Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008784

Physical Location & Seq

Genomic Coordinates Reverse (-)

29751628 .. 29752698

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1221000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTATCTGCAGCTTTTTCTTATCAAAGGAGCACAAGCATAGATTGCAGTGTTATTACACTGAACCAGTCCAGCAAGTATCTTCAGCCAAACCGCTGGCTCCAAAGTTGGTGGAGAAGGGAAATCCAAGCTCTGATGCAGGAGGAAGATGTTGACATCGTCATGCACCACATACATGGCGTGATTAATTCATCCCTGACGAGGGATGAACAAAAAGGTCGAACGACGGCACCTGAAGAAAAACAAAGAGAATTTCAAGAATCAACCTGTGATGCAGCAGGGCCTTTCCTGGCAGCAAGAACCAATCGGTTTGTAAACGAGGTGGAACTATTTCTTGCTTCGGGTTTGAAAATTGAAGCATACGATGCTGTGTGCATGCAACGCTTAGGTTGGAGTGCTCCGGGAGTAACTACAAAGCCAGCAGAGGTGGAACTCGCCGAGCACAGACCTGTGATCCCTTATTTGTACATATTTTTTTATTACGACCGCAGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

166

Amino Acids

19.04

Weight (kDa)

5.42

Isoelectric Point (pI)

