FvH4_6g06920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007367
Physical Location & Seq
Forward (+)
4172929 .. 4176180
3252 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06920.t2

Sequence Viewer

Length: 819 bp
ATGGGTATGGCCCCCAACCTCAATCCCACCATTTCCATGTCCTTAACTCCATTCCCAACTTCCTCTCCATTTTCATTCAAAACCCAAAACAGCTCATTGTTCTCTAACACAGTCACTTCAACAATTCACACCCATAAAACCTCATTCCCACTCAGAATCTGCACTAACTCACAGTTCTTTAGCACCAGAAGACTGTTCCTTCCTTCAGTTTCTGGTATCTGGGATGCTATCACCGGCGGCAACAATCCCCGTGAAGCCGTTGCCGCAATCCGACGTGGAATGGTTCTGTTTAGACAGGGTGATGTTGCAGGGTCTGTAGCAGAATTTGACAAGGCGATTGAGCTTGATCGTCGCCAAAAGGCATATCTTTGGCAAAGGGGGCTGTCACTTTACTATCTGGATAGATTTGAAGAAGGGGCAGAGCAGTTCCGAATAGATGTTGCCCAGAATCCAAATGATACAGAGGAATCCATTTGGTGTTTTCTCTGTGAAGCTCAATTATATGGAGTTAAGGAAGCAAGGGAACGGTTTCTTGAGGTTGGCCGCGATCCGAGACCTGTCATGAGAGAAGCCTATAACATGTTTAAAGACGGTGGTGATCCAGAAAAGCTTGCTGATGCATTTAAAAATGGCCGAGACAGTGATTATTTCTACGCTTCTCTATATGCTGGCCTTTACTATGAAGCTCAGAAAAAACCCGACGAGGCCAAAGCTCACATCCTTGCTGCTTATCAGTCTTCCTATGGACAAAGATCTGATGATTACATGGCTTCACTTGCAAAGGTTCACTGTGTTTGTCGAAATTGGGAATCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.9

Weight (kDa)

