Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008784

Physical Location & Seq

Genomic Coordinates Forward (+)

3213858 .. 3216387

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCGCAGGAGCAAGAGTTGAATGTGTACAGCTCTTCTGGTTCTCCAACAATCGAGGATTCGAATCCTTGTCCCATCTGCCTCGCACCCATCTTTCAAATTTCTTACCTCGACAAATGTTTCCATAAGTTCTGTTACAAATGCATATTGCAATGGACCAAAGTTGTTGCTAGCAAGCAGTCTGACCCGTCTTCTTCCATAAAGTGTCCTTTGTGCAAGACAGATAATTTTTCAATAATACATGGATATGATGGATGTTCGTTTCAAAAGCATTACATCAACCAGGATTCAAGGGATAGCTTTGTCTTATCAAGCGCTCACAAGTATAGGTTACAGTGCTACTATACTGAACCAGGTTTCTTAGACGACATTTTTGATGTATCACAGTATTGGAAGTCCTGCAAGTATCTGCAGCCAAACTGTTGGCTTCAAAGTTGGCTGAGAAGGGAAATCCAAGCACTTATGCAGGAAGAAGATGTTGAGATCATCATGCACCACGTACTTGGTGTGATTAAATCCGTAATGAGTCATAAGCAAAAAGGTCAGACGAAAACATTTGAAGCAAAACAAAGAGAATTTCAAGAGACAATCTCCGATGCAGCAAGGCCCTTCCTGACTACAAGAACTGACCGATTTGTAAATGAGGTGGAACTATTTCTTGCTTCAGGTTTAAACATTGAAGCATATGATGCTGTGTGCATGCAACGCTTAGGTTGGAGTGCCCGTGGAGTAACTTCCGAGACTGCTGTAGAAGGAGAACTTGCCGAGCACAGACCTGTTATCCCTTTCTTGCATATATTTGAAGACTTTGACAGCAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

275

Amino Acids

31.6

Weight (kDa)

5.5

Isoelectric Point (pI)

