCCA 2 cut(s) 164, 431
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 1 cut(s) 18
MunI CAATTG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 204
NdeII GATC 1 cut(s) 328
NlaIII CATG 2 cut(s) 49, 180
PagI TCATGA 1 cut(s) 45
PkrI GCNGC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 356
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 2 cut(s) 139, 388
RsaNI GTAC 2 cut(s) 138, 387
SaqAI TTAA 2 cut(s) 149, 408
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 1 cut(s) 356
SetI ASST 6 cut(s) 91, 262, 298, 388, 415, 470
SfaNI GCATC 2 cut(s) 185, 205
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 7 cut(s) 97, 114, 202, 222, 350, 368, 423
SsiI CCGC 1 cut(s) 199
TaaI ACNGT 1 cut(s) 281
TasI AATT 7 cut(s) 97, 114, 202, 222, 350, 368, 423
TatI WGTACW 1 cut(s) 137
TauI GCSGC 1 cut(s) 201
Tru1I TTAA 2 cut(s) 149, 408
Tru9I TTAA 2 cut(s) 149, 408
TscAI CASTG 2 cut(s) 191, 286
TspDTI ATGAA 5 cut(s) 34, 41, 62, 362, 364
TspRI CASTG 2 cut(s) 191, 286
XapI RAATTY 2 cut(s) 350, 368
XmiI GTMKAC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.