Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000006.1

Orthogroup ID

OG0008784

Physical Location & Seq

Genomic Coordinates Reverse (-)

69550 .. 75688

Gene Structure 6139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000006.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

atgttggatcaatgtcgtcctctagatctcttggttaggaactatggagataaagatagtgtctatgatgtgaatcttgttataagagtggtaatggcttatgtttctattgtttcaaaaagtcccacaccaaaaatgtttgctgttggaaggttggtggatgggtatcttacactggttgcaagggatgagaaccttaagatgaatattttccagtcacttgtagaagcattgcctagagatgctcgtttttgcggcggcaatctctatagagccattgacatgtacctcaaggcacaccctagcttaacagaagaagaaagaatgactctgtgtggatccttggaatatcacagactgtccgaagaagctcgtgagcatgtaaaaaagaatgatcggttgcccgtgaagattacagcacggtttattcttcttgaacaagtgaatatgatgaggtcgatgacagctattggatctaattaccgaagaacaaagactcaggcggttgtgagagtcaacaaaggtttaggtaagggatggatgaattcccagaaggaactaaacttgatgacaaaagagaggaataaaaacttgtccgtgctggaaaagcagaacatggcgcaggggcaagagttgaatgtgtgcagctcttctgcttctccatcatcagaggattcgaatccttgtcccatctgcctcgcacccatctttcgactttcttatcttgacaaatgtttccataaattctgttacaaatgcatattacaatggaccagagttgttgctagcaaacagtctgacccgtcttcctccgtaaaatgtcctttgtgcaagacagataatttttcgattatacatggatatgatggatgttcgtttcaaaagcactacatcaaccaggattcagggaattgctttgtcttatcaagtgctcacaagtataggttacagtgctattatactgaaccaggtttcttagatgacatttttgatgcatcacggtattggaagtcctttaagtatcttcagccaaactgttggcttcaaaattggttgagaagggaaatccaagctcttatgcaggaagaagatgttgacatcatcatgcaccacatatttggcgttattaaatctctcatgagtcataagcaaaaatgtcagacgataacatatgaagtaaaacaaagagaatttcaagaggcaatctccgatgcagcaaggcctttcctagccgcaagaactgaccgatttgtgaatgaggtggaactatttcttgcttcaggtttaaacattgaagcatatgatgctgtgtgcattcagcgtttaggttggagtgctcgcggagtaactactgaggccactgcagaaggagaaattgccgagcacagacctgttatcccttacttgcataattttgatgactttgacagcagtgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

479

Amino Acids

55.03

Weight (kDa)

