Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007209.1

Orthogroup ID

OG0008784

Physical Location & Seq

Genomic Coordinates Reverse (-)

58697 .. 63662

Gene Structure 4966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007209.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

atgttggatcaatgtcgtcctctagatctcttggttaggaactatggagataaagatagtgtctatgatgtgaatcttgttataagagtggtaatggcttatgtttctattgtttcaaaaagtcccacaccaaaaatgtttgctgttggaaggttggtggatgggtatcttacactggttgcaagggatgagaaccttaagatgaatattttccagtcacttgtagaagcattgcctagagatgctcgtttttgcggcggcaatctctatagagccattgacatgtacctcaaggcacaccctagcttaacagaagaagaaagaatgactctgtgtggatccttggaatatcacagactgtccgaagaagctcgtgagcatgtaaaaaagaatgatcggttgcccgtgaagattacagcacggtttattcttcttgaacaagtgaatatgatgaggtcgatgacagctattggatctaattaccgaagaacaaagactcaggcggttgtgagagtcaacaaaggtttaggtaagggatggatgaattcccagaaggaactaaacttgatgacaaaagagaggaataaaaacttgtccgtgctggaaaagcagaacatggcgcaggggcaagagttgaatgcgtgcagctcttctgcttctccatcatcagaggattcgaatccttgtcccatctgcctcgcacccatctttcgactttcttatcttgacaaatgtttccataagttctgttacaaatgcatattacaatggactaaagttgttgctagcaagcagtctgacccgtcttcctcctttaagtgtcctttgtgcaagacagataatttttcgattatacatggatatgatggatgttcgtttcaaaagcattacatcaaccaggattcaggggattgctttgtcttatcaagcgctcacaagtataggttacagtgctattatactgaaccaggtttcttagatgacatctttgatgtatcacggtattggaaatcctttaagtatcttcagccaaactgttggcttcaaagttggctgagacgggaaatccaagctcttatacaggaagaagatgttgacatcatcatgcaccacatacttggcgtgattaaatccctaatgagtcataagcaaaaaggtcagacgaaatcatctgaagcaaaacagagagaatttcaagagacagtctccgatgcagcaaggcctttcttagccacaagaactgaccgatttgtaaatgaggtggaactatttcttgcttcaggtttaaacattgaagcatacgatgctgtgtgcatgcagcgcttaggttggagtgctcacggagtaacttcagaggctgctgcagaaggagaacttgccgagcatagacctgttatcccttacttgcatatttttgatgactttgacagcagtgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

479

Amino Acids

54.82

Weight (kDa)

