Rroxscaffold_6G00425150

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008784
Physical Location & Seq
Reverse (-)
46142733 .. 46144939
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425150.1

Sequence Viewer

Length: 825 bp
ATGGCACAGGAGCAAGAGTTGAATGCGTGCAGCTCTTCTGCTTCTCCATCATCAGAGGATTCGAATCCTTGTCCCATCTGCCTCGCACCCATCTTTCGACTTTCTTATCTTGACAAATGTTTGCATAAGTTCTGTTACAAATGCATATTACAATGGACTAAAGTTGTTGCTAGCAAGCAGTCTGACCCGTCTTCCTCCTTAAAGTGTCCTTTGTGCAAGACAGATAATTTTTCGATTATACATGGATATGATGGATGTTCGTTTCAAAAGCACTACATCAACCAGGATTCAGGGAATTGCTTTGTCTTATCAAGTGCTCACAAGTATAGGTTACAGTGCTATTATACTGAACCAGGTTTCTTAGATGACATTTTTGATACATCACGGTATTGGAAGTCCTTTAAGTATCTTCAGCCAAACTGTTGGCTTCAAAGTTGGTTGAGAAGGGAAATCCAAGCTCTTATGCAGGAAGAAGATGTTGACATCATCATGCACCACATATTTGGCGTGATTAAATCTCTCATGAGTCATAAGCAAAAATGTCAGACGATAACATATGAAGTAAAACAAAGAGAATTTCAAGAGGCAATCTCCGATGCAGCAAGGCGTTTCCTAGCCGCAAGAACTGACCGATTTGTGAATGAGGTGGAACTATTTCTTGCTTCAGGTTTAAACATTGAAGCATATGATGCTGTGTGCATTCAGCGTTTAGGTTGGAGTGCTCGCGGAGTAACTACTGAGGCCACTGCAGAAGGAGAAATTGCCGAGCACAGACCTGTTATCCCTTACTTGCATATTTTTGATGACTTTGACAGCAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4

Protein Analysis

274

Amino Acids

31.51

Weight (kDa)

5.73

Isoelectric Point (pI)

