Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008784

Physical Location & Seq

Genomic Coordinates Reverse (-)

20383267 .. 20385293

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAGAAGCGAGGATTGAATGCCGACAAAATCAAGAGCTCTTCTTCTTGTTCAGAGGAGGACCCAAATCCTTGCCCCATCTGCCTCGGACCCATAATTCAAGATTCTTATCTCGAAAAATGTCTCCATAAGTTCTGTTACAAGTGCATTTTGCGTTGGACGGAAGTTGTTGCTCGCAAGCAGTCTTGCCCGCCGGATTATATAAAGTGTCCTCTTTGCAAGACGGAAAATGTTTGTATAATATATGATTACGGTGGATGTTCTTTTCAAAAGCATTGCATTGATCAGGATTCAGGCTTTATCTTATCGAAGGATCACAAGTATAGATTGCAATGTTATTACACCGAACCAGGTTTCTTAAATGACATATTTGACATATCACGCTATTGGAAGTCCCGCAAGTATCTTCAGCCAAATCGCTGGCTCCAAAGTTGGTTGAGAAGGGAAATCCAAGCTCTCATGCAGGAGGAAGATGTTGACATCGTCATGCACCACATACATGGCGTGATTAAGTCATCCTTGACGAGGGATGAGCAGAAAGGTCGAACAACAGCACCTGAAGAAAAACAAAGAGAATTTCAAGAATCAACCTCTGATGCAGCAGGGCCCTTCCTGGCAGCAAAAACCAATCGCTTTGTAAATGAGGTGGAACTATTTCTTGCTTCGGGTTTGAACATTGAAGCATACGATGCTGTGTGCATGCAACGCTTAGGTTGGAGTGCCCCGGGAGTAACTACGGAGCCAGCAGAGGGAGACCTTGCCGAACATAGACCTGTGATTCCTTACTTGAACATATTGTATGACTCCGACTGCAGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

274

Amino Acids

31.44

Weight (kDa)

5.6

Isoelectric Point (pI)

