Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007367

Physical Location & Seq

Genomic Coordinates Reverse (-)

28240478 .. 28243407

Gene Structure 2930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G318000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTATGCCCCAAAACCTCAAACCCACTATCACATCATTCCTAACCTCCCCTTCAGTTTCATTCAAAACCCAGAACAGCTCACTCTTCTTTGACACAATTACTTCAACAAGTGACAACTACAGAACCCAGCCACCACCATTTTCATTTAAAACTCGCACTAACTCACAATTCTTCAGCACCAGAAGACTGTTCCTCCCTTCAGTTTCTGGCATCTGGGATGCCTTAACTAGCGGTAACAATGCCCGTGAAGCCGTTGCCGCTATTCGACATGGAATGGTACTCTTTAGACAGGGTGATGTTTCAGGGTCTGTAGCAGAATTTGATAAGGCAATTGAGTTGGATCCTCGCCAACAGGCATATCTTTGGCAAAGGGGGCTATCGCTTTACTATCTTGATAGGTTTGAAGAAGGGGCAGAGCAGTTCCGATTAGATGTTGCCCAGAATCCAAATGATACAGAGGAGTCCATTTGGTGCTTTCTTTGTGAAGCTCAATTATATGGGACTAGTGAAGCAAGGGAACGATTTCTTGAGGTTGGCCAAGATCCAAGACCTGTTATGCGAGACGCCTATAACATGTTTAAAGATGGTGGTGATCCAGAAAAGCTTGTTGCGGCATTTTCGAAAGGCCGAGAGAGTGATTACTTCTACGCTTCTTTATATGCTGGGCTTTATTTTGAAAGTCAGAAGAAAACTGATGCCGCCGAACTTCATATCGTTGCTGCGTATCAGTCTCCTTATGGACAAAGATCTGATGACTACATGGCTTCTCTAGCCAAAGTTCATTGTCTTTGTCGAAAGTGGAGTTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.82

Weight (kDa)

