Rorug02G0641600

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009694
Physical Location & Seq
Forward (+)
75364531 .. 75366652
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0641600.1

Sequence Viewer

Length: 483 bp
ATGGGATCTAGTGCTGGAAGTTTCCTCAAAGTTCTCCTTAAAAACGTCGATGTTCTTGCTGGGCCTGTGGTTAGTTTGGTTTACCCACTGTATGCCTCAATTCGGGTTATAGAGACCAAATCTCCAACTGATGATCGCCAATGGCTTACGTATTGGATTCTCTACTCTATGATTACACTCTTTGAGCTCACTTTTGCCAAACTTATTGAGTGGATCCCGATCTGGTCATATGCCAAGTTGATCATGACTTGTTGGTTGGTCATCCCGTACTTCAGTGGTGCTATATATGTCTACGAACACTGTCAAGCCATTTTTCCTCAACCCACAGACAATCAACATTTGGTAAATTATATCACTTCATTGACATGCAATGTATCATATGGTCCTGTTTGGCTTCAGTTTTCTTTGAGCTGGTCAACAATCTCTTTTCTTGCACGGGCGTGCCAGCACCGTTCAGGTGCGGTCGTCGGGTGTGTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

160

Amino Acids

18.16

Weight (kDa)

7.62

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 29 - 101 3.1e-25 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AciI CCGC 1 cut(s) 461
AclWI GGATC 3 cut(s) 13, 208, 221
AcuI CTGAAG 2 cut(s) 256, 380
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 102
AleI CACNNNNGTG 1 cut(s) 439
AluBI AGCT 2 cut(s) 187, 411
AluI AGCT 2 cut(s) 187, 411
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 3 cut(s) 13, 208, 221
AoxI GGCC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 62, 383
AvaII GGWCC 1 cut(s) 383
BamHI GGATCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 2 cut(s) 62, 383
BmiI GGNNCC 1 cut(s) 215
BsaAI YACGTR 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 218
BseGI GGATG 1 cut(s) 261
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMI GCAATG 1 cut(s) 376
BseYI CCCAGC 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 465
BshFI GGCC 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 189
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 1 cut(s) 64
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 5 cut(s) 5, 133, 213, 219, 240
BspACI CCGC 1 cut(s) 461
BspANI GGCC 1 cut(s) 64
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 215
BspPI GGATC 3 cut(s) 13, 208, 221
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 376
BssMI GATC 5 cut(s) 5, 133, 213, 219, 240
Bst4CI ACNGT 3 cut(s) 90, 302, 452
BstBAI YACGTR 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 442, 446
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 5 cut(s) 8, 136, 216, 222, 243
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 5 cut(s) 5, 133, 213, 219, 240
BstMCI CGRYCG 1 cut(s) 465
BstNSI RCATGY 1 cut(s) 369
BstSNI TACGTA 1 cut(s) 150
BstX2I RGATCY 2 cut(s) 5, 213
BstYI RGATCY 2 cut(s) 5, 213
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 86, 280, 298
Cac8I GCNNGC 2 cut(s) 442, 446
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 62, 383
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 244, 366
CviJI RGCY 6 cut(s) 64, 145, 187, 308, 394, 411
CviKI_1 RGCY 6 cut(s) 64, 145, 187, 308, 394, 411
CviQI GTAC 1 cut(s) 268
DpnI GATC 5 cut(s) 7, 135, 215, 221, 242
DpnII GATC 5 cut(s) 5, 133, 213, 219, 240
Ecl136II GAGCTC 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 2 cut(s) 256, 380
EcoICRI GAGCTC 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 189
FaeI CATG 2 cut(s) 247, 369
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 1 cut(s) 461
FatI CATG 2 cut(s) 243, 365
FauNDI CATATG 2 cut(s) 229, 379
FbaI TGATCA 1 cut(s) 240
FblI GTMKAC 1 cut(s) 291
FokI GGATG 1 cut(s) 248
FriOI GRGCYC 1 cut(s) 189
FspBI CTAG 1 cut(s) 9
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 2 cut(s) 247, 369
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 1 cut(s) 157
Hpy166II GTNNAC 3 cut(s) 82, 292, 417
Hpy188III TCNNGA 2 cut(s) 217, 244
Hpy8I GTNNAC 3 cut(s) 82, 292, 417
Hpy99I CGWCG 2 cut(s) 50, 470
HpyCH4III ACNGT 3 cut(s) 90, 302, 452
HpyCH4IV ACGT 2 cut(s) 45, 149
HpyCH4V TGCA 2 cut(s) 369, 434
HpySE526I ACGT 2 cut(s) 45, 149
Hsp92II CATG 2 cut(s) 247, 369
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 5 cut(s) 5, 133, 213, 219, 240
LpnPI CCDG 7 cut(s) 45, 78, 208, 397, 399, 441, 458
MaeI CTAG 1 cut(s) 9
MaeII ACGT 2 cut(s) 45, 149
MalI GATC 5 cut(s) 7, 135, 215, 221, 242
MboI GATC 5 cut(s) 5, 133, 213, 219, 240
MflI RGATCY 2 cut(s) 5, 213
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 2 cut(s) 99, 346
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 3 cut(s) 35, 106, 327
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 2 cut(s) 364, 439
NdeI CATATG 2 cut(s) 229, 379
NdeII GATC 5 cut(s) 5, 133, 213, 219, 240
NlaIII CATG 2 cut(s) 247, 369
NlaIV GGNNCC 1 cut(s) 215
NspI RCATGY 1 cut(s) 369
OliI CACNNNNGTG 1 cut(s) 439
PagI TCATGA 1 cut(s) 243
PfeI GAWTC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 2 cut(s) 62, 383
PsuI RGATCY 2 cut(s) 5, 213
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 2 cut(s) 364, 439
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 5 cut(s) 5, 133, 213, 219, 240
Sau96I GGNCC 2 cut(s) 62, 383
SduI GDGCHC 1 cut(s) 189
SetI ASST 5 cut(s) 48, 152, 189, 413, 460
SinI GGWCC 1 cut(s) 383
SmiMI CAYNNNNRTG 2 cut(s) 364, 439
SnaBI TACGTA 1 cut(s) 150
Sse9I AATT 2 cut(s) 99, 346
SsiI CCGC 1 cut(s) 461
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 189
TaaI ACNGT 3 cut(s) 90, 302, 452
TaiI ACGT 2 cut(s) 48, 152
TaqI TCGA 1 cut(s) 48
TasI AATT 2 cut(s) 99, 346
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 3 cut(s) 93, 280, 305
TspDTI ATGAA 1 cut(s) 348
TspRI CASTG 3 cut(s) 93, 280, 305
VpaK11BI GGWCC 1 cut(s) 383
XceI RCATGY 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.