7.82

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05250 AT3G05250 AT3G05250
fragaria_vesca	FvH4_6g05630
malus_domestica	MD04G1207100.v1.1 MD12G1221000.v1.1 MD12G1221200.v1.1
prunus_persica	Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1
pyrus_communis	pycom04g18310
rosa_chinensis	RchiOBHm_Chr3g0454381
rosa_laevigata	RLG00000025446 RLG00000025448
rosa_multiflora	Rmu_sc0000006.1_g000002 Rmu_sc0000006.1_g000019 Rmu_sc0007209.1_g000011
rosa_roxburghii	Rroxscaffold_6G00425150
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058600 Rh3BG060500
rosa_wichuraiana	Rw3G004530 Rw3G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AciI	CCGC	3 cut(s)	255, 258, 503
AclWI	GGATC	4 cut(s)	15, 333, 346, 481
AcsI	RAATTY	2 cut(s)	544, 1190
AcuI	CTGAAG	4 cut(s)	1010, 1194, 1263, 1335
AfaI	GTAC	1 cut(s)	287
AfeI	AGCGCT	2 cut(s)	931, 1322
AflII	CTTAAG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	7 cut(s)	117, 437, 637, 881, 1046, 1196, 1295
AjnI	CCWGG	2 cut(s)	897, 967
AluBI	AGCT	5 cut(s)	306, 371, 467, 648, 1073
AluI	AGCT	5 cut(s)	306, 371, 467, 648, 1073
Alw21I	GWGCWC	1 cut(s)	1339
Alw26I	GTCTC	3 cut(s)	1051, 1193, 1210
AlwI	GGATC	4 cut(s)	15, 333, 346, 481
AlwNI	CAGNNNCTG	1 cut(s)	1358
Aor51HI	AGCGCT	2 cut(s)	931, 1322
AoxI	GGCC	1 cut(s)	1220
ApeKI	GCWGC	5 cut(s)	645, 1214, 1318, 1358, 1361
ApoI	RAATTY	2 cut(s)	544, 1190
Asp700I	GAANNNNTTC	2 cut(s)	209, 1269
AspLEI	GCGC	3 cut(s)	622, 932, 1323
AsuII	TTCGAA	1 cut(s)	677
AsuNHI	GCTAGC	1 cut(s)	785
BamHI	GGATCC	1 cut(s)	338
BauI	CACGAG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	1 cut(s)	1339
BbvI	GCAGC	5 cut(s)	657, 1226, 1330, 1345, 1348
BccI	CCATC	6 cut(s)	155, 531, 670, 698, 713, 860
BciT130I	CCWGG	2 cut(s)	899, 969
BcoDI	GTCTC	3 cut(s)	1051, 1193, 1210
BfaI	CTAG	4 cut(s)	23, 237, 303, 786
BfmI	CTRYAG	2 cut(s)	268, 1362
BfoI	RGCGCY	2 cut(s)	933, 1324
BfrI	CTTAAG	1 cut(s)	197
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	7 cut(s)	256, 259, 646, 1215, 1319, 1359, 1362
BlsI	GCNGC	7 cut(s)	257, 260, 647, 1216, 1320, 1360, 1363
Bme1390I	CCNGG	2 cut(s)	899, 969
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	2 cut(s)	899, 969
BmsI	GCATC	3 cut(s)	232, 1201, 1294
BmtI	GCTAGC	1 cut(s)	789
BpiI	GAAGAC	1 cut(s)	798
BplI	GAGNNNNNCTC	2 cut(s)	1190, 1222
Bpu10I	CCTNAGC	1 cut(s)	1324
Bpu14I	TTCGAA	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	275
BsaBI	GATNNNNATC	3 cut(s)	72, 165, 678
BsaJI	CCNNGG	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	180, 214
Bse3DI	GCAATG	1 cut(s)	230
Bse8I	GATNNNNATC	3 cut(s)	72, 165, 678
BseBI	CCWGG	2 cut(s)	899, 969
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	5 cut(s)	166, 193, 542, 546, 875
BseJI	GATNNNNATC	3 cut(s)	72, 165, 678
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	512, 1046
BseNI	ACTGG	2 cut(s)	180, 214
BseXI	GCAGC	5 cut(s)	657, 1226, 1330, 1345, 1348
BsgI	GTGCAG	1 cut(s)	664
BshFI	GGCC	1 cut(s)	1222
BsiHKAI	GWGCWC	1 cut(s)	1339
BslFI	GGGAC	2 cut(s)	108, 672
BsmAI	GTCTC	3 cut(s)	1051, 1193, 1210
BsmBI	CGTCTC	1 cut(s)	1051
BsmFI	GGGAC	2 cut(s)	108, 672
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	1 cut(s)	1222
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	1 cut(s)	1339
Bsp143I	GATC	5 cut(s)	7, 25, 338, 394, 473
BspACI	CCGC	3 cut(s)	255, 258, 503
BspANI	GGCC	1 cut(s)	1222
BspCNI	CTCAG	2 cut(s)	511, 1047
BspLI	GGNNCC	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	1366
BspOI	GCTAGC	1 cut(s)	789
BspPI	GGATC	4 cut(s)	15, 333, 346, 481
BspQI	GCTCTTC	1 cut(s)	655