8.04

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05250 AT3G05250 AT3G05250
fragaria_vesca	FvH4_6g05630
malus_domestica	MD04G1207100.v1.1 MD12G1221000.v1.1 MD12G1221200.v1.1
prunus_persica	Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1
pyrus_communis	pycom04g18310
rosa_chinensis	RchiOBHm_Chr3g0454381
rosa_laevigata	RLG00000025446 RLG00000025448
rosa_multiflora	Rmu_sc0000006.1_g000002 Rmu_sc0000006.1_g000019 Rmu_sc0007209.1_g000011
rosa_roxburghii	Rroxscaffold_6G00425150
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058600 Rh3BG060500
rosa_wichuraiana	Rw3G004530 Rw3G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AccII	CGCG	1 cut(s)	1341
AciI	CCGC	5 cut(s)	255, 258, 503, 1233, 1341
AclWI	GGATC	4 cut(s)	15, 333, 346, 481
AcsI	RAATTY	3 cut(s)	544, 743, 1190
AcuI	CTGAAG	2 cut(s)	1010, 1263
AfaI	GTAC	1 cut(s)	287
AflII	CTTAAG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	7 cut(s)	117, 437, 637, 881, 1046, 1196, 1295
AjnI	CCWGG	2 cut(s)	897, 967
AluBI	AGCT	5 cut(s)	306, 371, 467, 648, 1073
AluI	AGCT	5 cut(s)	306, 371, 467, 648, 1073
Alw21I	GWGCWC	3 cut(s)	934, 1339, 1386
AlwI	GGATC	4 cut(s)	15, 333, 346, 481
AoxI	GGCC	2 cut(s)	1220, 1356
ApeKI	GCWGC	2 cut(s)	645, 1214
ApoI	RAATTY	3 cut(s)	544, 743, 1190
Asp700I	GAANNNNTTC	2 cut(s)	209, 1269
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	1 cut(s)	771
AsuII	TTCGAA	1 cut(s)	677
AsuNHI	GCTAGC	1 cut(s)	785
AvaII	GGWCC	1 cut(s)	771
BamHI	GGATCC	1 cut(s)	338
BauI	CACGAG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	3 cut(s)	934, 1339, 1386
BbvI	GCAGC	2 cut(s)	657, 1226
BccI	CCATC	6 cut(s)	155, 531, 670, 698, 713, 860
BciT130I	CCWGG	2 cut(s)	899, 969
BfaI	CTAG	5 cut(s)	23, 237, 303, 786, 1229
BfmI	CTRYAG	2 cut(s)	268, 1362
BfrI	CTTAAG	1 cut(s)	197
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	5 cut(s)	256, 259, 646, 1215, 1233
BlsI	GCNGC	5 cut(s)	257, 260, 647, 1216, 1234
Bme1390I	CCNGG	2 cut(s)	899, 969
Bme18I	GGWCC	1 cut(s)	771
BmgT120I	GGNCC	1 cut(s)	771
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	2 cut(s)	899, 969
BmsI	GCATC	5 cut(s)	232, 982, 1004, 1201, 1294
BmtI	GCTAGC	1 cut(s)	789
BpiI	GAAGAC	1 cut(s)	798
BplI	GAGNNNNNCTC	2 cut(s)	1190, 1222
Bpu14I	TTCGAA	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	275
BsaBI	GATNNNNATC	3 cut(s)	72, 165, 678
BsaJI	CCNNGG	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	180, 214
Bse3DI	GCAATG	1 cut(s)	230
Bse8I	GATNNNNATC	3 cut(s)	72, 165, 678
BseBI	CCWGG	2 cut(s)	899, 969
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	5 cut(s)	166, 193, 542, 546, 875
BseJI	GATNNNNATC	3 cut(s)	72, 165, 678
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	512, 1344
BseNI	ACTGG	2 cut(s)	180, 214
BseXI	GCAGC	2 cut(s)	657, 1226
BsgI	GTGCAG	1 cut(s)	664
Bsh1236I	CGCG	1 cut(s)	1341
BshFI	GGCC	2 cut(s)	1222, 1358
BsiHKAI	GWGCWC	3 cut(s)	934, 1339, 1386
BslFI	GGGAC	2 cut(s)	108, 672
BsmFI	GGGAC	2 cut(s)	108, 672
BsmI	GAATGC	1 cut(s)	1314
BsnI	GGCC	2 cut(s)	1222, 1358
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	3 cut(s)	934, 1339, 1386
Bsp143I	GATC	5 cut(s)	7, 25, 338, 394, 473
BspACI	CCGC	5 cut(s)	255, 258, 503, 1233, 1341
BspANI	GGCC	2 cut(s)	1222, 1358
BspCNI	CTCAG	2 cut(s)	511, 1345
BspFNI	CGCG	1 cut(s)	1341
BspHI	TCATGA	1 cut(s)	1137
BspLI	GGNNCC	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	1366
BspOI	GCTAGC	1 cut(s)	789
BspPI	GGATC	4 cut(s)	15, 333, 346, 481
BspQI	GCTCTTC	1 cut(s)	655
BspT104I	TTCGAA	1 cut(s)	677