68.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05250 AT3G05250 AT3G05250
fragaria_vesca	FvH4_6g05630
malus_domestica	MD04G1207100.v1.1 MD12G1221000.v1.1 MD12G1221200.v1.1
prunus_persica	Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1
pyrus_communis	pycom04g18310
rosa_chinensis	RchiOBHm_Chr3g0454381
rosa_laevigata	RLG00000025446 RLG00000025448
rosa_multiflora	Rmu_sc0000006.1_g000002 Rmu_sc0000006.1_g000019 Rmu_sc0007209.1_g000011
rosa_roxburghii	Rroxscaffold_6G00425150
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058600 Rh3BG060500
rosa_wichuraiana	Rw3G004530 Rw3G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AciI	CCGC	2 cut(s)	94, 487
AclWI	GGATC	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	2 cut(s)	68, 255
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	201, 202
AgsI	TTSAA	3 cut(s)	257, 349, 356
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	2 cut(s)	14, 131
AluI	AGCT	2 cut(s)	14, 131
Alw21I	GWGCWC	3 cut(s)	35, 400, 444
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	4 cut(s)	11, 275, 293, 489
ApoI	RAATTY	1 cut(s)	251
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	229
Bbv12I	GWGCWC	3 cut(s)	35, 400, 444
BbvI	GCAGC	3 cut(s)	23, 287, 305
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	290
BcnI	CCSGG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	4 cut(s)	12, 276, 294, 490
BlsI	GCNGC	4 cut(s)	13, 277, 295, 491
Bme1390I	CCNGG	2 cut(s)	290, 402
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	101, 231
BmrFI	CCNGG	2 cut(s)	290, 402
BmsI	GCATC	3 cut(s)	126, 262, 355
Bpu10I	CCTNAGC	1 cut(s)	385
BpuMI	CCSGG	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 202
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	290
BseGI	GGATG	2 cut(s)	191, 211
BseLI	CCNNNNNNNGG	2 cut(s)	201, 202
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	3 cut(s)	23, 287, 305
Bsh1285I	CGRYCG	1 cut(s)	487
BshFI	GGCC	1 cut(s)	283
BshNI	GGYRCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	487
BsiHKAI	GWGCWC	3 cut(s)	35, 400, 444
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	201, 202
BsnI	GGCC	1 cut(s)	283
Bsp1286I	GDGCHC	3 cut(s)	35, 400, 444
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	1 cut(s)	453
BspACI	CCGC	2 cut(s)	94, 487
BspANI	GGCC	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	101, 231
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	448
BspT107I	GGYRCC	1 cut(s)	229
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	290
BstAPI	GCANNNNNTGC	2 cut(s)	45, 365
BstAUI	TGTACA	1 cut(s)	465
BstC8I	GCNNGC	3 cut(s)	98, 377, 420
BstDEI	CTNAG	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	191, 211
BstKTI	GATC	1 cut(s)	456
BstMBI	GATC	1 cut(s)	453
BstMCI	CGRYCG	1 cut(s)	487
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 365, 381
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	288, 400
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	23, 287, 305
BstXI	CCANNNNNNTGG	2 cut(s)	96, 176
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	191, 211
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 59
Cac8I	GCNNGC	3 cut(s)	98, 377, 420
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	466
CspCI	CAANNNNNGTGG	2 cut(s)	92, 127
CviAII	CATG	3 cut(s)	163, 176, 376
CviJI	RGCY	6 cut(s)	14, 88, 100, 131, 283, 418
CviKI_1	RGCY	6 cut(s)	14, 88, 100, 131, 283, 418
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	1 cut(s)	385
DpnI	GATC	1 cut(s)	455
DpnII	GATC	1 cut(s)	453
Eco57I	CTGAAG	2 cut(s)	68, 255
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	288
FaeI	CATG	3 cut(s)	166, 179, 379
FaiI	YATR	7 cut(s)	41, 164, 173, 177, 361, 377, 470
FatI	CATG	3 cut(s)	162, 175, 375
Fnu4HI	GCNGC	4 cut(s)	12, 276, 294, 490
FokI	GGATG	2 cut(s)	178, 218
Fsp4HI	GCNGC	4 cut(s)	12, 276, 294, 490
GluI	GCNGC	4 cut(s)	12, 276, 294, 490
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	3 cut(s)	166, 179, 379
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	401
Hpy166II	GTNNAC	2 cut(s)	154, 316
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	2 cut(s)	154, 316
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	111
HpyCH4V	TGCA	7 cut(s)	11, 48, 139, 166, 275, 375, 379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 365, 381
HpyF3I	CTNAG	1 cut(s)	385
Hsp92II	CATG	3 cut(s)	166, 179, 379
Kzo9I	GATC	1 cut(s)	453
LmnI	GCTCC	3 cut(s)	30, 105, 403
Lsp1109I	GCAGC	3 cut(s)	23, 287, 305
LweI	GCATC	3 cut(s)	126, 262, 355
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	1 cut(s)	455
MboI	GATC	1 cut(s)	453
MboII	GAAGA	3 cut(s)	74, 158, 248
MhlI	GDGCHC	3 cut(s)	35, 400, 444
MluCI	AATT	3 cut(s)	187, 251, 351
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	4 cut(s)	136, 195, 313, 418
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	2 cut(s)	161, 174
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	290, 402
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	45, 365, 381
NciI	CCSGG	1 cut(s)	402
NdeII	GATC	1 cut(s)	453
NlaIII	CATG	3 cut(s)	166, 179, 379
NlaIV	GGNNCC	2 cut(s)	101, 231
NmeAIII	GCCGAG	1 cut(s)	463
NspI	RCATGY	1 cut(s)	379
PaeI	GCATGC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	260
PflFI	GACNNNGTC	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	4 cut(s)	13, 277, 295, 491
PshBI	ATTAAT	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	101, 231
PspPI	GGNCC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	13
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	2 cut(s)	161, 174
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	12, 276, 294, 490
Sau3AI	GATC	1 cut(s)	453
Sau96I	GGNCC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	290, 402
SduI	GDGCHC	3 cut(s)	35, 400, 444
SetI	ASST	9 cut(s)	16, 133, 220, 235, 269, 324, 391, 429, 451
SfaNI	GCATC	3 cut(s)	126, 262, 355
SfcI	CTRYAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	2 cut(s)	161, 174
SphI	GCATGC	1 cut(s)	379
Sse9I	AATT	3 cut(s)	187, 251, 351
SsiI	CCGC	2 cut(s)	94, 487
StyD4I	CCNGG	2 cut(s)	288, 400
TaqI	TCGA	1 cut(s)	220
TasI	AATT	3 cut(s)	187, 251, 351
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	55, 66
TseI	GCWGC	4 cut(s)	11, 275, 293, 489
TspDTI	ATGAA	2 cut(s)	180, 222
TspRI	CASTG	2 cut(s)	55, 66
Tth111I	GACNNNGTC	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.