Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009694

Physical Location & Seq

Genomic Coordinates Forward (+)

2198750 .. 2200093

Gene Structure 1344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGTGGAGTATAATATTGGCCCTGCTCTTGTTTATGCTCACTTTAACCTTGCCCACTAGTGGTTTTAGCATCCCGCTCATCCCAATCGATTCAGTTATCCTCCCAAAGAATCACACTCCAGAAGAAAGGCATCACCTACTGGCTGAAATATCAAGAAATCAGGTTCCTAACCTAATGTCTTTGAGTTCTGGCAGGAAAAACAATCCAGCAGAGGAGTTCATGAATGATCTACCAAGTATTATACAGATACCAAATGAACAACTTCTAATCAGTTACTATGTAACGCGAATAGCCATTGGGTCACAGCTATATACACCATACTTAGCAGTGACTACAGCCTTTGCTGATACATGGGTTCAATGTGATGGGTGCATCAATTGTTTCCCTGTAGTGGGAGGAAACTTCAAATATAAACAATCTACATCATTCCAATACTTGCAATGTAGGGACCCCCTTTGTGTTCCAAGGTTATGTGATCATGGAGGGTTGTGTAAATACAATATTGCATATGGCGCTGGCAAAAAATCTGAAGGTTGGGAATCAAATGATACCTTCACTTCCCCAAGCACCAACCAAACCTCTATCAAGTGGAGGGTAGCCTTTGGTTGTGCGTATGACAACCAGAATTGGAGTCTTGGTGATAACAATCTGATAGCTGGAATATTTGGGTTAGGTTGGGGGCAGCAGTCAATCCTAAAACAACTAGTTAAGGAGACCAACCTGCGCTTCTCTTACTGCTTACCATCATCAACAACACCAAGTAAAACTCATCCACTGCTAAGTTTTGGCAAGGATGCAAAAATAAGTGGAAGTGTACAAACAACAGATATATTGCTTGTACAAAATAGGTCTATATACAATGTGAATCTTTTAGGCATTAGCATAGCAGGAAAGCGCCTTAATATAGATCCGGCACTATTCAAGGTGAAGAAGGGCACTACTGGTGGTGGGTTTATCATTAACACAGGTACTCCTTACACTCATCTTGTTCGAGGTGCATATACACTATTAAGAGAAGAAGTGGTGCAGTATATGATGAATCAATGTGGAAAACGCCCAACAAGAAAAGGTGTCTTTGATGTTTGTTATGAACCATTACGAAATGTGACTTTGCCATCAATGACATACCACTTCAAAGGAGCAAACCTTGTGCTGGATTCAAAAGCTGTTTTTGAGGACTTCAATTCAACTATCTGCATGGCTATACTGCCCGTTAGCGATGCAGGAATAAACGAACTAGGTGCATTTCAGCAGACAAATCATCGGTTCTTGTTTGAACTAGGCAAAAAATCCTGGTTTTTAAATAAACCTACTTTATCATTTGCACCAGAGATATGCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

448

Amino Acids

49.76

Weight (kDa)

