Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007367

Physical Location & Seq

Genomic Coordinates Reverse (-)

43764824 .. 43767345

Gene Structure 2522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025304

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTATTGCTCCCAACCTCAAACCCACCATTTCCATGTCCCTCACTCGATTCCTAACCTCTCCTCCTTTTTCACTCAAAACCCAGAACAGCTCACTATTCTTTAACACAATCCCTTCAACAATTCAGACACATAAAACCTCATTTCCACTGAGAACCTGCACTAACTCTCAATTCTTTAGCACCAGAAGACTGTTCCTTCCCTCAGTTTCTGGCATCTGGGATGCCATCACCGGAGGCAACAATCCCCGTGAAGCCGTTGCCGCAATCCGAGGTGGAATGGTTCTGTTTAGACAGGGTGATGTTGCAGGGTCTGTAGCAGAATTTGACAAGGCAATTGAGCTTGATCCTCGCCAAAAGATCTTTGGCAAAGGGGGCTGTCACTTTACTATCTTGATAGGTACTACTAGTTCTTTGATGGGTCTCTTTCCATATCTTGCTGATGCATTTAAAAATGGCCGAGACAGTGATTATTTCTACGCTTCTCTATATGCTGGCCTTTACTATGAAGCTCAGAAGAAACTGAATGAGGCCAAAGTTCACATCCTTGCTGCTTATCAGTCTTCCTATGGACAAAGTTCTGATGATTACATGGCCTCTCTTGCCAAAGTCCACTGTGTTTGTCGAAATTGGAGATCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.66

Weight (kDa)

