Rh3DG076700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0007367
Physical Location & Seq
Forward (+)
5913378 .. 5916234
2857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG076700.1

Sequence Viewer

Length: 789 bp
ATGGCTATGGCTCCCAACCTCAACACCATTTCCATGTCCCTCACTCCATTCCTAACCTCTCCTCCGTTTTCACTCAAAACCCAGAACAGCTCACTATTCTTTAACACAATCCCTTCAACAATTCAGACACATAAAACCTCATTTCCACTGAGAATCTGCACTAACTCTCAATTCTGTAGCACCAGAAGACTGTTCCTTCCCTCAGTTTCTGGCATCTGGGATGCCATCACCGGCGGCAACAATCCCCGTGAAGCCGTTGCCGCAATCCGAGGTGGAATGGTTCTGTTTAGACAGGGTGATGTTGCAGGGTCTGTAGCAGAATTTGACAAGGCAATTGAGCTTGATCCTCGCCAAAAGGCATATCTTTGGCAAAGGGGGCTGTCACTTTACTATCTTGATAGATTTGAAGAAGGGGCAGAGCAGTTCCGAATAGACGTTGCCCAGAATCCAAATGATACAGAGGAGTCCATTTGGTGCTTTCTCTGTGAAGCTCAATTATATGGAGTTAAGGAAGCAAGGGAACGGTTTCTTGAGGTTGGCCGAGATCCAAGACCTGTCATGAGAGAAGCCTATAACATGTTTAAAGACGGTGGTGATCCAGAAAAGCTTGCTGATGCATTTAAAAATGGCCGAGACAGTGATTATTTCTATGCTTCTCTATATGCAGGCCTTTACTATGAAGCTCAGGTCTGTTTTAATTATAAGAACTTTCTCTTAGATCTTCTGCTGGTGTTACAATTGTTACATGTTGTATCTCAATTGAATCTGACTATCCCTGTAAATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.71

Weight (kDa)

