Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0008784

Physical Location & Seq

Genomic Coordinates Reverse (-)

29248281 .. 29251054

Gene Structure 2774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1207100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAACATCAGAGAAGACAGAGACTCCCTTCTCAGAAGGAATTGGAAGGAGCAAGCAAAAATGGAGAAGCGAGGATTGAATGCCGACAGAATCAAGAGCTCTTCTTCTTGTTCGGAGGAGGACCCAAATCCTTGTCCCATCTGCCTCGGACCCATAATTCAAGATTCTTACCTCGAAAAGTGTCTCCATAAGTTCTGTTACAAGTGCATTTTGCGTTGGACGGAAGTTGTTGCTCGCAAGCAGTCTTGCCCGCCGGATTATATAAAGTGTCCTCTTTGCAAGACGGAAAATGTTTGTATAATATATGATTACGATGGATGTTCTTTTCAAAAGCATTGCATTGATCAGGATTCAGGCTTTATCTTATCGAAGGATCACAAGTATAGATTGCAATGTTATTACACTGAACCAGGTTTCTTAAATGACATATTTGACGTATCACGCTATTGGAAGTCCCGCAAGTATCTCCAGCCAAATCGCTGGTTCCAAAGTTGGTTGAGAAGGGAAATCCAAGCTCTCATGCAGGAGGAAGATGTTGACATCGTCATGCACCATATACATGGCGTGATTAAGTCATCCCTGACGAGGGATGAGCAGAAAGGTCGAACGACAGCACCTGAAGAAAAACAAAGAGAATTTCAAGAATCAACCTCTGATGCAGCAGGGCCTTTCCTGGTAGCAAAAACCAATCGCTTTGTAAACGAGGTGGAACTATTTCTTGCTTCGGGTTTGAACATTGAAGCATACGATGCTGTGTGCATGCAACGCTTAGGTTGGAGTGCTCCGGGAGTAACTACGGAGCCAGCAGAGGGAGAACTCGCCGAACATAGACCTGTGATTCCTTACTTGAACATATTTTATGACTCCGACTGCAGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

294

Amino Acids

34.17

Weight (kDa)

5.75

Isoelectric Point (pI)

