Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007367

Physical Location & Seq

Genomic Coordinates Reverse (-)

43545528 .. 43560645

Gene Structure 15118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCCCTCACTCCATTCCTAACCTCCCCTCCAATTTCACTCAAAACCCAGAACAGCTCACTATTCTTTAACACAATCCCGTCAACAATTCACACAAACAGAACCTCATTTCCACTCAGAATCTGCACTAACTCTCAATTCTTTAGCACCAGAAGACTGTTCCTTCCCTCAGTTTCTGGCATCTGGGATGCCATCACCGGCGGCAACAATCCCCGTGAAGCCGTTGCCGCTATCCGTGGTGGAATGGTTCTGTTTAGACAGGGTGATGTTGCAGGGTCTGTAGCAGAATTTGACAAGGCAATTGAGCTTGATCCTCGCCAAAAGGCATATCTTTGGCAAAGGGGGCTGTCACTTTACTATCTTGATAGATTTGAAGAAGGGGCAGAGCAGTTCCGAATAGATGTTGCCCAGAATCCAAATGATACAGAGGAGTCCATTTGGTGCTTTCTCTGTGAAGCTCAATTATATGGAGTTAAGGAAGCAAGGGAACGGTTTCTTGAGGCAAAAAGGTCACCGAAGATTCACATCCTTGCTGCTTATCATTGTTTCATCATGGGCGGTCCCAGCCAGGAGCAGGTTACTTTGTACTCTGACCAAACTGCCCTTTTTGTATACCATAGTATTTACGTCCCGGTTTATCAACAAAGACAGAGAAAGGATATACCGGAAATGTGTGTGCTTCCTCCTTGTGCAAGCTTTCATGAGAGTAGGACTCCTTTGTACAAGAAATTTCTTGCCCAAAGGCATGCCAATCTGCGGAGTTGGCCGAGATCAACAACTGGTCATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

30.05

Weight (kDa)