BspTI	CTTAAG	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	180, 214
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	5 cut(s)	7, 25, 338, 394, 473
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	899, 969
Bst4CI	ACNGT	6 cut(s)	360, 423, 795, 951, 1002, 1037
Bst6I	CTCTTC	1 cut(s)	655
BstAFI	CTTAAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	1304
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	787, 1339
BstDEI	CTNAG	3 cut(s)	498, 976, 1353
BstF5I	GGATG	5 cut(s)	166, 193, 542, 546, 875
BstFNI	CGCG	1 cut(s)	1341
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	5 cut(s)	10, 28, 341, 397, 476
BstMBI	GATC	5 cut(s)	7, 25, 338, 394, 473
BstMWI	GCNNNNNNNGC	2 cut(s)	607, 1304
BstNI	CCWGG	2 cut(s)	899, 969
BstNSI	RCATGY	2 cut(s)	286, 383
BstSCI	CCNGG	2 cut(s)	897, 967
BstSFI	CTRYAG	2 cut(s)	268, 1362
BstUI	CGCG	1 cut(s)	1341
BstV1I	GCAGC	2 cut(s)	657, 1226
BstV2I	GAAGAC	1 cut(s)	798
BstX2I	RGATCY	3 cut(s)	25, 338, 473
BstXI	CCANNNNNNTGG	2 cut(s)	1038, 1118
BstYI	RGATCY	3 cut(s)	25, 338, 473
BsuRI	GGCC	2 cut(s)	1222, 1358
BtsCI	GGATG	5 cut(s)	166, 193, 542, 546, 875
BtsI	GCAGTG	2 cut(s)	1359, 1438
BtsIMutI	CAGTG	4 cut(s)	173, 956, 1359, 1438
Cac8I	GCNNGC	2 cut(s)	787, 1339
CciI	TCATGA	1 cut(s)	1137
CfoI	GCGC	1 cut(s)	622
Cfr13I	GGNCC	1 cut(s)	771
CsiI	ACCWGGT	1 cut(s)	967
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	6 cut(s)	283, 380, 616, 857, 1105, 1138
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	498, 976, 1353
DpnI	GATC	5 cut(s)	9, 27, 340, 396, 475
DpnII	GATC	5 cut(s)	7, 25, 338, 394, 473
DraI	TTTAAA	1 cut(s)	1287
Eam1104I	CTCTTC	1 cut(s)	655
EarI	CTCTTC	1 cut(s)	655
Eco130I	CCWWGG	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	1222
Eco47I	GGWCC	1 cut(s)	771
Eco57I	CTGAAG	2 cut(s)	1010, 1263
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	897, 967
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	2 cut(s)	761, 997
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	6 cut(s)	286, 383, 619, 860, 1108, 1141
FaqI	GGGAC	2 cut(s)	108, 672
FatI	CATG	6 cut(s)	282, 379, 615, 856, 1104, 1137
FauNDI	CATATG	2 cut(s)	1171, 1300
Fnu4HI	GCNGC	5 cut(s)	256, 259, 646, 1215, 1233
FokI	GGATG	5 cut(s)	173, 200, 549, 553, 882
Fsp4HI	GCNGC	5 cut(s)	256, 259, 646, 1215, 1233
FspBI	CTAG	5 cut(s)	23, 237, 303, 786, 1229
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	5 cut(s)	256, 259, 646, 1215, 1233
HaeIII	GGCC	2 cut(s)	1222, 1358
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	6 cut(s)	286, 383, 619, 860, 1108, 1141
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HincII	GTYRAC	2 cut(s)	517, 1096
HindII	GTYRAC	2 cut(s)	517, 1096
HinfI	GANTC	8 cut(s)	73, 328, 496, 513, 674, 679, 902, 1141
Hpy166II	GTNNAC	2 cut(s)	517, 1096
Hpy188I	TCNGA	5 cut(s)	364, 670, 799, 1161, 1210
Hpy188III	TCNNGA	6 cut(s)	23, 374, 434, 725, 1138, 1196
Hpy8I	GTNNAC	2 cut(s)	517, 1096
HpyAV	CCTTC	4 cut(s)	144, 547, 1053, 1361
HpyCH4III	ACNGT	6 cut(s)	360, 423, 795, 951, 1002, 1037
HpyF10VI	GCNNNNNNNGC	2 cut(s)	607, 1304
HpyF3I	CTNAG	3 cut(s)	498, 976, 1353
Hsp92II	CATG	6 cut(s)	286, 383, 619, 860, 1108, 1141
HspAI	GCGC	1 cut(s)	620
Kzo9I	GATC	5 cut(s)	7, 25, 338, 394, 473
LguI	GCTCTTC	1 cut(s)	655
Lsp1109I	GCAGC	2 cut(s)	657, 1226
LweI	GCATC	5 cut(s)	232, 982, 1004, 1201, 1294
MabI	ACCWGGT	1 cut(s)	967
MaeI	CTAG	5 cut(s)	23, 237, 303, 786, 1229
MaeIII	GTNAC	4 cut(s)	216, 749, 945, 1345
MalI	GATC	5 cut(s)	9, 27, 340, 396, 475
