RLG00000025592

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009694
Physical Location & Seq
Forward (+)
46971122 .. 46971948
827 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025592

Sequence Viewer

Length: 744 bp
ATGTGCGTGTACAAGTACAAATACAGCAATGGGAGCAAAGGGGAGGCTCGGGTTTCAAGTGATATCTTTACTTTCCCAGACACTAACCAAACCTCTATGAACTTCAGGGTAGCTTTTGGTTGTGGAACTGATAACCAGAATATCAGTTTTGGTCAAAATGATGGACCTAAGAATCCGATAGCTGGCATATTTGGGTTATGTATGGGGCAGCGGTCAATCCTAAATCAACTAGCTAAAGAGACCAATCGGCGCTTCTCTTACTGTCTGCCGTCATCAACACCACCAAAGGAAACTTATACGACATTAAGCTTTGGTATAAGCATTACAGAAAAGCTCCTTCATATAGATCCAGCACTTTTCAAGCTGAAATATGGCACTTTTGGTGGATGTTTCATAGACACAGGTACTCTTTACTCTATGCCTGTTAAAGGTGCATATACAATTTTGAGAGAAGAGATGGTGAAGTATGTTATGCAGCATTATGGACAGCGTCCAACAAAGCAAGGTATTTTTTATCTTTGTTATGGATCGTTAGGAGGGGGAAATAAGACTTTGCCATCAATGACATTCCACTTTAAAAGAGCAAACCTTGTGCTGAATTCGAAAGCTGTGTTCGAACAATTCAATTCTAATTTCTGCATGGCTATATTCCCTACTAGTGATTTAGGAATCAATATCCTAGGAGCATTTCAGCAAGCAAATCATCGGTTCTTGTTTGATGTACCGAAATTATCTCTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

248

Amino Acids

27.6

Weight (kDa)

