Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000006.1

Orthogroup ID

OG0008784

Physical Location & Seq

Genomic Coordinates Reverse (-)

6083 .. 8609

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000006.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgacggaatccggtcaccagtccggcagtcggatttgggattcctgtgactggttgtcggattccggtgactggacgccggagtcaggtcacaggtcgccggagtcccgtcacctgtcaccggagaccgcgaccggccactggtcaccgagttgggtaaccactaaccagaagtggcaccactcattcactcactcacatatggagagttatggagctttcacagagaaattccttctgcgaccaagctcttcatctcatgatcttcccttgagtggcctcacctttgctgtcaaagatattcataagcaaaaatgtcagacgataacatatgaagtaaaacaaagagaatttcaagaggcaatctccgatgcagcaaggcgtttcctagccacaagaactgaccgatttgtgaatgaggtggaactatttcttgcttcaggtttaaacattgaagcatatgatgctgtgtgcattcagcgtttaggttggagtgctcgcggagtaactactgaggccactgcagaaggagaaattgccgagcacagacctgttatcccttacttgcatatttttgatgactttgacagcagtgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

199

Amino Acids

22.58

Weight (kDa)

5.48

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05250 AT3G05250 AT3G05250
fragaria_vesca	FvH4_6g05630
malus_domestica	MD04G1207100.v1.1 MD12G1221000.v1.1 MD12G1221200.v1.1
prunus_persica	Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1
pyrus_communis	pycom04g18310
rosa_chinensis	RchiOBHm_Chr3g0454381
rosa_laevigata	RLG00000025446 RLG00000025448
rosa_multiflora	Rmu_sc0000006.1_g000002 Rmu_sc0000006.1_g000019 Rmu_sc0007209.1_g000011
rosa_roxburghii	Rroxscaffold_6G00425150
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058600 Rh3BG060500
rosa_wichuraiana	Rw3G004530 Rw3G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	177
AccII	CGCG	2 cut(s)	131, 501
AciI	CCGC	2 cut(s)	129, 501
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	2 cut(s)	230, 350
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	77
AfiI	CCNNNNNNNGG	7 cut(s)	30, 51, 72, 86, 121, 141, 275
AgsI	TTSAA	2 cut(s)	356, 455
AhdI	GACNNNNNGTC	1 cut(s)	55
AluBI	AGCT	2 cut(s)	218, 249
AluI	AGCT	2 cut(s)	218, 249
Alw21I	GWGCWC	2 cut(s)	499, 546
Alw26I	GTCTC	1 cut(s)	119
AoxI	GGCC	3 cut(s)	136, 277, 516
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	230, 350
Asp700I	GAANNNNTTC	1 cut(s)	429
AsuHPI	GGTGA	6 cut(s)	8, 80, 104, 111, 138, 274
BanI	GGYRCC	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	499, 546
BbvI	GCAGC	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	522
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	179
BmsI	GCATC	2 cut(s)	361, 454
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpuEI	CTTGAG	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	119
BsaWI	WCCGGW	3 cut(s)	11, 65, 121
Bsc4I	CCNNNNNNNGG	7 cut(s)	30, 51, 72, 86, 121, 141, 275
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	4 cut(s)	19, 56, 77, 146
BseLI	CCNNNNNNNGG	7 cut(s)	30, 51, 72, 86, 121, 141, 275
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	4 cut(s)	19, 56, 77, 146
BseXI	GCAGC	1 cut(s)	386
Bsh1236I	CGCG	2 cut(s)	131, 501
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	138, 279, 518
BshNI	GGYRCC	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	499, 546
BsiSI	CCGG	7 cut(s)	12, 24, 66, 80, 101, 122, 135
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	7 cut(s)	30, 51, 72, 86, 121, 141, 275
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	3 cut(s)	138, 279, 518
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	499, 546
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	2 cut(s)	129, 501
BspANI	GGCC	3 cut(s)	138, 279, 518
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	2 cut(s)	131, 501
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	179
BspMAI	CTGCAG	1 cut(s)	526
BspQI	GCTCTTC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	4 cut(s)	19, 56, 77, 146
BssAI	RCCGGY	1 cut(s)	134
BssMI	GATC	1 cut(s)	262
BssNI	GRCGYC	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	513