5.52

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05625 AT3G05625
fragaria_vesca	FvH4_6g06920 FvH4_6g06920
malus_domestica	MD04G1197600.v1.1
prunus_persica	Prupe.6G318000_v2.0.a1 Prupe.6G318000_v2.0.a1
pyrus_communis	pycom04g17490
rosa_chinensis	RchiOBHm_Chr1g0332671 RchiOBHm_Chr3g0456451
rosa_laevigata	RLG00000025304
rosa_multiflora	Rmu_sc0002607.1_g000017
rosa_roxburghii	Rroxscaffold_6G00422740
rosa_rugosa	Rorug02G0219500 Rorug03G0012800 Rorug03G0012900 Rorug03G0013000 Rorug03G0013100
rosa_samantha	Rh1DG132400 Rh3AG073500 Rh3BG075400 Rh3CG074900 Rh3DG076700
rosa_wichuraiana	Rw0G012240 Rw3G006300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	234, 261, 614, 702
AclWI	GGATC	4 cut(s)	338, 351, 539, 590
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	3 cut(s)	39, 160, 186
AcyI	GRCGYC	1 cut(s)	567
AfaI	GTAC	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	5 cut(s)	67, 108, 407, 680, 811
AhlI	ACTAGT	1 cut(s)	506
AluBI	AGCT	3 cut(s)	81, 491, 607
AluI	AGCT	3 cut(s)	81, 491, 607
Alw26I	GTCTC	2 cut(s)	558, 738
AlwI	GGATC	4 cut(s)	338, 351, 539, 590
AlwNI	CAGNNNCTG	2 cut(s)	209, 311
AoxI	GGCC	2 cut(s)	538, 628
ApeKI	GCWGC	1 cut(s)	722
ApoI	RAATTY	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	525
AsuHPI	GGTGA	2 cut(s)	308, 605
AsuII	TTCGAA	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	540
BamHI	GGATCC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	1 cut(s)	581
BceAI	ACGGC	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	558, 738
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	3 cut(s)	231, 507, 773
BfmI	CTRYAG	2 cut(s)	121, 312
BglII	AGATCT	1 cut(s)	749
BisI	GCNGC	4 cut(s)	261, 615, 702, 723
BlsI	GCNGC	4 cut(s)	262, 616, 703, 724
BmiI	GGNNCC	1 cut(s)	345
BmsI	GCATC	3 cut(s)	211, 222, 688
BpiI	GAAGAC	1 cut(s)	193
Bpu14I	TTCGAA	1 cut(s)	623
BpuEI	CTTGAG	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
BseGI	GGATG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	1 cut(s)	709
BseYI	CCCAGC	2 cut(s)	129, 665
BshFI	GGCC	2 cut(s)	540, 630
BslFI	GGGAC	1 cut(s)	517
BsmAI	GTCTC	2 cut(s)	558, 738
BsmBI	CGTCTC	1 cut(s)	558
BsmFI	GGGAC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	540, 630
Bsp119I	TTCGAA	1 cut(s)	623
Bsp143I	GATC	4 cut(s)	343, 544, 595, 749
BspACI	CCGC	4 cut(s)	234, 261, 614, 702
BspANI	GGCC	2 cut(s)	540, 630
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	4 cut(s)	338, 351, 539, 590
BspT104I	TTCGAA	1 cut(s)	623
BssMI	GATC	4 cut(s)	343, 544, 595, 749
BssNI	GRCGYC	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	567
BstBI	TTCGAA	1 cut(s)	623
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	4 cut(s)	346, 547, 598, 752
BstMAI	GTCTC	2 cut(s)	558, 738
BstMBI	GATC	4 cut(s)	343, 544, 595, 749
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 260, 376, 773
BstNSI	RCATGY	1 cut(s)	580
BstSFI	CTRYAG	2 cut(s)	121, 312
BstV1I	GCAGC	1 cut(s)	709
BstV2I	GAAGAC	1 cut(s)	193
BstX2I	RGATCY	3 cut(s)	343, 544, 749
BstYI	RGATCY	3 cut(s)	343, 544, 749
BsuRI	GGCC	2 cut(s)	540, 630
BtsCI	GGATG	1 cut(s)	226
CaiI	CAGNNNCTG	2 cut(s)	209, 311
CseI	GACGC	1 cut(s)	575
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	3 cut(s)	272, 577, 763
CviQI	GTAC	1 cut(s)	281
DpnI	GATC	4 cut(s)	345, 546, 597, 751
DpnII	GATC	4 cut(s)	343, 544, 595, 749
DraI	TTTAAA	2 cut(s)	151, 583
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco57I	CTGAAG	3 cut(s)	39, 160, 186
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	3 cut(s)	275, 580, 766
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	3 cut(s)	271, 576, 762
Fnu4HI	GCNGC	4 cut(s)	261, 615, 702, 723
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	4 cut(s)	261, 615, 702, 723
FspBI	CTAG	3 cut(s)	231, 507, 773
GluI	GCNGC	4 cut(s)	261, 615, 702, 723
GsaI	CCCAGC	2 cut(s)	133, 669
HaeIII	GGCC	2 cut(s)	540, 630
HgaI	GACGC	1 cut(s)	575
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	3 cut(s)	275, 580, 766
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	2 cut(s)	445, 464
HphI	GGTGA	2 cut(s)	308, 605
Hpy188I	TCNGA	3 cut(s)	428, 687, 754
Hpy188III	TCNNGA	3 cut(s)	395, 530, 599
HpyAV	CCTTC	3 cut(s)	63, 210, 404
HpyCH4III	ACNGT	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 260, 376, 773
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	3 cut(s)	275, 580, 766
Kzo9I	GATC	4 cut(s)	343, 544, 595, 749
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	3 cut(s)	211, 222, 688
MaeI	CTAG	3 cut(s)	231, 507, 773
MaeIII	GTNAC	2 cut(s)	113, 236
MalI	GATC	4 cut(s)	345, 546, 597, 751
MboI	GATC	4 cut(s)	343, 544, 595, 749
MboII	GAAGA	5 cut(s)	79, 166, 198, 419, 700
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	3 cut(s)	343, 544, 749
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	6 cut(s)	99, 170, 320, 333, 494, 811
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	6 cut(s)	29, 58, 206, 357, 454, 526
Mox20I	TGGCCA	1 cut(s)	540
MroXI	GAANNNNTTC	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	3 cut(s)	150, 227, 582
Msp20I	TGGCCA	1 cut(s)	540
MunI	CAATTG	1 cut(s)	333
MwoI	GCNNNNNNNGC	4 cut(s)	251, 260, 376, 773
NdeII	GATC	4 cut(s)	343, 544, 595, 749
NlaIII	CATG	3 cut(s)	275, 580, 766
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	656
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	580
NspV	TTCGAA	1 cut(s)	623
PciI	ACATGT	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	445
PkrI	GCNGC	4 cut(s)	262, 616, 703, 724
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PscI	ACATGT	1 cut(s)	576
PspFI	CCCAGC	2 cut(s)	129, 665
PspN4I	GGNNCC	1 cut(s)	345
PstNI	CAGNNNCTG	2 cut(s)	209, 311
PsuI	RGATCY	3 cut(s)	343, 544, 749
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	150, 227, 582
SatI	GCNGC	4 cut(s)	261, 615, 702, 723
Sau3AI	GATC	4 cut(s)	343, 544, 595, 749
SchI	GAGTC	1 cut(s)	473
SetI	ASST	8 cut(s)	21, 50, 83, 404, 493, 537, 556, 609
SfaNI	GCATC	3 cut(s)	211, 222, 688
SfcI	CTRYAG	2 cut(s)	121, 312
SfuI	TTCGAA	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	6 cut(s)	99, 170, 320, 333, 494, 811
SsiI	CCGC	4 cut(s)	234, 261, 614, 702
SspMI	CTAG	3 cut(s)	231, 507, 773
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	268, 623, 796
TasI	AATT	6 cut(s)	99, 170, 320, 333, 494, 811
TauI	GCSGC	3 cut(s)	263, 617, 704
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	3 cut(s)	150, 227, 582
Tru9I	TTAA	3 cut(s)	150, 227, 582
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	4 cut(s)	51, 135, 701, 773
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	3 cut(s)	231, 507, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.