6.14

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 546
AciI CCGC 3 cut(s) 237, 264, 544
AclWI GGATC 2 cut(s) 542, 593
AcoI YGGCCR 2 cut(s) 541, 631
AcsI RAATTY 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 579
AgsI TTSAA 3 cut(s) 79, 120, 410
AjiI CACGTC 1 cut(s) 275
AluBI AGCT 6 cut(s) 93, 343, 494, 610, 686, 713
AluI AGCT 6 cut(s) 93, 343, 494, 610, 686, 713
Alw26I GTCTC 2 cut(s) 547, 630
AlwI GGATC 2 cut(s) 542, 593
AlwNI CAGNNNCTG 3 cut(s) 159, 212, 314
AoxI GGCC 5 cut(s) 9, 541, 631, 670, 705
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 528
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 3 cut(s) 223, 311, 608
BbsI GAAGAC 2 cut(s) 196, 729
BbvI GCAGC 1 cut(s) 712
BceAI ACGGC 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 547, 630
BfmI CTRYAG 1 cut(s) 315
BglII AGATCT 1 cut(s) 752
BisI GCNGC 4 cut(s) 238, 264, 544, 726
BlsI GCNGC 4 cut(s) 239, 265, 545, 727
BmgBI CACGTC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 2 cut(s) 214, 607
BpiI GAAGAC 2 cut(s) 196, 729
BpuEI CTTGAG 1 cut(s) 554
BsaI GGTCTC 1 cut(s) 547
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bse118I RCCGGY 1 cut(s) 233
BseGI GGATG 2 cut(s) 229, 717
BseMII CTCAG 2 cut(s) 166, 701
BseXI GCAGC 1 cut(s) 712
BsgI GTGCAG 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 5 cut(s) 11, 543, 633, 672, 707
BsiSI CCGG 1 cut(s) 234
BsmAI GTCTC 2 cut(s) 547, 630
BsnI GGCC 5 cut(s) 11, 543, 633, 672, 707
Bso31I GGTCTC 1 cut(s) 547
Bsp143I GATC 4 cut(s) 346, 547, 598, 752
BspACI CCGC 3 cut(s) 237, 264, 544
BspANI GGCC 5 cut(s) 11, 543, 633, 672, 707
BspCNI CTCAG 2 cut(s) 165, 700
BspFNI CGCG 1 cut(s) 546
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 2 cut(s) 542, 593
BspTNI GGTCTC 1 cut(s) 547
BsrFI RCCGGY 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 233
BssMI GATC 4 cut(s) 346, 547, 598, 752
Bst4CI ACNGT 7 cut(s) 112, 174, 195, 528, 593, 641, 791
BstC8I GCNNGC 2 cut(s) 612, 670
BstDEI CTNAG 2 cut(s) 152, 687
BstF5I GGATG 2 cut(s) 229, 717
BstFNI CGCG 1 cut(s) 546
BstKTI GATC 4 cut(s) 349, 550, 601, 755
BstMAI GTCTC 2 cut(s) 547, 630
BstMBI GATC 4 cut(s) 346, 547, 598, 752
BstMWI GCNNNNNNNGC 3 cut(s) 263, 379, 776
BstNSI RCATGY 1 cut(s) 583
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 1 cut(s) 712
BstV2I GAAGAC 2 cut(s) 196, 729
BstX2I RGATCY 1 cut(s) 752
BstYI RGATCY 1 cut(s) 752
BsuRI GGCC 5 cut(s) 11, 543, 633, 672, 707
BtrI CACGTC 1 cut(s) 275
BtsCI GGATG 2 cut(s) 229, 717
BtsIMutI CAGTG 2 cut(s) 646, 787
Cac8I GCNNGC 2 cut(s) 612, 670
CaiI CAGNNNCTG 3 cut(s) 159, 212, 314
CciI TCATGA 1 cut(s) 561
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 10
CviAII CATG 4 cut(s) 37, 562, 580, 766
DdeI CTNAG 2 cut(s) 152, 687
DpnI GATC 4 cut(s) 348, 549, 600, 754
DpnII GATC 4 cut(s) 346, 547, 598, 752
DraI TTTAAA 2 cut(s) 586, 625
EaeI YGGCCR 2 cut(s) 541, 631
Eco31I GGTCTC 1 cut(s) 547
Eco57I CTGAAG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 622
FaeI CATG 4 cut(s) 40, 565, 583, 769
FatI CATG 4 cut(s) 36, 561, 579, 765
Fnu4HI GCNGC 4 cut(s) 238, 264, 544, 726
FokI GGATG 2 cut(s) 236, 704
Fsp4HI GCNGC 4 cut(s) 238, 264, 544, 726
GluI GCNGC 4 cut(s) 238, 264, 544, 726
HaeIII GGCC 5 cut(s) 11, 543, 633, 672, 707
HapII CCGG 1 cut(s) 234
Hin1II CATG 4 cut(s) 40, 565, 583, 769
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 4 cut(s) 156, 448, 467, 809
HpaII CCGG 1 cut(s) 234
HphI GGTGA 3 cut(s) 223, 311, 608
Hpy166II GTNNAC 1 cut(s) 787
Hpy188I TCNGA 7 cut(s) 155, 272, 431, 552, 690, 757, 814
Hpy188III TCNNGA 4 cut(s) 398, 533, 562, 602
Hpy8I GTNNAC 1 cut(s) 787
Hpy99I CGWCG 3 cut(s) 276, 354, 704
HpyAV CCTTC 3 cut(s) 209, 213, 407
HpyCH4III ACNGT 7 cut(s) 112, 174, 195, 528, 593, 641, 791
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 4 cut(s) 162, 308, 620, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 379, 776
HpyF3I CTNAG 2 cut(s) 152, 687
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 4 cut(s) 40, 565, 583, 769
Kzo9I GATC 4 cut(s) 346, 547, 598, 752
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 2 cut(s) 214, 607
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 2 cut(s) 112, 384
MalI GATC 4 cut(s) 348, 549, 600, 754
MboI GATC 4 cut(s) 346, 547, 598, 752
MboII GAAGA 3 cut(s) 201, 422, 729
MflI RGATCY 1 cut(s) 752
MluCI AATT 4 cut(s) 123, 323, 497, 802
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 6 cut(s) 29, 73, 151, 457, 529, 697
Mph1103I ATGCAT 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 528
MseI TTAA 4 cut(s) 44, 510, 585, 624
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 3 cut(s) 263, 379, 776
NdeII GATC 4 cut(s) 346, 547, 598, 752
NlaIII CATG 4 cut(s) 40, 565, 583, 769
NlaIV GGNNCC 1 cut(s) 12
NmeAIII GCCGAG 1 cut(s) 659
NmuCI GTSAC 2 cut(s) 112, 384
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 1 cut(s) 583
PagI TCATGA 1 cut(s) 561
PciI ACATGT 1 cut(s) 579
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 4 cut(s) 156, 448, 467, 809
PkrI GCNGC 4 cut(s) 239, 265, 545, 727
PscI ACATGT 1 cut(s) 579
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 10
PstNI CAGNNNCTG 3 cut(s) 159, 212, 314
PsuI RGATCY 1 cut(s) 752
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 4 cut(s) 44, 510, 585, 624
SatI GCNGC 4 cut(s) 238, 264, 544, 726
Sau3AI GATC 4 cut(s) 346, 547, 598, 752
Sau96I GGNCC 1 cut(s) 10
SfaNI GCATC 2 cut(s) 214, 607
SfcI CTRYAG 1 cut(s) 315
SgrAI CRCCGGYG 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 4 cut(s) 123, 323, 497, 802
SsiI CCGC 3 cut(s) 237, 264, 544
TaaI ACNGT 7 cut(s) 112, 174, 195, 528, 593, 641, 791
TaiI ACGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 799
TasI AATT 4 cut(s) 123, 323, 497, 802
TauI GCSGC 3 cut(s) 240, 266, 546
TfiI GAWTC 4 cut(s) 156, 448, 467, 809
Tru1I TTAA 4 cut(s) 44, 510, 585, 624
Tru9I TTAA 4 cut(s) 44, 510, 585, 624
TscAI CASTG 2 cut(s) 646, 794
TseFI GTSAC 2 cut(s) 112, 384
TseI GCWGC 1 cut(s) 725
Tsp45I GTSAC 2 cut(s) 112, 384
TspDTI ATGAA 2 cut(s) 63, 696
TspRI CASTG 2 cut(s) 646, 794
XapI RAATTY 1 cut(s) 323
XceI RCATGY 1 cut(s) 583
XmnI GAANNNNTTC 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.