BstEII	GGTNACC	3 cut(s)	14, 144, 157
BstFNI	CGCG	2 cut(s)	131, 501
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	262
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstPI	GGTNACC	3 cut(s)	14, 144, 157
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	2 cut(s)	131, 501
BstV1I	GCAGC	1 cut(s)	386
BsuRI	GGCC	3 cut(s)	138, 279, 518
BtsI	GCAGTG	2 cut(s)	519, 598
BtsIMutI	CAGTG	3 cut(s)	139, 519, 598
Cac8I	GCNNGC	1 cut(s)	499
CciI	TCATGA	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	134
CseI	GACGC	1 cut(s)	85
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	6 cut(s)	138, 218, 249, 279, 392, 518
CviKI_1	RGCY	6 cut(s)	138, 218, 249, 279, 392, 518
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
DraI	TTTAAA	1 cut(s)	447
DrdI	GACNNNNNNGTC	1 cut(s)	82
DriI	GACNNNNNGTC	1 cut(s)	55
DseDI	GACNNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	256
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	423
Eco91I	GGTNACC	3 cut(s)	14, 144, 157
EcoO65I	GGTNACC	3 cut(s)	14, 144, 157
FaeI	CATG	1 cut(s)	263
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	259
FauNDI	CATATG	3 cut(s)	201, 331, 460
Fnu4HI	GCNGC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	3 cut(s)	138, 279, 518
HapII	CCGG	7 cut(s)	12, 24, 66, 80, 101, 122, 135
HgaI	GACGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	263
HinfI	GANTC	5 cut(s)	8, 41, 62, 83, 104
HpaII	CCGG	7 cut(s)	12, 24, 66, 80, 101, 122, 135
HphI	GGTGA	6 cut(s)	8, 80, 104, 111, 138, 274
Hpy188I	TCNGA	4 cut(s)	33, 61, 321, 370
Hpy188III	TCNNGA	2 cut(s)	260, 356
HpyAV	CCTTC	2 cut(s)	245, 521
HpyCH4V	TGCA	4 cut(s)	374, 474, 524, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	1 cut(s)	513
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	262
LguI	GCTCTTC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	2 cut(s)	361, 454
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	9 cut(s)	14, 47, 68, 89, 110, 117, 144, 157, 505
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	243, 257
MhlI	GDGCHC	2 cut(s)	499, 546
MluCI	AATT	3 cut(s)	230, 350, 534
MlyI	GAGTC	2 cut(s)	92, 113
MmeI	TCCRAC	3 cut(s)	11, 39, 470
MnlI	CCTC	4 cut(s)	290, 352, 412, 508
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	1 cut(s)	446
MspI	CCGG	7 cut(s)	12, 24, 66, 80, 101, 122, 135
MssI	GTTTAAAC	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	474
MvnI	CGCG	2 cut(s)	131, 501
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeI	CATATG	3 cut(s)	201, 331, 460
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	179
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	7 cut(s)	14, 47, 68, 89, 110, 117, 144
PagI	TCATGA	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	256
PctI	GAATGC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	8, 41, 62
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	2 cut(s)	91, 112
PmeI	GTTTAAAC	1 cut(s)	447
PpsI	GAGTC	2 cut(s)	91, 112
PspEI	GGTNACC	3 cut(s)	14, 144, 157
PspN4I	GGNNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	526
SapI	GCTCTTC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	1 cut(s)	262
SchI	GAGTC	2 cut(s)	92, 113
SduI	GDGCHC	2 cut(s)	499, 546
SfaNI	GCATC	2 cut(s)	361, 454
SfcI	CTRYAG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	3 cut(s)	230, 350, 534
SsiI	CCGC	2 cut(s)	129, 501
SspMI	CTAG	1 cut(s)	389
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	3 cut(s)	230, 350, 534
TfiI	GAWTC	3 cut(s)	8, 41, 62
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	3 cut(s)	146, 526, 598
TseFI	GTSAC	7 cut(s)	14, 47, 68, 89, 110, 117, 144
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	7 cut(s)	14, 47, 68, 89, 110, 117, 144
TspDTI	ATGAA	3 cut(s)	243, 293, 348
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	3 cut(s)	146, 526, 598
XapI	RAATTY	2 cut(s)	230, 350
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.