8.77

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	93 - 263	2.1e-26	Xylanase inhibitor N-terminal
Asp	PF00026	93 - 414	7.8e-06	Eukaryotic aspartyl protease
TAXi_C	PF14541	286 - 430	1.5e-22	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04020 FvH4_6g04030 FvH4_6g04030 FvH4_6g04030 FvH4_6g04040
rosa_chinensis	RchiOBHm_Chr3g0452601
rosa_laevigata	RLG00000025579 RLG00000025580 RLG00000025590 RLG00000025592
rosa_roxburghii	Rroxscaffold_6G00429640
rosa_rugosa	Rorug02G0641600
rosa_samantha	Rh3BG045500 Rh3BG046300 Rh3BG046400 Rh3CG044100 Rh3CG045000 Rh3CG045100 Rh3DG044800 Rh3DG045300 Rh3DG045400
rosa_wichuraiana	Rw3G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	729
AccBSI	CCGCTC	1 cut(s)	76
AccII	CGCG	1 cut(s)	286
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	902
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	3 cut(s)	816, 840, 970
AfiI	CCNNNNNNNGG	4 cut(s)	59, 391, 392, 1153
AgsI	TTSAA	8 cut(s)	359, 406, 922, 1135, 1161, 1183, 1188, 1277
AhlI	ACTAGT	2 cut(s)	56, 703
AjnI	CCWGG	1 cut(s)	1292
AjuI	GAANNNNNNNTTGG	2 cut(s)	710, 742
AluBI	AGCT	3 cut(s)	307, 656, 1166
AluI	AGCT	3 cut(s)	307, 656, 1166
Alw26I	GTCTC	1 cut(s)	707
AlwI	GGATC	1 cut(s)	902
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	682
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	3 cut(s)	515, 726, 897
AspS9I	GGNCC	2 cut(s)	19, 448
AsuHPI	GGTGA	3 cut(s)	125, 650, 937
AvaII	GGWCC	1 cut(s)	448
BaeGI	GKGCMC	1 cut(s)	938
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
BbvI	GCAGC	1 cut(s)	694
BccI	CCATC	3 cut(s)	359, 751, 1123
BcgI	CGANNNNNNTGC	2 cut(s)	1223, 1257
BciT130I	CCWGG	1 cut(s)	1294
BclI	TGATCA	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	707
BcuI	ACTAGT	2 cut(s)	56, 703
BfaI	CTAG	4 cut(s)	57, 704, 1238, 1280
BfmI	CTRYAG	2 cut(s)	333, 387
BfoI	RGCGCY	2 cut(s)	516, 898
BfuAI	ACCTGC	1 cut(s)	729
BisI	GCNGC	1 cut(s)	683
BlsI	GCNGC	1 cut(s)	684
Bme1390I	CCNGG	1 cut(s)	1294
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	19, 448
BmiI	GGNNCC	3 cut(s)	165, 449, 450
BmrFI	CCNGG	1 cut(s)	1294
BmsI	GCATC	5 cut(s)	78, 139, 381, 784, 1210
BpmI	CTGGAG	1 cut(s)	102
Bsa29I	ATCGAT	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	464
BsaXI	ACNNNNNCTCC	4 cut(s)	622, 652, 955, 985
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 391, 392, 1153
Bse1I	ACTGG	2 cut(s)	144, 946
Bse3DI	GCAATG	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	1294
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	4 cut(s)	69, 78, 769, 799
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	4 cut(s)	59, 391, 392, 1153
BseMI	GCAATG	1 cut(s)	446
BseNI	ACTGG	2 cut(s)	144, 946
BseRI	GAGGAG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	938
BseXI	GCAGC	1 cut(s)	694
BsgI	GTGCAG	1 cut(s)	1046
Bsh1236I	CGCG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	911
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	4 cut(s)	59, 391, 392, 1153
BsmAI	GTCTC	1 cut(s)	707
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	938
Bsp1407I	TGTACA	2 cut(s)	814, 838
Bsp143I	GATC	3 cut(s)	226, 475, 907
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	20
BspDI	ATCGAT	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	165, 449, 450
BspMI	ACCTGC	1 cut(s)	729
BspPI	GGATC	1 cut(s)	902
BspTNI	GGTCTC	1 cut(s)	707
BsrBI	CCGCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	446
BsrGI	TGTACA	2 cut(s)	814, 838
BsrI	ACTGG	2 cut(s)	144, 946
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	3 cut(s)	226, 475, 907
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	1 cut(s)	1294
BstAUI	TGTACA	2 cut(s)	814, 838
BstC8I	GCNNGC	1 cut(s)	517
BstDEI	CTNAG	2 cut(s)	322, 779
BstF5I	GGATG	4 cut(s)	69, 78, 769, 799
BstFNI	CGCG	1 cut(s)	286
BstH2I	RGCGCY	2 cut(s)	516, 898
BstHHI	GCGC	3 cut(s)	515, 726, 897
BstKTI	GATC	3 cut(s)	229, 478, 910
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	3 cut(s)	226, 475, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	1 cut(s)	1294
BstSCI	CCNGG	1 cut(s)	1292
BstSFI	CTRYAG	2 cut(s)	333, 387
BstSLI	GKGCMC	1 cut(s)	938
BstUI	CGCG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	694
BstX2I	RGATCY	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	907
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	1233
BtsCI	GGATG	4 cut(s)	69, 78, 769, 799
BtsI	GCAGTG	2 cut(s)	333, 773
BtsIMutI	CAGTG	2 cut(s)	333, 773
BveI	ACCTGC	1 cut(s)	729
Cac8I	GCNNGC	1 cut(s)	517
