Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008784

Physical Location & Seq

Genomic Coordinates Forward (+)

3932373 .. 3933883

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G004560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGACAGAGTTGTTGCTAGCAAGCAGTCTGACCCGTCTTCCTCCGTAAAATGTCCTTTGTGCAAGACAGATAATTTTTCGATTATACATGGATATCATGGATGTTCGTTTCAAAGGCATTACATCAACCAGGATTCAGGGGATTGCTTTGTCTTATCAAGCGCTCAGAAGTATAGGTTACAGTGCTATTATACTGAACCAGGTTTCTTAGATGACATATCTTTGATGTATCGATCACGGTATTGGAAATCCTTTAAGTATCTTCAGCCAAACTGTTGGCTTCAAAGTTGGCTGAGACGGGAAATCCAAGCTCTTATACAGGAAGAAGATGTTGACATCATCATGCACCACATACTTGGCGTGATTAAATCCCTAATGAGTCATATGCAAAAAGGTCAGACGAAATCATCTGAAGCAAAACAGAGAGAATTTCAAGAGACAGTCTCCGATGCAGCAAGGCCTTTCTTAGCCACAAGAACTGACCGATTTGTAAATGAGGTGGAACTATTTCTTGCTTCAGGTTTAAACATTGAAGCATACGATGCTGTGTGCATGCAGCGCTTAGGTTGGAGTGCTCACGGAGTAACTTCAGAGGCTGCTGCAGAAGGAGAACTTGCCGAGCATAGACCTGTTATCCCTTACTTGCATATTTTTGATGACTTTGACAGCAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

225

Amino Acids

25.89

Weight (kDa)