65.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4 PF00097 24 - 72 9.3e-09 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 726
AciI CCGC 2 cut(s) 618, 726
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 2 cut(s) 395, 648
AgsI TTSAA 5 cut(s) 22, 266, 431, 581, 680
AjnI CCWGG 2 cut(s) 282, 352
AluBI AGCT 2 cut(s) 33, 458
AluI AGCT 2 cut(s) 33, 458
Alw21I GWGCWC 3 cut(s) 319, 724, 771
AoxI GGCC 1 cut(s) 741
ApeKI GCWGC 2 cut(s) 30, 599
ApoI RAATTY 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 654
AsuII TTCGAA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 3 cut(s) 319, 724, 771
BbvI GCAGC 2 cut(s) 42, 611
BccI CCATC 4 cut(s) 55, 83, 98, 245
BciT130I CCWGG 2 cut(s) 284, 354
BfaI CTAG 2 cut(s) 171, 614
BfmI CTRYAG 1 cut(s) 747
BisI GCNGC 3 cut(s) 31, 600, 618
BlsI GCNGC 3 cut(s) 32, 601, 619
Bme1390I CCNGG 2 cut(s) 284, 354
BmrFI CCNGG 2 cut(s) 284, 354
BmsI GCATC 2 cut(s) 586, 679
BmtI GCTAGC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 575, 607
Bpu14I TTCGAA 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 63
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 2 cut(s) 284, 354
BseGI GGATG 1 cut(s) 260
BseJI GATNNNNATC 1 cut(s) 63
BseMII CTCAG 1 cut(s) 729
BseXI GCAGC 2 cut(s) 42, 611
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 726
BshFI GGCC 1 cut(s) 743
BsiHKAI GWGCWC 3 cut(s) 319, 724, 771
BslFI GGGAC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 2 cut(s) 28, 699
BsnI GGCC 1 cut(s) 743
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 3 cut(s) 319, 724, 771
BspACI CCGC 2 cut(s) 618, 726
BspANI GGCC 1 cut(s) 743
BspCNI CTCAG 1 cut(s) 730
BspFNI CGCG 1 cut(s) 726
BspHI TCATGA 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 751
BspOI GCTAGC 1 cut(s) 174
BspQI GCTCTTC 1 cut(s) 40
BspT104I TTCGAA 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 284, 354
Bst4CI ACNGT 3 cut(s) 336, 387, 422
Bst6I CTCTTC 1 cut(s) 40
BstAPI GCANNNNNTGC 1 cut(s) 689
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 4 cut(s) 28, 172, 176, 724
BstDEI CTNAG 2 cut(s) 361, 738
BstF5I GGATG 1 cut(s) 260
BstFNI CGCG 1 cut(s) 726
BstMWI GCNNNNNNNGC 1 cut(s) 689
BstNI CCWGG 2 cut(s) 284, 354
BstSCI CCNGG 2 cut(s) 282, 352
BstSFI CTRYAG 1 cut(s) 747
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 2 cut(s) 42, 611
BstV2I GAAGAC 1 cut(s) 183
BstXI CCANNNNNNTGG 2 cut(s) 423, 503
BsuRI GGCC 1 cut(s) 743
BtsCI GGATG 1 cut(s) 260
BtsI GCAGTG 2 cut(s) 744, 823
BtsIMutI CAGTG 3 cut(s) 341, 744, 823
Cac8I GCNNGC 4 cut(s) 28, 172, 176, 724
CciI TCATGA 1 cut(s) 522
CsiI ACCWGGT 1 cut(s) 352
CviAII CATG 3 cut(s) 242, 490, 523
CviJI RGCY 6 cut(s) 33, 415, 427, 458, 617, 743
CviKI_1 RGCY 6 cut(s) 33, 415, 427, 458, 617, 743
DdeI CTNAG 2 cut(s) 361, 738
DraI TTTAAA 1 cut(s) 672
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco57I CTGAAG 2 cut(s) 395, 648
EcoRII CCWGG 2 cut(s) 282, 352
EcoT22I ATGCAT 1 cut(s) 146
FaeI CATG 3 cut(s) 245, 493, 526
FaqI GGGAC 1 cut(s) 57
FatI CATG 3 cut(s) 241, 489, 522
FauNDI CATATG 2 cut(s) 556, 685
Fnu4HI GCNGC 3 cut(s) 31, 600, 618
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 3 cut(s) 31, 600, 618
FspBI CTAG 2 cut(s) 171, 614
GluI GCNGC 3 cut(s) 31, 600, 618
HaeIII GGCC 1 cut(s) 743
Hin1II CATG 3 cut(s) 245, 493, 526
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 4 cut(s) 59, 64, 287, 526
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 4 cut(s) 55, 184, 546, 595
Hpy188III TCNNGA 3 cut(s) 110, 523, 581
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 2 cut(s) 438, 746
HpyCH4III ACNGT 3 cut(s) 336, 387, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 689
HpyF3I CTNAG 2 cut(s) 361, 738
Hsp92II CATG 3 cut(s) 245, 493, 526
LguI GCTCTTC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 269, 276, 296, 339, 366, 452, 651, 789
Lsp1109I GCAGC 2 cut(s) 42, 611
LweI GCATC 2 cut(s) 586, 679
MabI ACCWGGT 1 cut(s) 352
MaeI CTAG 2 cut(s) 171, 614
MaeIII GTNAC 3 cut(s) 134, 330, 730
MboII GAAGA 5 cut(s) 27, 183, 401, 482, 485
MhlI GDGCHC 3 cut(s) 319, 724, 771
MluCI AATT 4 cut(s) 226, 295, 575, 759
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 1 cut(s) 695
MnlI CCTC 6 cut(s) 49, 92, 205, 577, 637, 733
Mph1103I ATGCAT 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 4 cut(s) 200, 402, 513, 671
MslI CAYNNNNRTG 2 cut(s) 246, 488
MspR9I CCNGG 2 cut(s) 284, 354
MssI GTTTAAAC 1 cut(s) 672
Mva1269I GAATGC 2 cut(s) 28, 699
MvaI CCWGG 2 cut(s) 284, 354
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 1 cut(s) 689
NdeI CATATG 2 cut(s) 556, 685
NheI GCTAGC 1 cut(s) 170
NlaIII CATG 3 cut(s) 245, 493, 526
NmeAIII GCCGAG 1 cut(s) 790
NsiI ATGCAT 1 cut(s) 146
NspV TTCGAA 1 cut(s) 62
PagI TCATGA 1 cut(s) 522
PciSI GCTCTTC 1 cut(s) 40
PctI GAATGC 2 cut(s) 28, 699
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 3 cut(s) 59, 64, 287
PkrI GCNGC 3 cut(s) 32, 601, 619
PleI GAGTC 1 cut(s) 534
PmeI GTTTAAAC 1 cut(s) 672
PpsI GAGTC 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 282, 352
PspGI CCWGG 2 cut(s) 282, 352
PstI CTGCAG 1 cut(s) 751
RseI CAYNNNNRTG 2 cut(s) 246, 488
SapI GCTCTTC 1 cut(s) 40
SaqAI TTAA 4 cut(s) 200, 402, 513, 671
SatI GCNGC 3 cut(s) 31, 600, 618
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 2 cut(s) 284, 354
SduI GDGCHC 3 cut(s) 319, 724, 771
SetI ASST 8 cut(s) 35, 332, 358, 460, 648, 670, 715, 778
SexAI ACCWGGT 1 cut(s) 352
SfaNI GCATC 2 cut(s) 586, 679
SfcI CTRYAG 1 cut(s) 747
SfuI TTCGAA 1 cut(s) 62
SmiMI CAYNNNNRTG 2 cut(s) 246, 488
Sse9I AATT 4 cut(s) 226, 295, 575, 759
SsiI CCGC 2 cut(s) 618, 726
SspMI CTAG 2 cut(s) 171, 614
StyD4I CCNGG 2 cut(s) 282, 352
TaaI ACNGT 3 cut(s) 336, 387, 422
TaqI TCGA 3 cut(s) 62, 97, 233
TaqII GACCGA 1 cut(s) 645
TasI AATT 4 cut(s) 226, 295, 575, 759
TauI GCSGC 1 cut(s) 620
TfiI GAWTC 3 cut(s) 59, 64, 287
Tru1I TTAA 4 cut(s) 200, 402, 513, 671
Tru9I TTAA 4 cut(s) 200, 402, 513, 671
TscAI CASTG 3 cut(s) 341, 751, 823
TseI GCWGC 2 cut(s) 30, 599
TspDTI ATGAA 1 cut(s) 573
TspRI CASTG 3 cut(s) 341, 751, 823
XapI RAATTY 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 2 cut(s) 171, 614
Zsp2I ATGCAT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.