71.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4	PF00097	25 - 73	1.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	25 - 64	9.4e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05250 AT3G05250 AT3G05250
fragaria_vesca	FvH4_6g05630
malus_domestica	MD04G1207100.v1.1 MD12G1221000.v1.1 MD12G1221200.v1.1
prunus_persica	Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1 Prupe.6G327800_v2.0.a1
pyrus_communis	pycom04g18310
rosa_chinensis	RchiOBHm_Chr3g0454381
rosa_laevigata	RLG00000025446 RLG00000025448
rosa_multiflora	Rmu_sc0000006.1_g000002 Rmu_sc0000006.1_g000019 Rmu_sc0007209.1_g000011
rosa_roxburghii	Rroxscaffold_6G00425150
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058600 Rh3BG060500
rosa_wichuraiana	Rw3G004530 Rw3G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	191, 397
AclWI	GGATC	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	2 cut(s)	392, 579
AfiI	CCNNNNNNNGG	2 cut(s)	525, 749
AgsI	TTSAA	7 cut(s)	19, 101, 269, 581, 673, 680, 790
AjnI	CCWGG	2 cut(s)	349, 612
AluBI	AGCT	2 cut(s)	39, 455
AluI	AGCT	2 cut(s)	39, 455
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	2 cut(s)	128, 747
AlwI	GGATC	1 cut(s)	321
AlwNI	CAGNNNCTG	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	724
AoxI	GGCC	1 cut(s)	605
ApaI	GGGCCC	1 cut(s)	609
ApeKI	GCWGC	3 cut(s)	599, 617, 813
ApoI	RAATTY	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	654
AspS9I	GGNCC	4 cut(s)	61, 89, 605, 606
AsuC2I	CCSGG	2 cut(s)	725, 726
AvaI	CYCGRG	1 cut(s)	724
AvaII	GGWCC	2 cut(s)	61, 89
BaeGI	GKGCMC	2 cut(s)	609, 724
BanII	GRGCYC	2 cut(s)	41, 609
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	611, 629
BccI	CCATC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BciT130I	CCWGG	2 cut(s)	351, 614
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	2 cut(s)	725, 726
BcoDI	GTCTC	2 cut(s)	128, 747
BfmI	CTRYAG	1 cut(s)	811
BisI	GCNGC	3 cut(s)	600, 618, 814
BlsI	GCNGC	3 cut(s)	601, 619, 815
Bme1390I	CCNGG	4 cut(s)	351, 614, 725, 726
Bme18I	GGWCC	2 cut(s)	61, 89
BmeT110I	CYCGRG	1 cut(s)	724
BmgT120I	GGNCC	4 cut(s)	61, 89, 605, 606
BmiI	GGNNCC	5 cut(s)	63, 91, 425, 607, 741
BmrFI	CCNGG	4 cut(s)	351, 614, 725, 726
BmsI	GCATC	2 cut(s)	586, 679
Bpu10I	CCTNAGC	1 cut(s)	709
BpuMI	CCSGG	2 cut(s)	725, 726
BsaBI	GATNNNNATC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	747
BsaJI	CCNNGG	3 cut(s)	85, 723, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 749
Bse3DI	GCAATG	2 cut(s)	274, 338
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	351, 614
BseDI	CCNNGG	3 cut(s)	85, 723, 724
BseGI	GGATG	3 cut(s)	263, 515, 535
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	525, 749
BseMI	GCAATG	2 cut(s)	274, 338
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	2 cut(s)	609, 724
BseXI	GCAGC	2 cut(s)	611, 629
BshFI	GGCC	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	724
BsiSI	CCGG	2 cut(s)	194, 725
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	2 cut(s)	525, 749
BsmAI	GTCTC	2 cut(s)	128, 747
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	607
Bso31I	GGTCTC	1 cut(s)	747
BsoBI	CYCGRG	1 cut(s)	724
Bsp120I	GGGCCC	1 cut(s)	605
Bsp1286I	GDGCHC	3 cut(s)	41, 609, 724
Bsp143I	GATC	2 cut(s)	283, 313
BspACI	CCGC	2 cut(s)	191, 397
BspANI	GGCC	1 cut(s)	607
BspLI	GGNNCC	5 cut(s)	63, 91, 425, 607, 741
BspMAI	CTGCAG	1 cut(s)	815
BspPI	GGATC	1 cut(s)	321
BspQI	GCTCTTC	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	747
BsrDI	GCAATG	2 cut(s)	274, 338
BssECI	CCNNGG	3 cut(s)	85, 723, 724
BssMI	GATC	2 cut(s)	283, 313
Bst2UI	CCWGG	2 cut(s)	351, 614
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstC8I	GCNNGC	6 cut(s)	175, 179, 191, 422, 701, 744
BstDEI	CTNAG	1 cut(s)	709
BstENI	CCTNNNNNAGG	1 cut(s)	523
BstF5I	GGATG	3 cut(s)	263, 515, 535
BstKTI	GATC	2 cut(s)	286, 316
BstMAI	GTCTC	2 cut(s)	128, 747
BstMBI	GATC	2 cut(s)	283, 313
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 689, 705
BstNI	CCWGG	2 cut(s)	351, 614
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	4 cut(s)	349, 612, 723, 724
BstSFI	CTRYAG	1 cut(s)	811
BstSLI	GKGCMC	2 cut(s)	609, 724
BstV1I	GCAGC	2 cut(s)	611, 629
BstXI	CCANNNNNNTGG	2 cut(s)	420, 500
BsuRI	GGCC	1 cut(s)	607
BtsCI	GGATG	3 cut(s)	263, 515, 535
Cac8I	GCNNGC	6 cut(s)	175, 179, 191, 422, 701, 744
CaiI	CAGNNNCTG	1 cut(s)	557
Cfr13I	GGNCC	4 cut(s)	61, 89, 605, 606
Cfr9I	CCCGGG	1 cut(s)	724
