Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008784

Physical Location & Seq

Genomic Coordinates Reverse (-)

28739966 .. 28742585

Gene Structure 2620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G327800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGCAGCTGAATGTGAACAAGAACACGAGCTCTTCTTCTTCAGAGGACTCAAATCCTTGTCCCATTTGCCTCGGACCCATAATTCAAGATTCTTACCTTGACAAGTGTTTCCATAAGTTTTGTTACAATTGCATCTTACGTTGGACCAAAGTTGTTGCTCACAAGCAGTCTTGCCTGCCTACGTCTGTAAAGTGTCCTCTTTGCAAGACTGAAAATTTATCAATAATACATGGGTATGATGGAAGTTCTTTTCAAAAGCATTACATCAACCAGGATTCTGGCTTTATCTTATCAAAAGATCACAAGTATAGATTACAATGCTATTATACTGAACCAGGTTTCTTAAATGACATATTTGATGTCTTGCGGTATTGGAAGTCCCATAAGTATCTTCAGCCAAATCGCTGGCTCCAAAGTTGGTTGAGAAGGGAAATCCAAGCTCTGATGCAGGAGGAAGATGTTGATATCATTATGCACCACATACATGGGCTGATTCATTCATCCCTGACTAGAGTTTCAATAATCTTTGTGTCTGAACTTGCCTGCCTGAACCCTGCATTTTTTAGGCATGAACAAAAGGGTCAAACGAAAACACCTGAAGCCAAACAAAGAGAATTTCAAGAATCAATCTCTGATGCAGCAAGGCCTTTCCTAGCAGCAAGAACTGATCGGTTTGTAAATGAGGTGGAGCTATTTCTTGCTTCGGGTTTGAACATTGAAGCATACGATGCTGTGTGCATGCAACGCTTAGGTTGGAGTGCTCCAGGAGTAACTACGGAGCCTACAGAAGGAGAACTTGCCGAACACAGACCTGTGATCCCTTACTTGTATATTTTTTATGAATCCGACTGTAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

288

Amino Acids

33.2

Weight (kDa)

6.06

Isoelectric Point (pI)