8.89

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05625 AT3G05625
fragaria_vesca	FvH4_6g06920 FvH4_6g06920
malus_domestica	MD04G1197600.v1.1
prunus_persica	Prupe.6G318000_v2.0.a1 Prupe.6G318000_v2.0.a1
pyrus_communis	pycom04g17490
rosa_chinensis	RchiOBHm_Chr1g0332671 RchiOBHm_Chr3g0456451
rosa_laevigata	RLG00000025304
rosa_multiflora	Rmu_sc0002607.1_g000017
rosa_roxburghii	Rroxscaffold_6G00422740
rosa_rugosa	Rorug02G0219500 Rorug03G0012800 Rorug03G0012900 Rorug03G0013000 Rorug03G0013100
rosa_samantha	Rh1DG132400 Rh3AG073500 Rh3BG075400 Rh3CG074900 Rh3DG076700
rosa_wichuraiana	Rw0G012240 Rw3G006300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	612
AciI	CCGC	4 cut(s)	201, 228, 558, 757
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	764
AcsI	RAATTY	2 cut(s)	287, 728
AfaI	GTAC	2 cut(s)	587, 722
AfiI	CCNNNNNNNGG	2 cut(s)	574, 756
AgsI	TTSAA	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	567
AloI	GAACNNNNNNTCC	2 cut(s)	94, 126
AluBI	AGCT	4 cut(s)	57, 307, 458, 696
AluI	AGCT	4 cut(s)	57, 307, 458, 696
AlwI	GGATC	1 cut(s)	305
AlwNI	CAGNNNCTG	3 cut(s)	123, 176, 278
AoxI	GGCC	1 cut(s)	764
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	2 cut(s)	287, 728
Asp700I	GAANNNNTTC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	632
AsuHPI	GGTGA	3 cut(s)	187, 275, 504
AvaII	GGWCC	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	569
BcnI	CCSGG	1 cut(s)	632
BfmI	CTRYAG	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	565
BisI	GCNGC	3 cut(s)	202, 228, 534
BlsI	GCNGC	3 cut(s)	203, 229, 535
Bme1390I	CCNGG	2 cut(s)	569, 632
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	2 cut(s)	569, 632
BmsI	GCATC	2 cut(s)	178, 189
BpiI	GAAGAC	1 cut(s)	160
BplI	GAGNNNNNCTC	2 cut(s)	697, 729
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	632
BsaBI	GATNNNNATC	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	1 cut(s)	664
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 756
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	2 cut(s)	193, 525
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	2 cut(s)	574, 756
BseMII	CTCAG	2 cut(s)	130, 183
BseNI	ACTGG	1 cut(s)	784
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	520
BseYI	CCCAGC	1 cut(s)	563
BsgI	GTGCAG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	766
BsiSI	CCGG	3 cut(s)	198, 632, 665
BslFI	GGGAC	2 cut(s)	546, 614
BslI	CCNNNNNNNGG	2 cut(s)	574, 756
BsmFI	GGGAC	2 cut(s)	546, 614
BsnI	GGCC	1 cut(s)	766
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	2 cut(s)	310, 770
BspACI	CCGC	4 cut(s)	201, 228, 558, 757
BspANI	GGCC	1 cut(s)	766
BspCNI	CTCAG	2 cut(s)	129, 182
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	197
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	784
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	2 cut(s)	310, 770
BssNAI	GTATAC	1 cut(s)	613
Bst1107I	GTATAC	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	2 cut(s)	159, 492
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	2 cut(s)	694, 747
BstDEI	CTNAG	2 cut(s)	116, 169
BstDSI	CCRYGG	1 cut(s)	235
BstEII	GGTNACC	1 cut(s)	510
BstF5I	GGATG	2 cut(s)	193, 525
BstKTI	GATC	2 cut(s)	313, 773
BstMBI	GATC	2 cut(s)	310, 770
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 343, 564, 763
BstNI	CCWGG	1 cut(s)	569
BstNSI	RCATGY	1 cut(s)	749
BstPI	GGTNACC	1 cut(s)	510
BstSCI	CCNGG	2 cut(s)	567, 630
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	160
BstZ17I	GTATAC	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	766
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	193, 525
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	694, 747
CaiI	CAGNNNCTG	3 cut(s)	123, 176, 278
CciI	TCATGA	1 cut(s)	700
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	586, 721
CviAII	CATG	3 cut(s)	553, 701, 746