MboI	GATC	5 cut(s)	7, 25, 338, 394, 473
MflI	RGATCY	3 cut(s)	25, 338, 473
MhlI	GDGCHC	3 cut(s)	934, 1339, 1386
MluCI	AATT	9 cut(s)	478, 544, 743, 841, 910, 1048, 1190, 1374, 1411
MlyI	GAGTC	4 cut(s)	322, 490, 522, 1150
MmeI	TCCRAC	2 cut(s)	127, 1310
Mph1103I	ATGCAT	2 cut(s)	761, 997
MroXI	GAANNNNTTC	2 cut(s)	209, 1269
MseI	TTAA	5 cut(s)	198, 308, 1017, 1128, 1286
MslI	CAYNNNNRTG	3 cut(s)	281, 861, 1103
MspCI	CTTAAG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	899, 969
MssI	GTTTAAAC	1 cut(s)	1287
Mva1269I	GAATGC	1 cut(s)	1314
MvaI	CCWGG	2 cut(s)	899, 969
MvnI	CGCG	1 cut(s)	1341
MwoI	GCNNNNNNNGC	2 cut(s)	607, 1304
NdeI	CATATG	2 cut(s)	1171, 1300
NdeII	GATC	5 cut(s)	7, 25, 338, 394, 473
NheI	GCTAGC	1 cut(s)	785
NlaIII	CATG	6 cut(s)	286, 383, 619, 860, 1108, 1141
NlaIV	GGNNCC	1 cut(s)	340
NmeAIII	GCCGAG	1 cut(s)	1405
NmuCI	GTSAC	1 cut(s)	216
NsiI	ATGCAT	2 cut(s)	761, 997
NspI	RCATGY	2 cut(s)	286, 383
NspV	TTCGAA	1 cut(s)	677
PagI	TCATGA	1 cut(s)	1137
PceI	AGGCCT	1 cut(s)	1222
PciI	ACATGT	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	655
PctI	GAATGC	1 cut(s)	1314
PdmI	GAANNNNTTC	2 cut(s)	209, 1269
PfeI	GAWTC	4 cut(s)	73, 674, 679, 902
PkrI	GCNGC	5 cut(s)	257, 260, 647, 1216, 1234
PleI	GAGTC	4 cut(s)	322, 490, 521, 1149
PmeI	GTTTAAAC	1 cut(s)	1287
PpsI	GAGTC	4 cut(s)	322, 490, 521, 1149
PscI	ACATGT	1 cut(s)	282
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	897, 967
PspGI	CCWGG	2 cut(s)	897, 967
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	771
PstI	CTGCAG	1 cut(s)	1366
PsuI	RGATCY	3 cut(s)	25, 338, 473
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	3 cut(s)	281, 861, 1103
SapI	GCTCTTC	1 cut(s)	655
SaqAI	TTAA	5 cut(s)	198, 308, 1017, 1128, 1286
SatI	GCNGC	5 cut(s)	256, 259, 646, 1215, 1233
Sau3AI	GATC	5 cut(s)	7, 25, 338, 394, 473
Sau96I	GGNCC	1 cut(s)	771
SchI	GAGTC	4 cut(s)	322, 490, 522, 1150
ScrFI	CCNGG	2 cut(s)	899, 969
SduI	GDGCHC	3 cut(s)	934, 1339, 1386
SexAI	ACCWGGT	1 cut(s)	967
SfaNI	GCATC	5 cut(s)	232, 982, 1004, 1201, 1294
SfcI	CTRYAG	2 cut(s)	268, 1362
SfuI	TTCGAA	1 cut(s)	677
SinI	GGWCC	1 cut(s)	771
SmiMI	CAYNNNNRTG	3 cut(s)	281, 861, 1103
SmlI	CTYRAG	2 cut(s)	197, 290
SmoI	CTYRAG	2 cut(s)	197, 290
Sse9I	AATT	9 cut(s)	478, 544, 743, 841, 910, 1048, 1190, 1374, 1411
SseBI	AGGCCT	1 cut(s)	1222
SsiI	CCGC	5 cut(s)	255, 258, 503, 1233, 1341
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	5 cut(s)	23, 237, 303, 786, 1229
StuI	AGGCCT	1 cut(s)	1222
StyD4I	CCNGG	2 cut(s)	897, 967
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	6 cut(s)	360, 423, 795, 951, 1002, 1037
TaqI	TCGA	4 cut(s)	458, 677, 712, 848
TaqII	GACCGA	1 cut(s)	1260
TasI	AATT	9 cut(s)	478, 544, 743, 841, 910, 1048, 1190, 1374, 1411
TauI	GCSGC	3 cut(s)	258, 261, 1235
TfiI	GAWTC	4 cut(s)	73, 674, 679, 902
Tru1I	TTAA	5 cut(s)	198, 308, 1017, 1128, 1286
Tru9I	TTAA	5 cut(s)	198, 308, 1017, 1128, 1286
TscAI	CASTG	4 cut(s)	180, 956, 1366, 1438
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	2 cut(s)	645, 1214
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	3 cut(s)	218, 557, 1188
TspGWI	ACGGA	2 cut(s)	586, 802
TspRI	CASTG	4 cut(s)	180, 956, 1366, 1438
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	771
XapI	RAATTY	3 cut(s)	544, 743, 1190
XbaI	TCTAGA	1 cut(s)	22
XceI	RCATGY	2 cut(s)	286, 383
XmnI	GAANNNNTTC	2 cut(s)	209, 1269
XspI	CTAG	5 cut(s)	23, 237, 303, 786, 1229
Zsp2I	ATGCAT	2 cut(s)	761, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.