Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00549

Orthogroup ID

OG0007367

Physical Location & Seq

Genomic Coordinates Forward (+)

26082 .. 46877

Gene Structure 20796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTGGTGATTGGAGCACCGCCATCGATGGTGTTGATGCGGCCCAAGGTCTCAACGTTGGCAATCACTGGTGGTGGTTGGCGCACCTTGAACTGCTCCAACTTGCCGTCACGGTACAAAGTCTCAATGGCTGTTTTGAGAGCATTGCAGCTCCATGGTGATTGTAGTGGGATGACCTTTAATCTTTGGCAAAGGGGGCTGTCACTTTACTATCTTGATAGATTTGAAGAAGGGACAGAGCAGTTCCGAATAGATGTTGCCCAGAATCCAAATGATACAGAGGAGTCCATTTGGTGCTTTCTCTGTGAAGCTCAATTATATGGAGTAAAGGAAGCAAGGGAACGGTTTCTTGAGGTTGGCCGAGATCCAAGACCTGTCATGAGAGAAGTCTATAACATGTTTAAAGATGGTGGTGATTCAGAAAAGCTTGCTGATGCATTTAAAAATGGCCGAGACAGTGATTATTTCTACTCTTCTCTATATGCTGGCCTTTACTATGAAGCTCAGAAGAAACCGGATGAGGCCAAAGTTCACATCCTTGCTGCTTATCAGTCTTCCTATGGACAAAGATCTGATGATTACATGGCCTCTCTTGCCAAAGTTCATTGTGTTTGTCGAAATTGGATATCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

24.08

Weight (kDa)