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	3 cut(s)	515, 726, 897
Cfr13I	GGNCC	2 cut(s)	19, 448
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	3 cut(s)	815, 839, 969
CviAII	CATG	4 cut(s)	220, 351, 479, 1198
CviJI	RGCY	9 cut(s)	20, 143, 293, 307, 338, 599, 656, 1166, 1202
CviKI_1	RGCY	9 cut(s)	20, 143, 293, 307, 338, 599, 656, 1166, 1202
CviQI	GTAC	3 cut(s)	815, 839, 969
DdeI	CTNAG	2 cut(s)	322, 779
DpnI	GATC	3 cut(s)	228, 477, 909
DpnII	GATC	3 cut(s)	226, 475, 907
DraI	TTTAAA	1 cut(s)	1302
Eco130I	CCWWGG	1 cut(s)	464
Eco31I	GGTCTC	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	1292
EcoT14I	CCWWGG	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	4 cut(s)	223, 354, 482, 1201
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	4 cut(s)	219, 350, 478, 1197
FauI	CCCGC	1 cut(s)	81
FauNDI	CATATG	1 cut(s)	508
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	1 cut(s)	683
FokI	GGATG	4 cut(s)	56, 65, 756, 806
Fsp4HI	GCNGC	1 cut(s)	683
FspBI	CTAG	4 cut(s)	57, 704, 1238, 1280
GlaI	GCGC	3 cut(s)	514, 725, 896
GluI	GCNGC	1 cut(s)	683
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	2 cut(s)	516, 898
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	911
HhaI	GCGC	3 cut(s)	515, 726, 897
Hin1II	CATG	4 cut(s)	223, 354, 482, 1201
Hin6I	GCGC	3 cut(s)	513, 724, 895
HinP1I	GCGC	3 cut(s)	513, 724, 895
HinfI	GANTC	7 cut(s)	89, 109, 539, 631, 865, 1039, 1157
HpaII	CCGG	1 cut(s)	911
HphI	GGTGA	3 cut(s)	125, 650, 937
Hpy166II	GTNNAC	1 cut(s)	815
Hpy188I	TCNGA	2 cut(s)	529, 651
Hpy188III	TCNNGA	3 cut(s)	119, 153, 220
Hpy8I	GTNNAC	1 cut(s)	815
HpyAV	CCTTC	3 cut(s)	524, 562, 925
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	2 cut(s)	322, 779
Hsp92II	CATG	4 cut(s)	223, 354, 482, 1201
HspAI	GCGC	3 cut(s)	513, 724, 895
KflI	GGGWCCC	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	226, 475, 907
LmnI	GCTCC	1 cut(s)	1139
Lsp1109I	GCAGC	1 cut(s)	694
LweI	GCATC	5 cut(s)	78, 139, 381, 784, 1210
MaeI	CTAG	4 cut(s)	57, 704, 1238, 1280
MaeIII	GTNAC	5 cut(s)	272, 280, 300, 328, 1105
MalI	GATC	3 cut(s)	228, 477, 909
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	3 cut(s)	226, 475, 907
MboII	GAAGA	3 cut(s)	134, 940, 1028
MfeI	CAATTG	1 cut(s)	376
MflI	RGATCY	1 cut(s)	907
MhlI	GDGCHC	1 cut(s)	938
MluCI	AATT	3 cut(s)	376, 625, 1183
MlyI	GAGTC	1 cut(s)	640
MnlI	CCTC	8 cut(s)	110, 205, 389, 476, 585, 589, 986, 1168
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	6 cut(s)	44, 708, 900, 960, 1010, 1301
MspI	CCGG	1 cut(s)	911
MspR9I	CCNGG	1 cut(s)	1294
MunI	CAATTG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	1294
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	3 cut(s)	226, 475, 907
NlaIII	CATG	4 cut(s)	223, 354, 482, 1201
NlaIV	GGNNCC	3 cut(s)	165, 449, 450
NmuCI	GTSAC	3 cut(s)	300, 328, 1105
PagI	TCATGA	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	6 cut(s)	89, 109, 539, 865, 1039, 1157
PkrI	GCNGC	1 cut(s)	684
PleI	GAGTC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	639
PpuMI	RGGWCCY	1 cut(s)	448
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	1292
PspGI	CCWGG	1 cut(s)	1292
PspN4I	GGNNCC	3 cut(s)	165, 449, 450
PspPI	GGNCC	2 cut(s)	19, 448
PspPPI	RGGWCCY	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	907
RsaI	GTAC	3 cut(s)	816, 840, 970
RsaNI	GTAC	3 cut(s)	815, 839, 969
SaqAI	TTAA	6 cut(s)	44, 708, 900, 960, 1010, 1301
SatI	GCNGC	1 cut(s)	683
Sau3AI	GATC	3 cut(s)	226, 475, 907
Sau96I	GGNCC	2 cut(s)	19, 448
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	1 cut(s)	1294
SduI	GDGCHC	1 cut(s)	938
SfaNI	GCATC	5 cut(s)	78, 139, 381, 784, 1210
SfcI	CTRYAG	2 cut(s)	333, 387
SinI	GGWCC	1 cut(s)	448
SpeI	ACTAGT	2 cut(s)	56, 703
Sse9I	AATT	3 cut(s)	376, 625, 1183
SsiI	CCGC	1 cut(s)	74
SspI	AATATT	3 cut(s)	15, 502, 663
SspMI	CTAG	4 cut(s)	57, 704, 1238, 1280
StyD4I	CCNGG	1 cut(s)	1292
StyI	CCWWGG	1 cut(s)	464
TaqI	TCGA	2 cut(s)	87, 991
TasI	AATT	3 cut(s)	376, 625, 1183
TatI	WGTACW	2 cut(s)	814, 838
TfiI	GAWTC	6 cut(s)	89, 109, 539, 865, 1039, 1157
Tru1I	TTAA	6 cut(s)	44, 708, 900, 960, 1010, 1301
Tru9I	TTAA	6 cut(s)	44, 708, 900, 960, 1010, 1301
TscAI	CASTG	2 cut(s)	333, 780
TseFI	GTSAC	3 cut(s)	300, 328, 1105
TseI	GCWGC	1 cut(s)	682
Tsp45I	GTSAC	3 cut(s)	300, 328, 1105
TspDTI	ATGAA	5 cut(s)	208, 236, 270, 1052, 1104
TspRI	CASTG	2 cut(s)	333, 780
VpaK11BI	GGWCC	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	4 cut(s)	57, 704, 1238, 1280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.