5.7

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05250 AT3G05250 AT3G05250
fragaria_vesca	FvH4_6g05630
malus_domestica	MD04G1207100.v1.1 MD12G1221000.v1.1 MD12G1221200.v1.1
prunus_persica	Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1
pyrus_communis	pycom04g18310
rosa_chinensis	RchiOBHm_Chr3g0454381
rosa_laevigata	RLG00000025446 RLG00000025448
rosa_multiflora	Rmu_sc0000006.1_g000002 Rmu_sc0000006.1_g000019 Rmu_sc0007209.1_g000011
rosa_roxburghii	Rroxscaffold_6G00425150
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058600 Rh3BG060500
rosa_wichuraiana	Rw3G004530 Rw3G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	428
AcuI	CTGAAG	4 cut(s)	248, 432, 501, 573
AfeI	AGCGCT	2 cut(s)	163, 560
AgsI	TTSAA	4 cut(s)	113, 284, 434, 533
AjnI	CCWGG	2 cut(s)	129, 199
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	3 cut(s)	289, 431, 448
AlwNI	CAGNNNCTG	1 cut(s)	596
Aor51HI	AGCGCT	2 cut(s)	163, 560
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	4 cut(s)	452, 556, 596, 599
ApoI	RAATTY	1 cut(s)	428
Asp700I	GAANNNNTTC	1 cut(s)	507
AspLEI	GCGC	2 cut(s)	164, 561
AsuNHI	GCTAGC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	4 cut(s)	464, 568, 583, 586
BciT130I	CCWGG	2 cut(s)	131, 201
BcoDI	GTCTC	3 cut(s)	289, 431, 448
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	2 cut(s)	165, 562
BisI	GCNGC	4 cut(s)	453, 557, 597, 600
BlsI	GCNGC	4 cut(s)	454, 558, 598, 601
Bme1390I	CCNGG	2 cut(s)	131, 201
BmrFI	CCNGG	2 cut(s)	131, 201
BmsI	GCATC	2 cut(s)	439, 532
BmtI	GCTAGC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
Bpu10I	CCTNAGC	1 cut(s)	562
Bsa29I	ATCGAT	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	131, 201
BseCI	ATCGAT	1 cut(s)	232
BseGI	GGATG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	179, 284
BseXI	GCAGC	4 cut(s)	464, 568, 583, 586
BshFI	GGCC	1 cut(s)	460
BshVI	ATCGAT	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	577
BsmAI	GTCTC	3 cut(s)	289, 431, 448
BsmBI	CGTCTC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	460
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	2 cut(s)	178, 285
BspDI	ATCGAT	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	21
BssMI	GATC	1 cut(s)	233
Bst2UI	CCWGG	2 cut(s)	131, 201
Bst4CI	ACNGT	4 cut(s)	183, 240, 275, 442
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	19, 23, 554
BstDEI	CTNAG	5 cut(s)	165, 208, 293, 466, 562
BstF5I	GGATG	1 cut(s)	107
BstH2I	RGCGCY	2 cut(s)	165, 562
BstHHI	GCGC	2 cut(s)	164, 561
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	3 cut(s)	289, 431, 448
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 558
BstNI	CCWGG	2 cut(s)	131, 201
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	129, 199
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	4 cut(s)	464, 568, 583, 586
BstV2I	GAAGAC	1 cut(s)	30
BstXI	CCANNNNNNTGG	2 cut(s)	276, 356
Bsu15I	ATCGAT	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	460
BsuTUI	ATCGAT	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	188, 676
Cac8I	GCNNGC	3 cut(s)	19, 23, 554
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	2 cut(s)	164, 561
ClaI	ATCGAT	1 cut(s)	232
CsiI	ACCWGGT	1 cut(s)	199
CviAII	CATG	4 cut(s)	89, 98, 343, 553
CviJI	RGCY	7 cut(s)	268, 280, 292, 311, 460, 470, 596
CviKI_1	RGCY	7 cut(s)	268, 280, 292, 311, 460, 470, 596
DdeI	CTNAG	5 cut(s)	165, 208, 293, 466, 562
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
DraI	TTTAAA	1 cut(s)	525
Eco147I	AGGCCT	1 cut(s)	460
Eco32I	GATATC	1 cut(s)	95
Eco47III	AGCGCT	2 cut(s)	163, 560
Eco57I	CTGAAG	4 cut(s)	248, 432, 501, 573
EcoRII	CCWGG	2 cut(s)	129, 199
EcoRV	GATATC	1 cut(s)	95
Esp3I	CGTCTC	1 cut(s)	289
FaeI	CATG	4 cut(s)	92, 101, 346, 556
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FatI	CATG	4 cut(s)	88, 97, 342, 552
FauNDI	CATATG	1 cut(s)	384
Fnu4HI	GCNGC	4 cut(s)	453, 557, 597, 600
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	453, 557, 597, 600
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	2 cut(s)	163, 560
GluI	GCNGC	4 cut(s)	453, 557, 597, 600
HaeII	RGCGCY	2 cut(s)	165, 562
HaeIII	GGCC	1 cut(s)	460
HhaI	GCGC	2 cut(s)	164, 561
Hin1II	CATG	4 cut(s)	92, 101, 346, 556
Hin6I	GCGC	2 cut(s)	162, 559
HinP1I	GCGC	2 cut(s)	162, 559
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	134, 379
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	6 cut(s)	31, 168, 399, 412, 448, 592
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	4 cut(s)	183, 240, 275, 442
HpyCH4V	TGCA	8 cut(s)	63, 346, 388, 452, 552, 556, 602, 646
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 558
HpyF3I	CTNAG	5 cut(s)	165, 208, 293, 466, 562
Hsp92II	CATG	4 cut(s)	92, 101, 346, 556
HspAI	GCGC	2 cut(s)	162, 559
Kzo9I	GATC	1 cut(s)	233
LpnPI	CCDG	8 cut(s)	116, 123, 143, 186, 213, 305, 504, 642
Lsp1109I	GCAGC	4 cut(s)	464, 568, 583, 586
LweI	GCATC	2 cut(s)	439, 532
MabI	ACCWGGT	1 cut(s)	199
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	177, 583
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	4 cut(s)	30, 254, 335, 338
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	2 cut(s)	73, 428
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	3 cut(s)	52, 490, 586
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	3 cut(s)	255, 366, 524
MslI	CAYNNNNRTG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	131, 201
MssI	GTTTAAAC	1 cut(s)	525
MvaI	CCWGG	2 cut(s)	131, 201
MwoI	GCNNNNNNNGC	2 cut(s)	542, 558
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	1 cut(s)	233
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	4 cut(s)	92, 101, 346, 556
NmeAIII	GCCGAG	1 cut(s)	643
NspI	RCATGY	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	4 cut(s)	454, 558, 598, 601
PleI	GAGTC	1 cut(s)	387
PmeI	GTTTAAAC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	129, 199
PspGI	CCWGG	2 cut(s)	129, 199
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	596
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	3 cut(s)	255, 366, 524
SatI	GCNGC	4 cut(s)	453, 557, 597, 600
Sau3AI	GATC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	2 cut(s)	131, 201
SduI	GDGCHC	1 cut(s)	577
SetI	ASST	8 cut(s)	179, 205, 313, 397, 501, 523, 568, 631
SexAI	ACCWGGT	1 cut(s)	199
SfaNI	GCATC	2 cut(s)	439, 532
SfcI	CTRYAG	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	341
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	2 cut(s)	73, 428
SseBI	AGGCCT	1 cut(s)	460
SspMI	CTAG	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	460
StyD4I	CCNGG	2 cut(s)	129, 199
TaaI	ACNGT	4 cut(s)	183, 240, 275, 442
TaqI	TCGA	2 cut(s)	80, 232
TaqII	GACCGA	1 cut(s)	498
TasI	AATT	2 cut(s)	73, 428
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	3 cut(s)	255, 366, 524
Tru9I	TTAA	3 cut(s)	255, 366, 524
TscAI	CASTG	2 cut(s)	188, 676
TseI	GCWGC	4 cut(s)	452, 556, 596, 599
TspGWI	ACGGA	2 cut(s)	34, 594
TspRI	CASTG	2 cut(s)	188, 676
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.