Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008784

Physical Location & Seq

Genomic Coordinates Reverse (-)

45810548 .. 45812607

Gene Structure 2060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025448

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCGCAGGAGCAAGAGTTGAATGTGTGCAGCTCTTCTGCTTCTCCATCATCAGAGGATTCGAATCCTTGTCCCATCTGCCTCGCACCCATCTTTCGACTTTCTTATCTTGACAAATGTTTCCCTTTGTCTTATCAAGTGCTCACAAGTGTAGGTTACAGTGCTATTATACTGAACCAGGAAGAAGATGTTGACATCATCATGCACCACATACTTGGCGTGATTAAATCTCTCATGAGTCATAAGCAAAAATGTCAGACGATAACATATGAAGCAAAACAAAGAGAATTTCAAGAGGCAATCTCCGATGCAGCAAGGCCTTTCGTAGCCGCAAGAACTGACCGATTTGTGAATGAGGTGGAACTATTTCTTGCTTCAGGTTTAAACATTGAAGCATATGATGCTGTGTGCATGCAGCGTTTAGGTTGGAGTGCTCGCGGAGTAACTACTGAGGCCACTGCAGAAGAACTTGCCGAGCACAGACCTGTTATCCCTTACTTGCATATTTTTGATGACTTTGACAGCAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

178

Amino Acids

19.81

Weight (kDa)

4.67

Isoelectric Point (pI)

62.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05250 AT3G05250 AT3G05250
fragaria_vesca	FvH4_6g05630
malus_domestica	MD04G1207100.v1.1 MD12G1221000.v1.1 MD12G1221200.v1.1
prunus_persica	Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1
pyrus_communis	pycom04g18310
rosa_chinensis	RchiOBHm_Chr3g0454381
rosa_laevigata	RLG00000025446 RLG00000025448
rosa_multiflora	Rmu_sc0000006.1_g000002 Rmu_sc0000006.1_g000019 Rmu_sc0007209.1_g000011
rosa_roxburghii	Rroxscaffold_6G00425150
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058600 Rh3BG060500
rosa_wichuraiana	Rw3G004530 Rw3G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	438
AciI	CCGC	2 cut(s)	330, 438
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	360
AgsI	TTSAA	3 cut(s)	22, 293, 392
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw21I	GWGCWC	3 cut(s)	144, 436, 480
AoxI	GGCC	2 cut(s)	317, 453
ApeKI	GCWGC	3 cut(s)	30, 311, 415
ApoI	RAATTY	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	7
AsuII	TTCGAA	1 cut(s)	62
Bbv12I	GWGCWC	3 cut(s)	144, 436, 480
BbvI	GCAGC	3 cut(s)	42, 323, 427
BccI	CCATC	3 cut(s)	55, 83, 98
BciT130I	CCWGG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	4 cut(s)	31, 312, 330, 416
BlsI	GCNGC	4 cut(s)	32, 313, 331, 417
Bme1390I	CCNGG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	298, 391
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
Bpu14I	TTCGAA	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	63
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	179
BseJI	GATNNNNATC	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	441
BseXI	GCAGC	3 cut(s)	42, 323, 427
BsgI	GTGCAG	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	2 cut(s)	319, 455
BsiHKAI	GWGCWC	3 cut(s)	144, 436, 480
BslFI	GGGAC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	319, 455
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	3 cut(s)	144, 436, 480
BspACI	CCGC	2 cut(s)	330, 438
BspANI	GGCC	2 cut(s)	319, 455
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	463
BspQI	GCTCTTC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	413, 436
BstDEI	CTNAG	1 cut(s)	450
BstFNI	CGCG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	459
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	3 cut(s)	42, 323, 427
BstXI	CCANNNNNNTGG	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	319, 455
BtsI	GCAGTG	2 cut(s)	456, 532
BtsIMutI	CAGTG	3 cut(s)	166, 456, 532
Cac8I	GCNNGC	2 cut(s)	413, 436
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	3 cut(s)	202, 235, 412
CviJI	RGCY	4 cut(s)	33, 319, 329, 455
CviKI_1	RGCY	4 cut(s)	33, 319, 329, 455
DdeI	CTNAG	1 cut(s)	450
DraI	TTTAAA	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	205, 238, 415
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	3 cut(s)	201, 234, 411
FauNDI	CATATG	2 cut(s)	268, 397
Fnu4HI	GCNGC	4 cut(s)	31, 312, 330, 416
Fsp4HI	GCNGC	4 cut(s)	31, 312, 330, 416
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	31, 312, 330, 416
HaeIII	GGCC	2 cut(s)	319, 455
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	205, 238, 415
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	59, 64, 238
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	55, 258, 307
Hpy188III	TCNNGA	3 cut(s)	110, 235, 293
Hpy8I	GTNNAC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	7 cut(s)	30, 205, 311, 411, 415, 461, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	1 cut(s)	450
Hsp92II	CATG	3 cut(s)	205, 238, 415
HspAI	GCGC	1 cut(s)	5
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	164, 191, 363, 498
Lsp1109I	GCAGC	3 cut(s)	42, 323, 427
LweI	GCATC	2 cut(s)	298, 391
MaeIII	GTNAC	2 cut(s)	155, 442
MboII	GAAGA	4 cut(s)	27, 194, 197, 476
MhlI	GDGCHC	3 cut(s)	144, 436, 480
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	5 cut(s)	49, 92, 289, 349, 445
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	2 cut(s)	225, 383
MslI	CAYNNNNRTG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	179
MssI	GTTTAAAC	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeI	CATATG	2 cut(s)	268, 397
NlaIII	CATG	3 cut(s)	205, 238, 415
NmeAIII	GCCGAG	1 cut(s)	499
NspI	RCATGY	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	415
PagI	TCATGA	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	59, 64
PkrI	GCNGC	4 cut(s)	32, 313, 331, 417
PleI	GAGTC	1 cut(s)	246
PmeI	GTTTAAAC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	225, 383
SatI	GCNGC	4 cut(s)	31, 312, 330, 416
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	3 cut(s)	144, 436, 480
SetI	ASST	6 cut(s)	35, 157, 360, 382, 427, 487
SfaNI	GCATC	2 cut(s)	298, 391
SfcI	CTRYAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	200
SphI	GCATGC	1 cut(s)	415
Sse9I	AATT	1 cut(s)	287
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	2 cut(s)	330, 438
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	62, 97
TaqII	GACCGA	1 cut(s)	357
TasI	AATT	1 cut(s)	287
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	59, 64
Tru1I	TTAA	2 cut(s)	225, 383
Tru9I	TTAA	2 cut(s)	225, 383
TscAI	CASTG	3 cut(s)	166, 463, 532
TseI	GCWGC	3 cut(s)	30, 311, 415
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	3 cut(s)	166, 463, 532
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.