74.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4	PF00097	45 - 93	1.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	45 - 84	1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05250 AT3G05250 AT3G05250
fragaria_vesca	FvH4_6g05630
malus_domestica	MD04G1207100.v1.1 MD12G1221000.v1.1 MD12G1221200.v1.1
prunus_persica	Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1
pyrus_communis	pycom04g18310
rosa_chinensis	RchiOBHm_Chr3g0454381
rosa_laevigata	RLG00000025446 RLG00000025448
rosa_multiflora	Rmu_sc0000006.1_g000002 Rmu_sc0000006.1_g000019 Rmu_sc0007209.1_g000011
rosa_roxburghii	Rroxscaffold_6G00425150
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058600 Rh3BG060500
rosa_wichuraiana	Rw3G004530 Rw3G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	251, 457
AclWI	GGATC	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	639
AfiI	CCNNNNNNNGG	3 cut(s)	585, 586, 809
AgsI	TTSAA	7 cut(s)	79, 161, 329, 641, 733, 740, 850
AjnI	CCWGG	2 cut(s)	409, 672
AluBI	AGCT	2 cut(s)	99, 515
AluI	AGCT	2 cut(s)	99, 515
Alw21I	GWGCWC	2 cut(s)	101, 784
Alw26I	GTCTC	2 cut(s)	15, 188
AlwI	GGATC	1 cut(s)	381
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	1 cut(s)	665
ApeKI	GCWGC	2 cut(s)	659, 873
ApoI	RAATTY	1 cut(s)	635
Asp700I	GAANNNNTTC	1 cut(s)	714
AspS9I	GGNCC	3 cut(s)	121, 149, 665
AsuC2I	CCSGG	1 cut(s)	786
AvaII	GGWCC	2 cut(s)	121, 149
BanII	GRGCYC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	101, 784
BbvI	GCAGC	1 cut(s)	671
BccI	CCATC	2 cut(s)	146, 308
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	2 cut(s)	411, 674
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	786
BcoDI	GTCTC	2 cut(s)	15, 188
BfmI	CTRYAG	1 cut(s)	871
BisI	GCNGC	2 cut(s)	660, 874
BlsI	GCNGC	2 cut(s)	661, 875
Bme1390I	CCNGG	3 cut(s)	411, 674, 786
Bme18I	GGWCC	2 cut(s)	121, 149
BmgT120I	GGNCC	3 cut(s)	121, 149, 665
BmiI	GGNNCC	4 cut(s)	123, 151, 485, 801
BmrFI	CCNGG	3 cut(s)	411, 674, 786
BmsI	GCATC	2 cut(s)	646, 739
BpiI	GAAGAC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	452
Bpu10I	CCTNAGC	1 cut(s)	769
BpuMI	CCSGG	1 cut(s)	786
BsaJI	CCNNGG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	3 cut(s)	585, 586, 809
Bse3DI	GCAATG	2 cut(s)	334, 398
BseBI	CCWGG	2 cut(s)	411, 674
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	3 cut(s)	323, 575, 595
BseLI	CCNNNNNNNGG	3 cut(s)	585, 586, 809
BseMI	GCAATG	2 cut(s)	334, 398
BseMII	CTCAG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	671
BshFI	GGCC	1 cut(s)	667
BsiHKAI	GWGCWC	2 cut(s)	101, 784
BsiSI	CCGG	2 cut(s)	254, 785
BslFI	GGGAC	2 cut(s)	120, 439
BslI	CCNNNNNNNGG	3 cut(s)	585, 586, 809
BsmAI	GTCTC	2 cut(s)	15, 188
BsmFI	GGGAC	2 cut(s)	120, 439
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	667
Bsp1286I	GDGCHC	2 cut(s)	101, 784
Bsp143I	GATC	2 cut(s)	343, 373
BspACI	CCGC	2 cut(s)	251, 457
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	123, 151, 485, 801
BspMAI	CTGCAG	1 cut(s)	875
BspPI	GGATC	1 cut(s)	381
BspQI	GCTCTTC	1 cut(s)	106
BsrDI	GCAATG	2 cut(s)	334, 398
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	343, 373
Bst2UI	CCWGG	2 cut(s)	411, 674
Bst6I	CTCTTC	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstC8I	GCNNGC	6 cut(s)	54, 235, 239, 251, 761, 804
BstDEI	CTNAG	2 cut(s)	32, 769
BstF5I	GGATG	3 cut(s)	323, 575, 595
BstKTI	GATC	2 cut(s)	346, 376
BstMAI	GTCTC	2 cut(s)	15, 188
BstMBI	GATC	2 cut(s)	343, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	749, 765
BstNI	CCWGG	2 cut(s)	411, 674
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	3 cut(s)	409, 672, 784
BstSFI	CTRYAG	1 cut(s)	871
BstV1I	GCAGC	1 cut(s)	671
BstV2I	GAAGAC	1 cut(s)	21
BstXI	CCANNNNNNTGG	2 cut(s)	480, 560
BsuRI	GGCC	1 cut(s)	667
BtsCI	GGATG	3 cut(s)	323, 575, 595
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	6 cut(s)	54, 235, 239, 251, 761, 804
CaiI	CAGNNNCTG	1 cut(s)	617
Cfr13I	GGNCC	3 cut(s)	121, 149, 665
CsiI	ACCWGGT	1 cut(s)	409
CviAII	CATG	4 cut(s)	520, 547, 560, 760
CviJI	RGCY	6 cut(s)	99, 357, 472, 515, 667, 802