BspT104I	TTCGAA	1 cut(s)	677
BspTI	CTTAAG	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	180, 214
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	5 cut(s)	7, 25, 338, 394, 473
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	899, 969
Bst4CI	ACNGT	6 cut(s)	360, 423, 951, 1002, 1037, 1204
Bst6I	CTCTTC	1 cut(s)	655
BstAFI	CTTAAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	1304
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	4 cut(s)	643, 787, 791, 1316
BstDEI	CTNAG	5 cut(s)	498, 976, 1055, 1228, 1324
BstF5I	GGATG	5 cut(s)	166, 193, 542, 546, 875
BstH2I	RGCGCY	2 cut(s)	933, 1324
BstHHI	GCGC	3 cut(s)	622, 932, 1323
BstKTI	GATC	5 cut(s)	10, 28, 341, 397, 476
BstMAI	GTCTC	3 cut(s)	1051, 1193, 1210
BstMBI	GATC	5 cut(s)	7, 25, 338, 394, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	607, 1304, 1320
BstNI	CCWGG	2 cut(s)	899, 969
BstNSI	RCATGY	3 cut(s)	286, 383, 1318
BstSCI	CCNGG	2 cut(s)	897, 967
BstSFI	CTRYAG	2 cut(s)	268, 1362
BstV1I	GCAGC	5 cut(s)	657, 1226, 1330, 1345, 1348
BstV2I	GAAGAC	1 cut(s)	798
BstX2I	RGATCY	3 cut(s)	25, 338, 473
BstXI	CCANNNNNNTGG	2 cut(s)	1038, 1118
BstYI	RGATCY	3 cut(s)	25, 338, 473
BsuRI	GGCC	1 cut(s)	1222
BtsCI	GGATG	5 cut(s)	166, 193, 542, 546, 875
BtsI	GCAGTG	1 cut(s)	1438
BtsIMutI	CAGTG	3 cut(s)	173, 956, 1438
Cac8I	GCNNGC	4 cut(s)	643, 787, 791, 1316
CaiI	CAGNNNCTG	1 cut(s)	1358
CfoI	GCGC	3 cut(s)	622, 932, 1323
CsiI	ACCWGGT	1 cut(s)	967
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	6 cut(s)	283, 380, 616, 857, 1105, 1315
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	5 cut(s)	498, 976, 1055, 1228, 1324
DpnI	GATC	5 cut(s)	9, 27, 340, 396, 475
DpnII	GATC	5 cut(s)	7, 25, 338, 394, 473
DraI	TTTAAA	1 cut(s)	1287
Eam1104I	CTCTTC	1 cut(s)	655
EarI	CTCTTC	1 cut(s)	655
Eco130I	CCWWGG	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	1222
Eco47III	AGCGCT	2 cut(s)	931, 1322
Eco57I	CTGAAG	4 cut(s)	1010, 1194, 1263, 1335
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	897, 967
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	761
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	1051
FaeI	CATG	6 cut(s)	286, 383, 619, 860, 1108, 1318
FalI	AAGNNNNNCTT	2 cut(s)	1359, 1391
FaqI	GGGAC	2 cut(s)	108, 672
FatI	CATG	6 cut(s)	282, 379, 615, 856, 1104, 1314
Fnu4HI	GCNGC	7 cut(s)	256, 259, 646, 1215, 1319, 1359, 1362
FokI	GGATG	5 cut(s)	173, 200, 549, 553, 882
Fsp4HI	GCNGC	7 cut(s)	256, 259, 646, 1215, 1319, 1359, 1362
FspBI	CTAG	4 cut(s)	23, 237, 303, 786
GlaI	GCGC	3 cut(s)	621, 931, 1322
GluI	GCNGC	7 cut(s)	256, 259, 646, 1215, 1319, 1359, 1362
HaeII	RGCGCY	2 cut(s)	933, 1324
HaeIII	GGCC	1 cut(s)	1222
HhaI	GCGC	3 cut(s)	622, 932, 1323
Hin1II	CATG	6 cut(s)	286, 383, 619, 860, 1108, 1318
Hin6I	GCGC	3 cut(s)	620, 930, 1321
HinP1I	GCGC	3 cut(s)	620, 930, 1321
HincII	GTYRAC	2 cut(s)	517, 1096
HindII	GTYRAC	2 cut(s)	517, 1096
HinfI	GANTC	8 cut(s)	73, 328, 496, 513, 674, 679, 902, 1141
Hpy166II	GTNNAC	2 cut(s)	517, 1096
Hpy188I	TCNGA	7 cut(s)	364, 670, 799, 1161, 1174, 1210, 1354
Hpy188III	TCNNGA	5 cut(s)	23, 374, 434, 725, 1196
Hpy8I	GTNNAC	2 cut(s)	517, 1096
HpyAV	CCTTC	3 cut(s)	144, 547, 1361
HpyCH4III	ACNGT	6 cut(s)	360, 423, 951, 1002, 1037, 1204
HpyF10VI	GCNNNNNNNGC	3 cut(s)	607, 1304, 1320
HpyF3I	CTNAG	5 cut(s)	498, 976, 1055, 1228, 1324
Hsp92II	CATG	6 cut(s)	286, 383, 619, 860, 1108, 1318
HspAI	GCGC	3 cut(s)	620, 930, 1321
Kzo9I	GATC	5 cut(s)	7, 25, 338, 394, 473
LguI	GCTCTTC	1 cut(s)	655
Lsp1109I	GCAGC	5 cut(s)	657, 1226, 1330, 1345, 1348