9.3

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05625 AT3G05625
fragaria_vesca	FvH4_6g06920 FvH4_6g06920
malus_domestica	MD04G1197600.v1.1
prunus_persica	Prupe.6G318000_v2.0.a1 Prupe.6G318000_v2.0.a1
pyrus_communis	pycom04g17490
rosa_chinensis	RchiOBHm_Chr1g0332671 RchiOBHm_Chr3g0456451
rosa_laevigata	RLG00000025304
rosa_multiflora	Rmu_sc0002607.1_g000017
rosa_roxburghii	Rroxscaffold_6G00422740
rosa_rugosa	Rorug02G0219500 Rorug03G0012800 Rorug03G0012900 Rorug03G0013000 Rorug03G0013100
rosa_samantha	Rh1DG132400 Rh3AG073500 Rh3BG075400 Rh3CG074900 Rh3DG076700
rosa_wichuraiana	Rw0G012240 Rw3G006300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	323
AfaI	GTAC	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	120
AhlI	ACTAGT	1 cut(s)	407
AluBI	AGCT	3 cut(s)	93, 343, 512
AluI	AGCT	3 cut(s)	93, 343, 512
Alw26I	GTCTC	2 cut(s)	428, 456
AlwI	GGATC	1 cut(s)	341
AlwNI	CAGNNNCTG	2 cut(s)	212, 314
AoxI	GGCC	4 cut(s)	457, 496, 531, 594
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	223, 311
BbsI	GAAGAC	2 cut(s)	196, 555
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	2 cut(s)	236, 412
BceAI	ACGGC	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	428, 456
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	167
BglII	AGATCT	2 cut(s)	360, 635
BisI	GCNGC	2 cut(s)	264, 552
BlsI	GCNGC	2 cut(s)	265, 553
BmsI	GCATC	3 cut(s)	214, 225, 433
BpiI	GAAGAC	2 cut(s)	196, 555
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	229, 543
BseMII	CTCAG	3 cut(s)	143, 219, 527
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	538
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	4 cut(s)	459, 498, 533, 596
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	25
BsmAI	GTCTC	2 cut(s)	428, 456
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	4 cut(s)	459, 498, 533, 596
Bso31I	GGTCTC	1 cut(s)	428
Bsp143I	GATC	3 cut(s)	346, 360, 635
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	4 cut(s)	459, 498, 533, 596
BspCNI	CTCAG	3 cut(s)	144, 218, 526
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	3 cut(s)	346, 360, 635
Bst4CI	ACNGT	3 cut(s)	195, 467, 617
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	3 cut(s)	152, 205, 513
BstF5I	GGATG	2 cut(s)	229, 543
BstKTI	GATC	3 cut(s)	349, 363, 638
BstMAI	GTCTC	2 cut(s)	428, 456
BstMBI	GATC	3 cut(s)	346, 360, 635
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 375, 602
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	538
BstV2I	GAAGAC	2 cut(s)	196, 555
BstX2I	RGATCY	2 cut(s)	360, 635
BstYI	RGATCY	2 cut(s)	360, 635
BsuRI	GGCC	4 cut(s)	459, 498, 533, 596
BtsCI	GGATG	2 cut(s)	229, 543
BtsIMutI	CAGTG	3 cut(s)	149, 472, 613
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	496
CaiI	CAGNNNCTG	2 cut(s)	212, 314
Csp6I	GTAC	1 cut(s)	402
CspCI	CAANNNNNGTGG	2 cut(s)	602, 637
CviAII	CATG	2 cut(s)	37, 592
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	3 cut(s)	152, 205, 513
DpnI	GATC	3 cut(s)	348, 362, 637
DpnII	GATC	3 cut(s)	346, 360, 635
DraI	TTTAAA	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	428
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	2 cut(s)	40, 595
FaiI	YATR	8 cut(s)	38, 135, 433, 490, 492, 507, 570, 593
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	36, 591
Fnu4HI	GCNGC	2 cut(s)	264, 552
FokI	GGATG	2 cut(s)	236, 530
Fsp4HI	GCNGC	2 cut(s)	264, 552
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	2 cut(s)	264, 552
HaeIII	GGCC	4 cut(s)	459, 498, 533, 596
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	2 cut(s)	40, 595
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	2 cut(s)	223, 311
Hpy166II	GTNNAC	2 cut(s)	541, 613
Hpy188I	TCNGA	5 cut(s)	129, 272, 516, 583, 640
Hpy188III	TCNNGA	1 cut(s)	394
Hpy8I	GTNNAC	2 cut(s)	541, 613
HpyAV	CCTTC	2 cut(s)	126, 209
HpyCH4III	ACNGT	3 cut(s)	195, 467, 617
HpyCH4V	TGCA	3 cut(s)	162, 308, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 375, 602
HpyF3I	CTNAG	3 cut(s)	152, 205, 513
Hsp92II	CATG	2 cut(s)	40, 595
Kzo9I	GATC	3 cut(s)	346, 360, 635
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	9 cut(s)	98, 172, 198, 199, 205, 247, 281, 294, 480
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	3 cut(s)	214, 225, 433
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	3 cut(s)	348, 362, 637
MboI	GATC	3 cut(s)	346, 360, 635
MboII	GAAGA	3 cut(s)	201, 529, 555
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	2 cut(s)	360, 635
MluCI	AATT	5 cut(s)	123, 173, 323, 336, 628
Mph1103I	ATGCAT	1 cut(s)	448
MseI	TTAA	2 cut(s)	105, 450
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	263, 375, 602
NdeII	GATC	3 cut(s)	346, 360, 635
NlaIII	CATG	2 cut(s)	40, 595
NmeAIII	GCCGAG	1 cut(s)	485
NmuCI	GTSAC	1 cut(s)	380
NsiI	ATGCAT	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	265, 553
PsrI	GAACNNNNNNTAC	2 cut(s)	394, 426
PstNI	CAGNNNCTG	2 cut(s)	212, 314
PsuI	RGATCY	2 cut(s)	360, 635
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	105, 450
SatI	GCNGC	2 cut(s)	264, 552
Sau3AI	GATC	3 cut(s)	346, 360, 635
SetI	ASST	9 cut(s)	21, 62, 95, 143, 161, 277, 345, 403, 514
SfaNI	GCATC	3 cut(s)	214, 225, 433
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	35
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	5 cut(s)	123, 173, 323, 336, 628
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	195, 467, 617
TaqI	TCGA	2 cut(s)	49, 625
TasI	AATT	5 cut(s)	123, 173, 323, 336, 628
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	2 cut(s)	105, 450
Tru9I	TTAA	2 cut(s)	105, 450
TscAI	CASTG	3 cut(s)	156, 472, 620
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	522
TspRI	CASTG	3 cut(s)	156, 472, 620
XapI	RAATTY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.