CsiI	ACCWGGT	1 cut(s)	349
CviAII	CATG	4 cut(s)	460, 487, 500, 700
CviJI	RGCY	7 cut(s)	39, 297, 412, 424, 455, 607, 742
CviKI_1	RGCY	7 cut(s)	39, 297, 412, 424, 455, 607, 742
DdeI	CTNAG	1 cut(s)	709
DpnI	GATC	2 cut(s)	285, 315
DpnII	GATC	2 cut(s)	283, 313
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	39
Eco24I	GRGCYC	2 cut(s)	41, 609
Eco31I	GGTCTC	1 cut(s)	747
Eco47I	GGWCC	2 cut(s)	61, 89
Eco53kI	GAGCTC	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	392, 579
Eco88I	CYCGRG	1 cut(s)	724
EcoICRI	GAGCTC	1 cut(s)	39
EcoNI	CCTNNNNNAGG	1 cut(s)	523
EcoO109I	RGGNCCY	3 cut(s)	61, 605, 606
EcoRII	CCWGG	2 cut(s)	349, 612
EcoT38I	GRGCYC	2 cut(s)	41, 609
FaeI	CATG	4 cut(s)	463, 490, 503, 703
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	4 cut(s)	459, 486, 499, 699
FauI	CCCGC	2 cut(s)	198, 404
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	600, 618, 814
FokI	GGATG	3 cut(s)	270, 502, 542
FriOI	GRGCYC	2 cut(s)	41, 609
Fsp4HI	GCNGC	3 cut(s)	600, 618, 814
GluI	GCNGC	3 cut(s)	600, 618, 814
HaeIII	GGCC	1 cut(s)	607
HapII	CCGG	2 cut(s)	194, 725
Hin1II	CATG	4 cut(s)	463, 490, 503, 703
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	5 cut(s)	104, 290, 584, 778, 803
HpaII	CCGG	2 cut(s)	194, 725
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	4 cut(s)	55, 89, 595, 808
Hpy188III	TCNNGA	5 cut(s)	34, 101, 113, 287, 581
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	3 cut(s)	304, 435, 619
HpyCH4III	ACNGT	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 689, 705
HpyF3I	CTNAG	1 cut(s)	709
Hsp92II	CATG	4 cut(s)	463, 490, 503, 703
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	283, 313
LguI	GCTCTTC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	429, 739
Lsp1109I	GCAGC	2 cut(s)	611, 629
LweI	GCATC	2 cut(s)	586, 679
MabI	ACCWGGT	1 cut(s)	349
MaeIII	GTNAC	2 cut(s)	137, 730
MalI	GATC	2 cut(s)	285, 315
MboI	GATC	2 cut(s)	283, 313
MboII	GAAGA	5 cut(s)	33, 36, 398, 482, 572
MhlI	GDGCHC	3 cut(s)	41, 609, 724
MluCI	AATT	2 cut(s)	96, 575
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	2 cut(s)	137, 695
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	2 cut(s)	359, 510
MslI	CAYNNNNRTG	2 cut(s)	485, 498
MspI	CCGG	2 cut(s)	194, 725
MspR9I	CCNGG	4 cut(s)	351, 614, 725, 726
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	2 cut(s)	351, 614
MwoI	GCNNNNNNNGC	3 cut(s)	81, 689, 705
NciI	CCSGG	2 cut(s)	725, 726
NdeII	GATC	2 cut(s)	283, 313
NlaIII	CATG	4 cut(s)	463, 490, 503, 703
NlaIV	GGNNCC	5 cut(s)	63, 91, 425, 607, 741
NspI	RCATGY	1 cut(s)	703
PaeI	GCATGC	1 cut(s)	703
PciSI	GCTCTTC	1 cut(s)	46
PctI	GAATGC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	4 cut(s)	104, 290, 584, 778
PflFI	GACNNNGTC	1 cut(s)	482
PkrI	GCNGC	3 cut(s)	601, 619, 815
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
PpuMI	RGGWCCY	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	349, 612
PspGI	CCWGG	2 cut(s)	349, 612
PspN4I	GGNNCC	5 cut(s)	63, 91, 425, 607, 741
PspOMI	GGGCCC	1 cut(s)	605
PspPI	GGNCC	4 cut(s)	61, 89, 605, 606
PspPPI	RGGWCCY	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	815
PstNI	CAGNNNCTG	1 cut(s)	557
PsyI	GACNNNGTC	1 cut(s)	482
RseI	CAYNNNNRTG	2 cut(s)	485, 498
SacI	GAGCTC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	359, 510
SatI	GCNGC	3 cut(s)	600, 618, 814
Sau3AI	GATC	2 cut(s)	283, 313
Sau96I	GGNCC	4 cut(s)	61, 89, 605, 606
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	4 cut(s)	351, 614, 725, 726
SduI	GDGCHC	3 cut(s)	41, 609, 724
SexAI	ACCWGGT	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	586, 679
SfcI	CTRYAG	1 cut(s)	811
SinI	GGWCC	2 cut(s)	61, 89
SmaI	CCCGGG	1 cut(s)	726
SmiMI	CAYNNNNRTG	2 cut(s)	485, 498
SphI	GCATGC	1 cut(s)	703
Sse9I	AATT	2 cut(s)	96, 575
SsiI	CCGC	2 cut(s)	191, 397
SstI	GAGCTC	1 cut(s)	41
StyD4I	CCNGG	4 cut(s)	349, 612, 723, 724
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	3 cut(s)	114, 308, 544
TasI	AATT	2 cut(s)	96, 575
TfiI	GAWTC	4 cut(s)	104, 290, 584, 778
Tru1I	TTAA	2 cut(s)	359, 510
Tru9I	TTAA	2 cut(s)	359, 510
TseI	GCWGC	3 cut(s)	599, 617, 813
TspGWI	ACGGA	3 cut(s)	176, 239, 752
TspMI	CCCGGG	1 cut(s)	724
Tth111I	GACNNNGTC	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	61, 89
XagI	CCTNNNNNAGG	1 cut(s)	523
XapI	RAATTY	1 cut(s)	575
XceI	RCATGY	1 cut(s)	703
XmaI	CCCGGG	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.