9.27

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 2 - 93 3e-16 Xylanase inhibitor N-terminal
TAXi_C PF14541 105 - 243 1.5e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 211
AclWI GGATC 2 cut(s) 341, 535
AcsI RAATTY 1 cut(s) 598
AcuI CTGAAG 1 cut(s) 88
AfaI GTAC 4 cut(s) 11, 17, 406, 723
AfiI CCNNNNNNNGG 2 cut(s) 182, 428
AgsI TTSAA 3 cut(s) 57, 361, 625
AhlI ACTAGT 1 cut(s) 656
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 7 cut(s) 113, 182, 233, 309, 334, 364, 608
AluI AGCT 7 cut(s) 113, 182, 233, 309, 334, 364, 608
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 2 cut(s) 341, 535
Ama87I CYCGRG 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 208, 475
ApoI RAATTY 1 cut(s) 598
AspA2I CCTAGG 1 cut(s) 679
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 472
AsuII TTCGAA 2 cut(s) 602, 615
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 164
AvrII CCTAGG 1 cut(s) 679
BbvI GCAGC 2 cut(s) 220, 487
BccI CCATC 3 cut(s) 155, 451, 565
BceAI ACGGC 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 233
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 3 cut(s) 230, 657, 680
BfoI RGCGCY 1 cut(s) 253
BisI GCNGC 2 cut(s) 209, 476
BlnI CCTAGG 1 cut(s) 679
BlsI GCNGC 2 cut(s) 210, 477
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 164
Bpu14I TTCGAA 2 cut(s) 602, 615
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 679
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 428
Bse3DI GCAATG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 679
BseGI GGATG 1 cut(s) 392
BseLI CCNNNNNNNGG 2 cut(s) 182, 428
BseMI GCAATG 1 cut(s) 34
BseXI GCAGC 2 cut(s) 220, 487
BsiHKCI CYCGRG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 182, 428
BsmAI GTCTC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 233
BsoBI CYCGRG 1 cut(s) 48
Bsp119I TTCGAA 2 cut(s) 602, 615
Bsp1407I TGTACA 1 cut(s) 9
Bsp143I GATC 2 cut(s) 346, 527
BspACI CCGC 1 cut(s) 211
BspPI GGATC 2 cut(s) 341, 535
BspT104I TTCGAA 2 cut(s) 602, 615
BspTNI GGTCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 34
BsrGI TGTACA 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 679
BssMI GATC 2 cut(s) 346, 527
BssT1I CCWWGG 1 cut(s) 679
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 447
BstAUI TGTACA 1 cut(s) 9
BstBI TTCGAA 2 cut(s) 602, 615
BstC8I GCNNGC 2 cut(s) 184, 696
BstDEI CTNAG 1 cut(s) 168
BstENI CCTNNNNNAGG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 392
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 2 cut(s) 349, 530
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 346, 527
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 220, 487
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BtsCI GGATG 1 cut(s) 392
Cac8I GCNNGC 2 cut(s) 184, 696
CfoI GCGC 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 479
Csp6I GTAC 4 cut(s) 10, 16, 405, 722
CviAII CATG 1 cut(s) 640
CviJI RGCY 9 cut(s) 47, 113, 182, 233, 309, 334, 364, 608, 644
CviKI_1 RGCY 9 cut(s) 47, 113, 182, 233, 309, 334, 364, 608, 644
CviQI GTAC 4 cut(s) 10, 16, 405, 722
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 348, 529
DpnII GATC 2 cut(s) 346, 527
DraI TTTAAA 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 679
Eco31I GGTCTC 1 cut(s) 233
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 598
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 679
FaeI CATG 1 cut(s) 643
FatI CATG 1 cut(s) 639
Fnu4HI GCNGC 2 cut(s) 209, 476
FokI GGATG 1 cut(s) 399
Fsp4HI GCNGC 2 cut(s) 209, 476
FspBI CTAG 3 cut(s) 230, 657, 680
GlaI GCGC 1 cut(s) 251
GluI GCNGC 2 cut(s) 209, 476
HaeII RGCGCY 1 cut(s) 253
HgaI GACGC 1 cut(s) 479
HhaI GCGC 1 cut(s) 252
Hin1II CATG 1 cut(s) 643
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 2 cut(s) 172, 669
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 177
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 3 cut(s) 434, 475, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 643
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 2 cut(s) 346, 527
LmnI GCTCC 3 cut(s) 33, 339, 683
LpnPI CCDG 7 cut(s) 90, 91, 149, 168, 363, 387, 435
Lsp1109I GCAGC 2 cut(s) 220, 487
MaeI CTAG 3 cut(s) 230, 657, 680
MalI GATC 2 cut(s) 348, 529
MboI GATC 2 cut(s) 346, 527
MboII GAAGA 1 cut(s) 464
MflI RGATCY 1 cut(s) 346
MluCI AATT 6 cut(s) 441, 598, 620, 625, 631, 728
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 3 cut(s) 37, 103, 530
MseI TTAA 3 cut(s) 305, 426, 576
MspA1I CMGCKG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 2 cut(s) 346, 527
NlaIII CATG 1 cut(s) 643
NspV TTCGAA 2 cut(s) 602, 615
PfeI GAWTC 2 cut(s) 172, 669
PflFI GACNNNGTC 1 cut(s) 489
PkrI GCNGC 2 cut(s) 210, 477
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 346
PsyI GACNNNGTC 1 cut(s) 489
RsaI GTAC 4 cut(s) 11, 17, 406, 723
RsaNI GTAC 4 cut(s) 10, 16, 405, 722
SaqAI TTAA 3 cut(s) 305, 426, 576
SatI GCNGC 2 cut(s) 209, 476
Sau3AI GATC 2 cut(s) 346, 527
Sau96I GGNCC 1 cut(s) 164
SfuI TTCGAA 2 cut(s) 602, 615
SinI GGWCC 1 cut(s) 164
SpeI ACTAGT 1 cut(s) 656
Sse9I AATT 6 cut(s) 441, 598, 620, 625, 631, 728
SsiI CCGC 1 cut(s) 211
SspMI CTAG 3 cut(s) 230, 657, 680
StyI CCWWGG 1 cut(s) 679
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 2 cut(s) 602, 615
TasI AATT 6 cut(s) 441, 598, 620, 625, 631, 728
TatI WGTACW 2 cut(s) 9, 15
TfiI GAWTC 2 cut(s) 172, 669
Tru1I TTAA 3 cut(s) 305, 426, 576
Tru9I TTAA 3 cut(s) 305, 426, 576
TseI GCWGC 2 cut(s) 208, 475
TspDTI ATGAA 3 cut(s) 113, 329, 382
Tth111I GACNNNGTC 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 426
XapI RAATTY 1 cut(s) 598
XmaJI CCTAGG 1 cut(s) 679
XspI CTAG 3 cut(s) 230, 657, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.