CviKI_1	RGCY	6 cut(s)	99, 357, 472, 515, 667, 802
DdeI	CTNAG	2 cut(s)	32, 769
DpnI	GATC	2 cut(s)	345, 375
DpnII	GATC	2 cut(s)	343, 373
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	121, 149
Eco53kI	GAGCTC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	99
EcoO109I	RGGNCCY	2 cut(s)	121, 665
EcoRII	CCWGG	2 cut(s)	409, 672
EcoT38I	GRGCYC	1 cut(s)	101
FaeI	CATG	4 cut(s)	523, 550, 563, 763
FaqI	GGGAC	2 cut(s)	120, 439
FatI	CATG	4 cut(s)	519, 546, 559, 759
FauI	CCCGC	2 cut(s)	258, 464
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	660, 874
FokI	GGATG	3 cut(s)	330, 562, 602
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	660, 874
GluI	GCNGC	2 cut(s)	660, 874
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	667
HapII	CCGG	2 cut(s)	254, 785
Hin1II	CATG	4 cut(s)	523, 550, 563, 763
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	7 cut(s)	23, 90, 164, 350, 644, 838, 863
HpaII	CCGG	2 cut(s)	254, 785
Hpy166II	GTNNAC	2 cut(s)	538, 700
Hpy188I	TCNGA	6 cut(s)	11, 35, 115, 149, 655, 868
Hpy188III	TCNNGA	4 cut(s)	94, 161, 347, 641
Hpy8I	GTNNAC	2 cut(s)	538, 700
HpyAV	CCTTC	5 cut(s)	30, 38, 40, 364, 495
HpyCH4IV	ACGT	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	749, 765
HpyF3I	CTNAG	2 cut(s)	32, 769
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	4 cut(s)	523, 550, 563, 763
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	343, 373
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	3 cut(s)	49, 787, 799
Lsp1109I	GCAGC	1 cut(s)	671
LweI	GCATC	2 cut(s)	646, 739
MabI	ACCWGGT	1 cut(s)	409
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	197, 790
MalI	GATC	2 cut(s)	345, 375
MboI	GATC	2 cut(s)	343, 373
MboII	GAAGA	5 cut(s)	26, 93, 96, 542, 632
MhlI	GDGCHC	2 cut(s)	101, 784
MluCI	AATT	3 cut(s)	40, 156, 635
MlyI	GAGTC	2 cut(s)	17, 857
MmeI	TCCRAC	2 cut(s)	197, 755
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	2 cut(s)	419, 570
MslI	CAYNNNNRTG	2 cut(s)	545, 558
MspI	CCGG	2 cut(s)	254, 785
MspR9I	CCNGG	3 cut(s)	411, 674, 786
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	2 cut(s)	411, 674
MwoI	GCNNNNNNNGC	2 cut(s)	749, 765
NciI	CCSGG	1 cut(s)	786
NdeII	GATC	2 cut(s)	343, 373
NlaIII	CATG	4 cut(s)	523, 550, 563, 763
NlaIV	GGNNCC	4 cut(s)	123, 151, 485, 801
NspI	RCATGY	1 cut(s)	763
PaeI	GCATGC	1 cut(s)	763
PciSI	GCTCTTC	1 cut(s)	106
PctI	GAATGC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	5 cut(s)	90, 164, 350, 644, 838
PflFI	GACNNNGTC	1 cut(s)	542
PfoI	TCCNGGA	1 cut(s)	784
PkrI	GCNGC	2 cut(s)	661, 875
PleI	GAGTC	2 cut(s)	17, 857
PpsI	GAGTC	2 cut(s)	17, 857
PpuMI	RGGWCCY	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	409, 672
PspGI	CCWGG	2 cut(s)	409, 672
PspN4I	GGNNCC	4 cut(s)	123, 151, 485, 801
PspPI	GGNCC	3 cut(s)	121, 149, 665
PspPPI	RGGWCCY	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	875
PstNI	CAGNNNCTG	1 cut(s)	617
PsyI	GACNNNGTC	1 cut(s)	542
RseI	CAYNNNNRTG	2 cut(s)	545, 558
SacI	GAGCTC	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	419, 570
SatI	GCNGC	2 cut(s)	660, 874
Sau3AI	GATC	2 cut(s)	343, 373
Sau96I	GGNCC	3 cut(s)	121, 149, 665
SchI	GAGTC	2 cut(s)	17, 857
ScrFI	CCNGG	3 cut(s)	411, 674, 786
SduI	GDGCHC	2 cut(s)	101, 784
SexAI	ACCWGGT	1 cut(s)	409
SfaNI	GCATC	2 cut(s)	646, 739
SfcI	CTRYAG	1 cut(s)	871
SinI	GGWCC	2 cut(s)	121, 149
SmiMI	CAYNNNNRTG	2 cut(s)	545, 558
SphI	GCATGC	1 cut(s)	763
Sse9I	AATT	3 cut(s)	40, 156, 635
SsiI	CCGC	2 cut(s)	251, 457
SstI	GAGCTC	1 cut(s)	101
StyD4I	CCNGG	3 cut(s)	409, 672, 784
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	3 cut(s)	174, 368, 604
TasI	AATT	3 cut(s)	40, 156, 635
TfiI	GAWTC	5 cut(s)	90, 164, 350, 644, 838
Tru1I	TTAA	2 cut(s)	419, 570
Tru9I	TTAA	2 cut(s)	419, 570
TscAI	CASTG	1 cut(s)	409
TseI	GCWGC	2 cut(s)	659, 873
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	236, 299, 812
TspRI	CASTG	1 cut(s)	409
Tth111I	GACNNNGTC	1 cut(s)	542
VpaK11BI	GGWCC	2 cut(s)	121, 149
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.