LweI	GCATC	3 cut(s)	232, 1201, 1294
MabI	ACCWGGT	1 cut(s)	967
MaeI	CTAG	4 cut(s)	23, 237, 303, 786
MaeIII	GTNAC	4 cut(s)	216, 749, 945, 1345
MalI	GATC	5 cut(s)	9, 27, 340, 396, 475
MboI	GATC	5 cut(s)	7, 25, 338, 394, 473
MflI	RGATCY	3 cut(s)	25, 338, 473
MhlI	GDGCHC	1 cut(s)	1339
MluCI	AATT	4 cut(s)	478, 544, 841, 1190
MlyI	GAGTC	4 cut(s)	322, 490, 522, 1150
MmeI	TCCRAC	2 cut(s)	127, 1310
MnlI	CCTC	9 cut(s)	30, 299, 447, 573, 664, 707, 820, 1252, 1348
Mph1103I	ATGCAT	1 cut(s)	761
MroXI	GAANNNNTTC	2 cut(s)	209, 1269
MseI	TTAA	6 cut(s)	198, 308, 816, 1017, 1128, 1286
MslI	CAYNNNNRTG	3 cut(s)	281, 861, 1103
MspCI	CTTAAG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	899, 969
MssI	GTTTAAAC	1 cut(s)	1287
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	2 cut(s)	899, 969
MwoI	GCNNNNNNNGC	3 cut(s)	607, 1304, 1320
NdeII	GATC	5 cut(s)	7, 25, 338, 394, 473
NheI	GCTAGC	1 cut(s)	785
NlaIII	CATG	6 cut(s)	286, 383, 619, 860, 1108, 1318
NlaIV	GGNNCC	1 cut(s)	340
NmeAIII	GCCGAG	1 cut(s)	1405
NmuCI	GTSAC	1 cut(s)	216
NsiI	ATGCAT	1 cut(s)	761
NspI	RCATGY	3 cut(s)	286, 383, 1318
NspV	TTCGAA	1 cut(s)	677
PaeI	GCATGC	1 cut(s)	1318
PceI	AGGCCT	1 cut(s)	1222
PciI	ACATGT	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	655
PctI	GAATGC	1 cut(s)	643
PdmI	GAANNNNTTC	2 cut(s)	209, 1269
PfeI	GAWTC	4 cut(s)	73, 674, 679, 902
PkrI	GCNGC	7 cut(s)	257, 260, 647, 1216, 1320, 1360, 1363
PleI	GAGTC	4 cut(s)	322, 490, 521, 1149
PmeI	GTTTAAAC	1 cut(s)	1287
PpsI	GAGTC	4 cut(s)	322, 490, 521, 1149
PscI	ACATGT	1 cut(s)	282
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	897, 967
PspGI	CCWGG	2 cut(s)	897, 967
PspN4I	GGNNCC	1 cut(s)	340
PstI	CTGCAG	1 cut(s)	1366
PstNI	CAGNNNCTG	1 cut(s)	1358
PsuI	RGATCY	3 cut(s)	25, 338, 473
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	3 cut(s)	281, 861, 1103
SapI	GCTCTTC	1 cut(s)	655
SaqAI	TTAA	6 cut(s)	198, 308, 816, 1017, 1128, 1286
SatI	GCNGC	7 cut(s)	256, 259, 646, 1215, 1319, 1359, 1362
Sau3AI	GATC	5 cut(s)	7, 25, 338, 394, 473
SchI	GAGTC	4 cut(s)	322, 490, 522, 1150
ScrFI	CCNGG	2 cut(s)	899, 969
SduI	GDGCHC	1 cut(s)	1339
SexAI	ACCWGGT	1 cut(s)	967
SfaNI	GCATC	3 cut(s)	232, 1201, 1294
SfcI	CTRYAG	2 cut(s)	268, 1362
SfuI	TTCGAA	1 cut(s)	677
SmiMI	CAYNNNNRTG	3 cut(s)	281, 861, 1103
SmlI	CTYRAG	2 cut(s)	197, 290
SmoI	CTYRAG	2 cut(s)	197, 290
SphI	GCATGC	1 cut(s)	1318
Sse9I	AATT	4 cut(s)	478, 544, 841, 1190
SseBI	AGGCCT	1 cut(s)	1222
SsiI	CCGC	3 cut(s)	255, 258, 503
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	4 cut(s)	23, 237, 303, 786
StuI	AGGCCT	1 cut(s)	1222
StyD4I	CCNGG	2 cut(s)	897, 967
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	6 cut(s)	360, 423, 951, 1002, 1037, 1204
TaqI	TCGA	4 cut(s)	458, 677, 712, 848
TaqII	GACCGA	1 cut(s)	1260
TasI	AATT	4 cut(s)	478, 544, 841, 1190
TauI	GCSGC	2 cut(s)	258, 261
TfiI	GAWTC	4 cut(s)	73, 674, 679, 902
Tru1I	TTAA	6 cut(s)	198, 308, 816, 1017, 1128, 1286
Tru9I	TTAA	6 cut(s)	198, 308, 816, 1017, 1128, 1286
TscAI	CASTG	3 cut(s)	180, 956, 1438
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	5 cut(s)	645, 1214, 1318, 1358, 1361
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	218, 557
TspGWI	ACGGA	2 cut(s)	586, 1356
TspRI	CASTG	3 cut(s)	180, 956, 1438
Vha464I	CTTAAG	1 cut(s)	197
XapI	RAATTY	2 cut(s)	544, 1190
XbaI	TCTAGA	1 cut(s)	22
XceI	RCATGY	3 cut(s)	286, 383, 1318
XmnI	GAANNNNTTC	2 cut(s)	209, 1269
XspI	CTAG	4 cut(s)	23, 237, 303, 786
Zsp2I	ATGCAT	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.