5.34

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 702
AciI CCGC 2 cut(s) 234, 261
AclWI GGATC 3 cut(s) 338, 539, 590
AcoI YGGCCR 2 cut(s) 538, 628
AcsI RAATTY 1 cut(s) 320
AflIII ACRYGT 2 cut(s) 576, 745
AgsI TTSAA 3 cut(s) 117, 407, 763
AluBI AGCT 5 cut(s) 90, 340, 491, 607, 683
AluI AGCT 5 cut(s) 90, 340, 491, 607, 683
Alw26I GTCTC 1 cut(s) 627
AlwI GGATC 3 cut(s) 338, 539, 590
AlwNI CAGNNNCTG 2 cut(s) 209, 311
AoxI GGCC 3 cut(s) 538, 628, 667
ApoI RAATTY 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 525
AsuHPI GGTGA 3 cut(s) 220, 308, 605
BbsI GAAGAC 1 cut(s) 193
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 627
BfmI CTRYAG 2 cut(s) 175, 312
BglII AGATCT 1 cut(s) 718
BisI GCNGC 2 cut(s) 235, 261
BlsI GCNGC 2 cut(s) 236, 262
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 3 cut(s) 211, 222, 604
BpiI GAAGAC 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bse118I RCCGGY 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 3 cut(s) 140, 216, 698
BseRI GAGGAG 2 cut(s) 51, 476
BsgI GTGCAG 1 cut(s) 142
BshFI GGCC 3 cut(s) 540, 630, 669
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 627
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 3 cut(s) 540, 630, 669
Bsp143I GATC 4 cut(s) 343, 544, 595, 718
BspACI CCGC 2 cut(s) 234, 261
BspANI GGCC 3 cut(s) 540, 630, 669
BspCNI CTCAG 3 cut(s) 141, 215, 697
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 3 cut(s) 338, 539, 590
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 4 cut(s) 343, 544, 595, 718
Bst4CI ACNGT 4 cut(s) 192, 525, 590, 638
BstC8I GCNNGC 2 cut(s) 609, 667
BstDEI CTNAG 4 cut(s) 149, 202, 684, 715
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 4 cut(s) 346, 547, 598, 721
BstMAI GTCTC 1 cut(s) 627
BstMBI GATC 4 cut(s) 343, 544, 595, 718
BstMWI GCNNNNNNNGC 2 cut(s) 260, 376
BstNSI RCATGY 2 cut(s) 580, 749
BstSFI CTRYAG 2 cut(s) 175, 312
BstV2I GAAGAC 1 cut(s) 193
BstX2I RGATCY 2 cut(s) 544, 718
BstYI RGATCY 2 cut(s) 544, 718
BsuRI GGCC 3 cut(s) 540, 630, 669
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 146, 643
Cac8I GCNNGC 2 cut(s) 609, 667
CaiI CAGNNNCTG 2 cut(s) 209, 311
CciI TCATGA 1 cut(s) 558
Cfr10I RCCGGY 1 cut(s) 230
CviAII CATG 4 cut(s) 34, 559, 577, 746
DdeI CTNAG 4 cut(s) 149, 202, 684, 715
DpnI GATC 4 cut(s) 345, 546, 597, 720
DpnII GATC 4 cut(s) 343, 544, 595, 718
DraI TTTAAA 2 cut(s) 583, 622
EaeI YGGCCR 2 cut(s) 538, 628
Eco147I AGGCCT 1 cut(s) 669
EcoT22I ATGCAT 1 cut(s) 619
FaeI CATG 4 cut(s) 37, 562, 580, 749
FaqI GGGAC 1 cut(s) 22
FatI CATG 4 cut(s) 33, 558, 576, 745
Fnu4HI GCNGC 2 cut(s) 235, 261
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 235, 261
GluI GCNGC 2 cut(s) 235, 261
HaeIII GGCC 3 cut(s) 540, 630, 669
HapII CCGG 1 cut(s) 231
Hin1II CATG 4 cut(s) 37, 562, 580, 749
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 4 cut(s) 153, 445, 464, 763
HpaII CCGG 1 cut(s) 231
HphI GGTGA 3 cut(s) 220, 308, 605
Hpy188I TCNGA 4 cut(s) 126, 269, 428, 768
Hpy188III TCNNGA 4 cut(s) 395, 530, 559, 599
HpyAV CCTTC 3 cut(s) 123, 206, 404
HpyCH4III ACNGT 4 cut(s) 192, 525, 590, 638
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 4 cut(s) 159, 305, 617, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 376
HpyF3I CTNAG 4 cut(s) 149, 202, 684, 715
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 4 cut(s) 37, 562, 580, 749
Kzo9I GATC 4 cut(s) 343, 544, 595, 718
LmnI GCTCC 1 cut(s) 16
LweI GCATC 3 cut(s) 211, 222, 604
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 3 cut(s) 381, 732, 741
MalI GATC 4 cut(s) 345, 546, 597, 720
MboI GATC 4 cut(s) 343, 544, 595, 718
MboII GAAGA 3 cut(s) 198, 419, 713
MfeI CAATTG 3 cut(s) 333, 737, 758
MflI RGATCY 2 cut(s) 544, 718
MluCI AATT 8 cut(s) 120, 170, 320, 333, 494, 697, 737, 758
MlyI GAGTC 1 cut(s) 473
Mph1103I ATGCAT 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 5 cut(s) 102, 507, 582, 621, 696
MslI CAYNNNNRTG 1 cut(s) 32
MspI CCGG 1 cut(s) 231
MunI CAATTG 3 cut(s) 333, 737, 758
MwoI GCNNNNNNNGC 2 cut(s) 260, 376
NdeII GATC 4 cut(s) 343, 544, 595, 718
NlaIII CATG 4 cut(s) 37, 562, 580, 749
NlaIV GGNNCC 1 cut(s) 12
NmeAIII GCCGAG 2 cut(s) 566, 656
NmuCI GTSAC 1 cut(s) 381
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 2 cut(s) 580, 749
PagI TCATGA 1 cut(s) 558
PceI AGGCCT 1 cut(s) 669
PciI ACATGT 2 cut(s) 576, 745
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 3 cut(s) 153, 445, 763
PkrI GCNGC 2 cut(s) 236, 262
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PscI ACATGT 2 cut(s) 576, 745
PsiI TTATAA 1 cut(s) 702
PspN4I GGNNCC 1 cut(s) 12
PstNI CAGNNNCTG 2 cut(s) 209, 311
PsuI RGATCY 2 cut(s) 544, 718
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 5 cut(s) 102, 507, 582, 621, 696
SatI GCNGC 2 cut(s) 235, 261
Sau3AI GATC 4 cut(s) 343, 544, 595, 718
SchI GAGTC 1 cut(s) 473
SfaNI GCATC 3 cut(s) 211, 222, 604
SfcI CTRYAG 2 cut(s) 175, 312
SgrAI CRCCGGYG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 8 cut(s) 120, 170, 320, 333, 494, 697, 737, 758
SseBI AGGCCT 1 cut(s) 669
SsiI CCGC 2 cut(s) 234, 261
StuI AGGCCT 1 cut(s) 669
TaaI ACNGT 4 cut(s) 192, 525, 590, 638
TaiI ACGT 1 cut(s) 438
TasI AATT 8 cut(s) 120, 170, 320, 333, 494, 697, 737, 758
TauI GCSGC 2 cut(s) 237, 263
TfiI GAWTC 3 cut(s) 153, 445, 763
Tru1I TTAA 5 cut(s) 102, 507, 582, 621, 696
Tru9I TTAA 5 cut(s) 102, 507, 582, 621, 696
TscAI CASTG 2 cut(s) 153, 643
TseFI GTSAC 1 cut(s) 381
Tsp45I GTSAC 1 cut(s) 381
TspDTI ATGAA 1 cut(s) 693
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 2 cut(s) 153, 643
XapI RAATTY 1 cut(s) 320
XceI RCATGY 2 cut(s) 580, 749
XmnI GAANNNNTTC 1 cut(s) 525
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.