69.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4	PF00097	24 - 72	3e-08	Zinc finger, C3HC4 type (RING finger)
RING_XB3-XBAT31	PF24921	24 - 75	7.5e-06	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05250 AT3G05250 AT3G05250
fragaria_vesca	FvH4_6g05630
malus_domestica	MD04G1207100.v1.1 MD12G1221000.v1.1 MD12G1221200.v1.1
prunus_persica	Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1
pyrus_communis	pycom04g18310
rosa_chinensis	RchiOBHm_Chr3g0454381
rosa_laevigata	RLG00000025446 RLG00000025448
rosa_multiflora	Rmu_sc0000006.1_g000002 Rmu_sc0000006.1_g000019 Rmu_sc0007209.1_g000011
rosa_roxburghii	Rroxscaffold_6G00425150
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058600 Rh3BG060500
rosa_wichuraiana	Rw3G004530 Rw3G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	99, 575
AcuI	CTGAAG	1 cut(s)	648
AfaI	GTAC	2 cut(s)	29, 501
AfeI	AGCGCT	1 cut(s)	316
AjnI	CCWGG	2 cut(s)	282, 352
AluBI	AGCT	2 cut(s)	33, 300
AluI	AGCT	2 cut(s)	33, 300
Alw21I	GWGCWC	1 cut(s)	771
Alw26I	GTCTC	2 cut(s)	578, 734
Aor51HI	AGCGCT	1 cut(s)	316
AoxI	GGCC	1 cut(s)	605
ApeKI	GCWGC	2 cut(s)	412, 599
ApoI	RAATTY	2 cut(s)	99, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	156, 606
AsuII	TTCGAA	1 cut(s)	62
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	156
BaeGI	GKGCMC	1 cut(s)	724
BbsI	GAAGAC	2 cut(s)	183, 810
Bbv12I	GWGCWC	1 cut(s)	771
BbvI	GCAGC	2 cut(s)	424, 611
BccI	CCATC	3 cut(s)	83, 98, 245
BciT130I	CCWGG	2 cut(s)	284, 354
BcoDI	GTCTC	2 cut(s)	578, 734
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	2 cut(s)	410, 747
BfoI	RGCGCY	1 cut(s)	318
BisI	GCNGC	2 cut(s)	413, 600
BlsI	GCNGC	2 cut(s)	414, 601
Bme1390I	CCNGG	2 cut(s)	284, 354
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	156, 606
BmrFI	CCNGG	2 cut(s)	284, 354
BmsI	GCATC	2 cut(s)	586, 679
BmtI	GCTAGC	1 cut(s)	174
BpiI	GAAGAC	2 cut(s)	183, 810
BplI	GAGNNNNNCTC	2 cut(s)	575, 607
Bpu10I	CCTNAGC	1 cut(s)	709
Bpu14I	TTCGAA	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	724
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 709, 739
Bse3DI	GCAATG	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	63
BseBI	CCWGG	2 cut(s)	284, 354
BseDI	CCNNGG	1 cut(s)	724
BseGI	GGATG	1 cut(s)	260
BseJI	GATNNNNATC	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	2 cut(s)	424, 611
BshFI	GGCC	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	771
BslFI	GGGAC	1 cut(s)	57
BsmAI	GTCTC	2 cut(s)	578, 734
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	607
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	724, 771
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	483
BspANI	GGCC	1 cut(s)	607
BspCNI	CTCAG	1 cut(s)	432
BspMAI	CTGCAG	1 cut(s)	414
BspOI	GCTAGC	1 cut(s)	174
BspQI	GCTCTTC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	158
BsrGI	TGTACA	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	724
BssMI	GATC	1 cut(s)	483
Bst2UI	CCWGG	2 cut(s)	284, 354
Bst4CI	ACNGT	3 cut(s)	336, 387, 422
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstAUI	TGTACA	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	499
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	172, 176, 701
BstDEI	CTNAG	3 cut(s)	361, 440, 709
BstDSI	CCRYGG	1 cut(s)	724
BstF5I	GGATG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	1 cut(s)	486
BstMAI	GTCTC	2 cut(s)	578, 734
BstMBI	GATC	1 cut(s)	483
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 705
BstNI	CCWGG	2 cut(s)	284, 354
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	2 cut(s)	282, 352
BstSFI	CTRYAG	2 cut(s)	410, 747
BstSLI	GKGCMC	1 cut(s)	724
BstV1I	GCAGC	2 cut(s)	424, 611
BstV2I	GAAGAC	2 cut(s)	183, 810
BstXI	CCANNNNNNTGG	2 cut(s)	423, 503
BsuRI	GGCC	1 cut(s)	607
BtgI	CCRYGG	1 cut(s)	724
BtsCI	GGATG	1 cut(s)	260
BtsI	GCAGTG	1 cut(s)	823
BtsIMutI	CAGTG	2 cut(s)	341, 823
Cac8I	GCNNGC	3 cut(s)	172, 176, 701
CfoI	GCGC	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	156, 606
CsiI	ACCWGGT	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	28, 500
CviAII	CATG	3 cut(s)	242, 490, 700