5.97

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05625 AT3G05625
fragaria_vesca	FvH4_6g06920 FvH4_6g06920
malus_domestica	MD04G1197600.v1.1
prunus_persica	Prupe.6G318000_v2.0.a1 Prupe.6G318000_v2.0.a1
pyrus_communis	pycom04g17490
rosa_chinensis	RchiOBHm_Chr1g0332671 RchiOBHm_Chr3g0456451
rosa_laevigata	RLG00000025304
rosa_multiflora	Rmu_sc0002607.1_g000017
rosa_roxburghii	Rroxscaffold_6G00422740
rosa_rugosa	Rorug02G0219500 Rorug03G0012800 Rorug03G0012900 Rorug03G0013000 Rorug03G0013100
rosa_samantha	Rh1DG132400 Rh3AG073500 Rh3BG075400 Rh3CG074900 Rh3DG076700
rosa_wichuraiana	Rw0G012240 Rw3G006300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	20, 40
AclI	AACGTT	1 cut(s)	56
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	2 cut(s)	358, 448
AfaI	GTAC	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	91, 227
AluBI	AGCT	4 cut(s)	151, 311, 427, 503
AluI	AGCT	4 cut(s)	151, 311, 427, 503
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	3 cut(s)	55, 127, 447
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	6 cut(s)	41, 358, 448, 487, 522, 585
ApeKI	GCWGC	2 cut(s)	148, 542
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	3 cut(s)	19, 170, 425
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	160, 529
BccI	CCATC	3 cut(s)	22, 31, 401
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BcoDI	GTCTC	3 cut(s)	55, 127, 447
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	3 cut(s)	41, 149, 543
BlsI	GCNGC	3 cut(s)	42, 150, 544
BmgT120I	GGNCC	1 cut(s)	42
BmsI	GCATC	2 cut(s)	27, 424
BpiI	GAAGAC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	45, 154
BsaWI	WCCGGW	1 cut(s)	514
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	143
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	45, 154
BseGI	GGATG	3 cut(s)	177, 523, 534
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	160, 529
BshFI	GGCC	6 cut(s)	43, 360, 450, 489, 524, 587
BshVI	ATCGAT	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	515
BslFI	GGGAC	1 cut(s)	247
BsmAI	GTCTC	3 cut(s)	55, 127, 447
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	6 cut(s)	43, 360, 450, 489, 524, 587
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	364, 569
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	2 cut(s)	20, 40
BspANI	GGCC	6 cut(s)	43, 360, 450, 489, 524, 587
BspCNI	CTCAG	1 cut(s)	517
BspDI	ATCGAT	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	378
BspPI	GGATC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	45, 154
BssMI	GATC	2 cut(s)	364, 569
BssT1I	CCWWGG	2 cut(s)	45, 154
Bst4CI	ACNGT	3 cut(s)	114, 345, 458
Bst6I	CTCTTC	1 cut(s)	478
BstC8I	GCNNGC	2 cut(s)	429, 487
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	3 cut(s)	177, 523, 534
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	367, 572
BstMAI	GTCTC	3 cut(s)	55, 127, 447
BstMBI	GATC	2 cut(s)	364, 569
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 593
BstNSI	RCATGY	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	160, 529
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	2 cut(s)	364, 569
BstYI	RGATCY	2 cut(s)	364, 569
Bsu15I	ATCGAT	1 cut(s)	26
BsuRI	GGCC	6 cut(s)	43, 360, 450, 489, 524, 587
BsuTUI	ATCGAT	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	177, 523, 534
BtsIMutI	CAGTG	2 cut(s)	66, 463
Cac8I	GCNNGC	2 cut(s)	429, 487
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	42
ClaI	ATCGAT	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	4 cut(s)	155, 379, 397, 583
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	2 cut(s)	366, 571
DpnII	GATC	2 cut(s)	364, 569
DraI	TTTAAA	2 cut(s)	403, 442
EaeI	YGGCCR	2 cut(s)	358, 448
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco130I	CCWWGG	2 cut(s)	45, 154
Eco31I	GGTCTC	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	627
EcoRV	GATATC	1 cut(s)	627
EcoT14I	CCWWGG	2 cut(s)	45, 154
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	2 cut(s)	45, 154
FaeI	CATG	4 cut(s)	158, 382, 400, 586
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	4 cut(s)	154, 378, 396, 582
Fnu4HI	GCNGC	3 cut(s)	41, 149, 543
FokI	GGATG	3 cut(s)	184, 521, 530
Fsp4HI	GCNGC	3 cut(s)	41, 149, 543
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	3 cut(s)	41, 149, 543
HaeIII	GGCC	6 cut(s)	43, 360, 450, 489, 524, 587
HapII	CCGG	1 cut(s)	515
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	158, 382, 400, 586
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	3 cut(s)	265, 284, 416
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	3 cut(s)	19, 170, 425
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	5 cut(s)	248, 421, 507, 574, 631
Hpy188III	TCNNGA	3 cut(s)	215, 350, 379
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	3 cut(s)	114, 345, 458
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	148, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 593
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	4 cut(s)	158, 382, 400, 586
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	364, 569
LmnI	GCTCC	3 cut(s)	14, 101, 156
LpnPI	CCDG	5 cut(s)	54, 275, 387, 471, 528
Lsp1109I	GCAGC	2 cut(s)	160, 529
LweI	GCATC	2 cut(s)	27, 424
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	108, 201
MalI	GATC	2 cut(s)	366, 571
MboI	GATC	2 cut(s)	364, 569
MboII	GAAGA	4 cut(s)	239, 465, 520, 546
MflI	RGATCY	2 cut(s)	364, 569
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	2 cut(s)	314, 619
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	4 cut(s)	274, 346, 514, 598
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	3 cut(s)	180, 402, 441
MspI	CCGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	2 cut(s)	196, 593
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	364, 569
NlaIII	CATG	4 cut(s)	158, 382, 400, 586
NmeAIII	GCCGAG	2 cut(s)	386, 476
NmuCI	GTSAC	2 cut(s)	108, 201
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	400
PagI	TCATGA	1 cut(s)	378
PciI	ACATGT	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	265, 416
PkrI	GCNGC	3 cut(s)	42, 150, 544
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PscI	ACATGT	1 cut(s)	396
Psp1406I	AACGTT	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	42
PsuI	RGATCY	2 cut(s)	364, 569
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	3 cut(s)	180, 402, 441
SatI	GCNGC	3 cut(s)	41, 149, 543
Sau3AI	GATC	2 cut(s)	364, 569
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	2 cut(s)	27, 424
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	314, 619
SsiI	CCGC	2 cut(s)	20, 40
StyI	CCWWGG	2 cut(s)	45, 154
TaaI	ACNGT	3 cut(s)	114, 345, 458
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	26, 616
TasI	AATT	2 cut(s)	314, 619
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	265, 416
Tru1I	TTAA	3 cut(s)	180, 402, 441
Tru9I	TTAA	3 cut(s)	180, 402, 441
TscAI	CASTG	2 cut(s)	73, 463
TseFI	GTSAC	2 cut(s)	108, 201
TseI	GCWGC	2 cut(s)	148, 542
Tsp45I	GTSAC	2 cut(s)	108, 201
TspDTI	ATGAA	2 cut(s)	513, 593
TspRI	CASTG	2 cut(s)	73, 463
XceI	RCATGY	1 cut(s)	400
XmnI	GAANNNNTTC	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.