CviJI	RGCY	8 cut(s)	57, 221, 307, 346, 458, 567, 696, 766
CviKI_1	RGCY	8 cut(s)	57, 221, 307, 346, 458, 567, 696, 766
CviQI	GTAC	2 cut(s)	586, 721
DdeI	CTNAG	2 cut(s)	116, 169
DpnI	GATC	2 cut(s)	312, 772
DpnII	GATC	2 cut(s)	310, 770
EaeI	YGGCCR	1 cut(s)	764
Eco47I	GGWCC	1 cut(s)	560
Eco91I	GGTNACC	1 cut(s)	510
EcoO65I	GGTNACC	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	567
FaeI	CATG	3 cut(s)	556, 704, 749
FaqI	GGGAC	2 cut(s)	546, 614
FatI	CATG	3 cut(s)	552, 700, 745
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	3 cut(s)	202, 228, 534
FokI	GGATG	2 cut(s)	200, 512
Fsp4HI	GCNGC	3 cut(s)	202, 228, 534
GluI	GCNGC	3 cut(s)	202, 228, 534
GsaI	CCCAGC	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	766
HapII	CCGG	3 cut(s)	198, 632, 665
Hin1II	CATG	3 cut(s)	556, 704, 749
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	694
HinfI	GANTC	5 cut(s)	120, 412, 431, 520, 712
HpaII	CCGG	3 cut(s)	198, 632, 665
HphI	GGTGA	3 cut(s)	187, 275, 504
Hpy166II	GTNNAC	2 cut(s)	84, 613
Hpy188I	TCNGA	3 cut(s)	119, 395, 592
Hpy188III	TCNNGA	3 cut(s)	362, 497, 701
Hpy8I	GTNNAC	2 cut(s)	84, 613
HpyAV	CCTTC	2 cut(s)	173, 371
HpyCH4III	ACNGT	2 cut(s)	159, 492
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	3 cut(s)	126, 272, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 343, 564, 763
HpyF3I	CTNAG	2 cut(s)	116, 169
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	3 cut(s)	556, 704, 749
Kzo9I	GATC	2 cut(s)	310, 770
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	2 cut(s)	178, 189
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	3 cut(s)	348, 510, 577
MalI	GATC	2 cut(s)	312, 772
MboI	GATC	2 cut(s)	310, 770
MboII	GAAGA	3 cut(s)	165, 386, 529
MfeI	CAATTG	1 cut(s)	300
MluCI	AATT	7 cut(s)	33, 87, 137, 287, 300, 461, 728
MlyI	GAGTC	2 cut(s)	440, 706
MnlI	CCTC	9 cut(s)	17, 34, 39, 115, 178, 324, 421, 493, 693
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	2 cut(s)	69, 474
MspI	CCGG	3 cut(s)	198, 632, 665
MspR9I	CCNGG	2 cut(s)	569, 632
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	4 cut(s)	227, 343, 564, 763
NciI	CCSGG	1 cut(s)	632
NdeII	GATC	2 cut(s)	310, 770
NlaIII	CATG	3 cut(s)	556, 704, 749
NlaIV	GGNNCC	1 cut(s)	562
NmeAIII	GCCGAG	1 cut(s)	792
NmuCI	GTSAC	2 cut(s)	348, 510
NspI	RCATGY	1 cut(s)	749
PaeI	GCATGC	1 cut(s)	749
PagI	TCATGA	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	3 cut(s)	120, 412, 520
PkrI	GCNGC	3 cut(s)	203, 229, 535
PleI	GAGTC	2 cut(s)	439, 706
PpsI	GAGTC	2 cut(s)	439, 706
Psp6I	CCWGG	1 cut(s)	567
PspEI	GGTNACC	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	560
PstNI	CAGNNNCTG	3 cut(s)	123, 176, 278
RsaI	GTAC	2 cut(s)	587, 722
RsaNI	GTAC	2 cut(s)	586, 721
SaqAI	TTAA	2 cut(s)	69, 474
SatI	GCNGC	3 cut(s)	202, 228, 534
Sau3AI	GATC	2 cut(s)	310, 770
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	2 cut(s)	440, 706
ScrFI	CCNGG	2 cut(s)	569, 632
SetI	ASST	9 cut(s)	26, 59, 107, 309, 460, 512, 579, 630, 698
SfaNI	GCATC	2 cut(s)	178, 189
SfcI	CTRYAG	1 cut(s)	279
SgrAI	CRCCGGYG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
SphI	GCATGC	1 cut(s)	749
Sse9I	AATT	7 cut(s)	33, 87, 137, 287, 300, 461, 728
SsiI	CCGC	4 cut(s)	201, 228, 558, 757
StyD4I	CCNGG	2 cut(s)	567, 630
TaaI	ACNGT	2 cut(s)	159, 492
TaiI	ACGT	1 cut(s)	630
TasI	AATT	7 cut(s)	33, 87, 137, 287, 300, 461, 728
TatI	WGTACW	2 cut(s)	585, 720
TauI	GCSGC	2 cut(s)	204, 230
TfiI	GAWTC	3 cut(s)	120, 412, 520
Tru1I	TTAA	2 cut(s)	69, 474
Tru9I	TTAA	2 cut(s)	69, 474
TseFI	GTSAC	2 cut(s)	348, 510
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	2 cut(s)	348, 510
TspDTI	ATGAA	3 cut(s)	538, 689, 777
TspGWI	ACGGA	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	2 cut(s)	287, 728
XceI	RCATGY	1 cut(s)	749
XmiI	GTMKAC	1 cut(s)	612
XmnI	GAANNNNTTC	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.