CviJI	RGCY	6 cut(s)	33, 300, 415, 427, 439, 607
CviKI_1	RGCY	6 cut(s)	33, 300, 415, 427, 439, 607
CviQI	GTAC	2 cut(s)	28, 500
DdeI	CTNAG	3 cut(s)	361, 440, 709
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
DraI	TTTAAA	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	156
Eco47III	AGCGCT	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	648
EcoO109I	RGGNCCY	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	282, 352
EcoT22I	ATGCAT	1 cut(s)	146
FaeI	CATG	3 cut(s)	245, 493, 703
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	3 cut(s)	241, 489, 699
FauNDI	CATATG	1 cut(s)	685
Fnu4HI	GCNGC	2 cut(s)	413, 600
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	413, 600
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	2 cut(s)	413, 600
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	607
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	3 cut(s)	245, 493, 703
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	4 cut(s)	59, 64, 287, 526
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	184, 546, 595, 739
Hpy188III	TCNNGA	2 cut(s)	581, 613
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	438, 619, 746
HpyCH4III	ACNGT	3 cut(s)	336, 387, 422
HpyCH4IV	ACGT	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 705
HpyF3I	CTNAG	3 cut(s)	361, 440, 709
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	3 cut(s)	245, 493, 703
HspAI	GCGC	1 cut(s)	315
Kzo9I	GATC	1 cut(s)	483
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	2 cut(s)	424, 611
LweI	GCATC	2 cut(s)	586, 679
MabI	ACCWGGT	1 cut(s)	352
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	3 cut(s)	134, 330, 730
MalI	GATC	1 cut(s)	485
MboI	GATC	1 cut(s)	483
MboII	GAAGA	6 cut(s)	27, 183, 186, 482, 485, 815
MhlI	GDGCHC	2 cut(s)	724, 771
MluCI	AATT	3 cut(s)	99, 226, 575
MlyI	GAGTC	1 cut(s)	535
MmeI	TCCRAC	2 cut(s)	71, 695
MnlI	CCTC	4 cut(s)	49, 92, 119, 637
Mph1103I	ATGCAT	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	2 cut(s)	513, 671
MslI	CAYNNNNRTG	1 cut(s)	246
MspR9I	CCNGG	2 cut(s)	284, 354
MssI	GTTTAAAC	1 cut(s)	672
MvaI	CCWGG	2 cut(s)	284, 354
MwoI	GCNNNNNNNGC	2 cut(s)	689, 705
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	1 cut(s)	483
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	3 cut(s)	245, 493, 703
NmeAIII	GCCGAG	1 cut(s)	790
NsiI	ATGCAT	1 cut(s)	146
NspI	RCATGY	1 cut(s)	703
NspV	TTCGAA	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	703
PciSI	GCTCTTC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	3 cut(s)	59, 64, 287
PkrI	GCNGC	2 cut(s)	414, 601
PleI	GAGTC	1 cut(s)	534
PmeI	GTTTAAAC	1 cut(s)	672
PpsI	GAGTC	1 cut(s)	534
Ppu21I	YACGTR	1 cut(s)	499
Psp6I	CCWGG	2 cut(s)	282, 352
PspGI	CCWGG	2 cut(s)	282, 352
PspPI	GGNCC	2 cut(s)	156, 606
PstI	CTGCAG	1 cut(s)	414
RsaI	GTAC	2 cut(s)	29, 501
RsaNI	GTAC	2 cut(s)	28, 500
RseI	CAYNNNNRTG	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	513, 671
SatI	GCNGC	2 cut(s)	413, 600
Sau3AI	GATC	1 cut(s)	483
Sau96I	GGNCC	2 cut(s)	156, 606
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	2 cut(s)	284, 354
SduI	GDGCHC	2 cut(s)	724, 771
SexAI	ACCWGGT	1 cut(s)	352
SfaNI	GCATC	2 cut(s)	586, 679
SfcI	CTRYAG	2 cut(s)	410, 747
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	246
SphI	GCATGC	1 cut(s)	703
Sse9I	AATT	3 cut(s)	99, 226, 575
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	282, 352
TaaI	ACNGT	3 cut(s)	336, 387, 422
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	54, 62, 111
TaqII	GACCGA	1 cut(s)	645
TasI	AATT	3 cut(s)	99, 226, 575
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	3 cut(s)	59, 64, 287
Tru1I	TTAA	2 cut(s)	513, 671
Tru9I	TTAA	2 cut(s)	513, 671
TscAI	CASTG	2 cut(s)	341, 823
TseI	GCWGC	2 cut(s)	412, 599
TspGWI	ACGGA	1 cut(s)	508
TspRI	CASTG	2 cut(s)	341, 823
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	2 cut(s)	99, 575
XceI	RCATGY	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	1 cut(s)	171
Zsp2I	ATGCAT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.