71.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05250 AT3G05250 AT3G05250
fragaria_vesca	FvH4_6g05630
malus_domestica	MD04G1207100.v1.1 MD12G1221000.v1.1 MD12G1221200.v1.1
prunus_persica	Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1
pyrus_communis	pycom04g18310
rosa_chinensis	RchiOBHm_Chr3g0454381
rosa_laevigata	RLG00000025446 RLG00000025448
rosa_multiflora	Rmu_sc0000006.1_g000002 Rmu_sc0000006.1_g000019 Rmu_sc0007209.1_g000011
rosa_roxburghii	Rroxscaffold_6G00425150
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058600 Rh3BG060500
rosa_wichuraiana	Rw3G004530 Rw3G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	1 cut(s)	814
AcsI	RAATTY	2 cut(s)	217, 617
AcuI	CTGAAG	3 cut(s)	27, 380, 621
AfiI	CCNNNNNNNGG	1 cut(s)	791
AgsI	TTSAA	6 cut(s)	89, 257, 522, 623, 715, 722
AjnI	CCWGG	3 cut(s)	273, 337, 766
AluBI	AGCT	4 cut(s)	10, 33, 443, 694
AluI	AGCT	4 cut(s)	10, 33, 443, 694
Alw21I	GWGCWC	2 cut(s)	35, 766
AlwI	GGATC	1 cut(s)	814
AoxI	GGCC	1 cut(s)	647
ApeKI	GCWGC	3 cut(s)	7, 641, 659
ApoI	RAATTY	2 cut(s)	217, 617
AspS9I	GGNCC	2 cut(s)	77, 147
AvaII	GGWCC	2 cut(s)	77, 147
BanII	GRGCYC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	28
Bbv12I	GWGCWC	2 cut(s)	35, 766
BbvI	GCAGC	3 cut(s)	19, 653, 671
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	3 cut(s)	275, 339, 768
BfaI	CTAG	2 cut(s)	513, 656
BfmI	CTRYAG	2 cut(s)	786, 853
BisI	GCNGC	3 cut(s)	8, 642, 660
BlsI	GCNGC	3 cut(s)	9, 643, 661
Bme1390I	CCNGG	3 cut(s)	275, 339, 768
Bme18I	GGWCC	2 cut(s)	77, 147
BmgT120I	GGNCC	2 cut(s)	77, 147
BmiI	GGNNCC	3 cut(s)	79, 413, 783
BmrFI	CCNGG	3 cut(s)	275, 339, 768
BmsI	GCATC	4 cut(s)	144, 438, 628, 721
BpmI	CTGGAG	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	751
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	791
BseBI	CCWGG	3 cut(s)	275, 339, 768
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	1 cut(s)	791
BseXI	GCAGC	3 cut(s)	19, 653, 671
BshFI	GGCC	1 cut(s)	649
BsiHKAI	GWGCWC	2 cut(s)	35, 766
BslFI	GGGAC	2 cut(s)	48, 367
BslI	CCNNNNNNNGG	1 cut(s)	791
BsmFI	GGGAC	2 cut(s)	48, 367
BsnI	GGCC	1 cut(s)	649
Bsp1286I	GDGCHC	2 cut(s)	35, 766
Bsp143I	GATC	3 cut(s)	301, 670, 819
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	79, 413, 783
BspPI	GGATC	1 cut(s)	814
BspQI	GCTCTTC	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	3 cut(s)	301, 670, 819
BssSI	CACGAG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	28
Bst2UI	CCWGG	3 cut(s)	275, 339, 768
Bst4CI	ACNGT	1 cut(s)	854
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstC8I	GCNNGC	4 cut(s)	179, 410, 547, 743
BstDEI	CTNAG	1 cut(s)	751
BstENI	CCTNNNNNAGG	1 cut(s)	789
BstF5I	GGATG	1 cut(s)	503
BstKTI	GATC	3 cut(s)	304, 673, 822
BstMBI	GATC	3 cut(s)	301, 670, 819
BstMWI	GCNNNNNNNGC	2 cut(s)	731, 747
BstNI	CCWGG	3 cut(s)	275, 339, 768
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	3 cut(s)	273, 337, 766
BstSFI	CTRYAG	2 cut(s)	786, 853
BstV1I	GCAGC	3 cut(s)	19, 653, 671
BstXI	CCANNNNNNTGG	3 cut(s)	281, 408, 488
BsuRI	GGCC	1 cut(s)	649
BtsCI	GGATG	1 cut(s)	503
Cac8I	GCNNGC	4 cut(s)	179, 410, 547, 743
Cfr13I	GGNCC	2 cut(s)	77, 147
CsiI	ACCWGGT	1 cut(s)	337
CviAII	CATG	4 cut(s)	233, 488, 572, 742
DdeI	CTNAG	1 cut(s)	751
DpnI	GATC	3 cut(s)	303, 672, 821
DpnII	GATC	3 cut(s)	301, 670, 819
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	2 cut(s)	77, 147
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	3 cut(s)	27, 380, 621
EcoICRI	GAGCTC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	789
EcoRII	CCWGG	3 cut(s)	273, 337, 766
EcoRV	GATATC	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	4 cut(s)	236, 491, 575, 745
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FaqI	GGGAC	2 cut(s)	48, 367
FatI	CATG	4 cut(s)	232, 487, 571, 741
Fnu4HI	GCNGC	3 cut(s)	8, 642, 660
FokI	GGATG	1 cut(s)	490
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	3 cut(s)	8, 642, 660
FspBI	CTAG	2 cut(s)	513, 656
GluI	GCNGC	3 cut(s)	8, 642, 660
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	1 cut(s)	649
Hin1II	CATG	4 cut(s)	236, 491, 575, 745
HinfI	GANTC	6 cut(s)	50, 92, 278, 496, 626, 845
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	6 cut(s)	46, 77, 447, 538, 637, 850
Hpy188III	TCNNGA	2 cut(s)	89, 623
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	423, 785
HpyCH4III	ACNGT	1 cut(s)	854
HpyCH4IV	ACGT	2 cut(s)	142, 185
HpyCH4V	TGCA	8 cut(s)	135, 207, 451, 478, 560, 641, 741, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	731, 747
HpyF3I	CTNAG	1 cut(s)	751
HpySE526I	ACGT	2 cut(s)	142, 185
Hsp92II	CATG	4 cut(s)	236, 491, 575, 745
Kzo9I	GATC	3 cut(s)	301, 670, 819
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	5 cut(s)	4, 417, 691, 769, 781
Lsp1109I	GCAGC	3 cut(s)	19, 653, 671
LweI	GCATC	4 cut(s)	144, 438, 628, 721
MabI	ACCWGGT	1 cut(s)	337
MaeI	CTAG	2 cut(s)	513, 656
MaeII	ACGT	2 cut(s)	142, 185
MaeIII	GTNAC	2 cut(s)	125, 772
MalI	GATC	3 cut(s)	303, 672, 821
MboI	GATC	3 cut(s)	301, 670, 819
MboII	GAAGA	5 cut(s)	27, 30, 33, 386, 470
MfeI	CAATTG	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	35, 766
MluCI	AATT	4 cut(s)	84, 130, 217, 617
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	125, 737
MnlI	CCTC	5 cut(s)	40, 83, 210, 448, 679
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	2 cut(s)	237, 486
MspA1I	CMGCKG	1 cut(s)	10
MspR9I	CCNGG	3 cut(s)	275, 339, 768
MunI	CAATTG	1 cut(s)	130
MvaI	CCWGG	3 cut(s)	275, 339, 768
MwoI	GCNNNNNNNGC	2 cut(s)	731, 747
NdeII	GATC	3 cut(s)	301, 670, 819
NlaIII	CATG	4 cut(s)	236, 491, 575, 745
NlaIV	GGNNCC	3 cut(s)	79, 413, 783
NspI	RCATGY	1 cut(s)	745
PaeI	GCATGC	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	649
PciSI	GCTCTTC	1 cut(s)	40
PfeI	GAWTC	5 cut(s)	92, 278, 496, 626, 845
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	3 cut(s)	9, 643, 661
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	3 cut(s)	273, 337, 766
PspGI	CCWGG	3 cut(s)	273, 337, 766
PspN4I	GGNNCC	3 cut(s)	79, 413, 783
PspPI	GGNCC	2 cut(s)	77, 147
PvuII	CAGCTG	1 cut(s)	10
RseI	CAYNNNNRTG	2 cut(s)	237, 486
SacI	GAGCTC	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	3 cut(s)	8, 642, 660
Sau3AI	GATC	3 cut(s)	301, 670, 819
Sau96I	GGNCC	2 cut(s)	77, 147
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	3 cut(s)	275, 339, 768
SduI	GDGCHC	2 cut(s)	35, 766
SexAI	ACCWGGT	1 cut(s)	337
SfaNI	GCATC	4 cut(s)	144, 438, 628, 721
SfcI	CTRYAG	2 cut(s)	786, 853
SinI	GGWCC	2 cut(s)	77, 147
SmiMI	CAYNNNNRTG	2 cut(s)	237, 486
SphI	GCATGC	1 cut(s)	745
Sse9I	AATT	4 cut(s)	84, 130, 217, 617
SseBI	AGGCCT	1 cut(s)	649
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	2 cut(s)	513, 656
SstI	GAGCTC	1 cut(s)	35
StuI	AGGCCT	1 cut(s)	649
StyD4I	CCNGG	3 cut(s)	273, 337, 766
TaaI	ACNGT	1 cut(s)	854
TaiI	ACGT	2 cut(s)	145, 188
TasI	AATT	4 cut(s)	84, 130, 217, 617
TfiI	GAWTC	5 cut(s)	92, 278, 496, 626, 845
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TseI	GCWGC	3 cut(s)	7, 641, 659
TspDTI	ATGAA	4 cut(s)	488, 492, 588, 858
TspGWI	ACGGA	1 cut(s)	794
VpaK11BI	GGWCC	2 cut(s)	77, 147
XagI	CCTNNNNNAGG	1 cut(s)	789
XapI	RAATTY	2 cut(s)	217, 617
XceI	RCATGY	1 cut(s)	745
XspI	CTAG	2 cut(s)	513, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.