Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002647

Physical Location & Seq

Genomic Coordinates Reverse (-)

21143433 .. 21148291

Gene Structure 4859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0219500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTCGGGAGAAGATTCAGATCAAGAAGATTGACAACGCCACAGCGAGGCAGGTGACGTTTTCAAAGAGAAGAAGAGGGCTTTTGAAGAAGGCCGAGGAGCTCTCAGTTCTCTGTGATGCAGATATTGCTCTTATTATCTTCTCTTCTACCGGAAAGCTCTTTGAATATGCTAGCTCAAGCATGAAGGAAATCTTAGAAAGGCACCGCTTGCACTCCAAAAATCTCGACAAATTAGAACAGCCCTCTCTTGAGTTACAGCTAGTGGAGAACAGCAACTACTCCAGGTTGAGCAAGGAAATAGCAGCAAAAAGCCATCAACTTAGGCAGATGAGGGGAGAAGAACTTCATGGATTAAAATTGGAAGAACTGCAACAGCTGGAGAACTCACTTGAATCTGGATTGGGCCGCGTGATTGGGAAAAAGGGTGAAAAGATTATGAAAGAGATCACTGAGCTTCAGAAAAATGCCGTCCAGTTGATTGAGGAGAATGAACGCTTAAGACAGCAAGTGGTGGAAAGAACTGATGGCAGACGGAGGCATGTTCATGCTGATTCAGAGAACAGGTTTACGGAGGAGGGCCAGTCATCAGAGTCCGTAACCAATCTCTGTAACTCTAATAATGCTCCTCAAGACTATGACAGCTCAGATACGTCTCTCAAGTTAGGGCTACCTTATTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

228

Amino Acids

26.0

Weight (kDa)

7.78

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.6e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 171	1.9e-16	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05500 AT3G05500
fragaria_vesca	FvH4_1g23500 FvH4_6g06530
malus_domestica	MD04G1201000.v1.1 MD12G1213500.v1.1
prunus_persica	Prupe.6G321100_v2.0.a1
pyrus_communis	pycom04g17710 pycom12g19940
rosa_chinensis	RchiOBHm_Chr2g0118901 RchiOBHm_Chr3g0455691
rosa_laevigata	RLG00000018432 RLG00000018434 RLG00000025340
rosa_multiflora	Rmu_sc0001653.1_g000034 Rmu_sc0001653.1_g000036 Rmu_sc0001884.1_g000033 Rmu_sc0002883.1_g000011 Rmu_sc0026117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124600 Rroxscaffold_6G00423580 Rroxscaffold_6G00424090
rosa_rugosa	Rorug02G0219400 Rorug02G0219500 Rorug03G0009200
rosa_samantha	Rh2AG276600 Rh2AG276700 Rh2BG288300 Rh2BG288400 Rh2DG283500 Rh2DG283700 Rh2DG302800 Rh3AG068800 Rh3BG071300 Rh3CG069600 Rh3DG071300
rosa_wichuraiana	Rw2G022020 Rw2G022030 Rw3G005530 Rw3G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	204
AccII	CGCG	1 cut(s)	411
AciI	CCGC	2 cut(s)	208, 409
AcuI	CTGAAG	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	48, 680
AflII	CTTAAG	1 cut(s)	499
AgsI	TTSAA	4 cut(s)	66, 88, 167, 395
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	7 cut(s)	103, 160, 177, 262, 379, 457, 645
AluI	AGCT	7 cut(s)	103, 160, 177, 262, 379, 457, 645
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	660
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	3 cut(s)	93, 406, 580
ApeKI	GCWGC	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	406, 580
AsuHPI	GGTGA	2 cut(s)	67, 440
AsuNHI	GCTAGC	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	2 cut(s)	324, 521
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	2 cut(s)	174, 263
BfrI	CTTAAG	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	306, 409
BlsI	GCNGC	2 cut(s)	307, 410
Bme1390I	CCNGG	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	406, 580
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	109
BmtI	GCTAGC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	2 cut(s)	268, 401
BpuEI	CTTGAG	4 cut(s)	163, 272, 615, 644
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 680
Bse1I	ACTGG	2 cut(s)	475, 583
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	48, 680
BseMII	CTCAG	3 cut(s)	120, 444, 660
BseNI	ACTGG	2 cut(s)	475, 583
BseRI	GAGGAG	4 cut(s)	113, 500, 590, 618
BseXI	GCAGC	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	3 cut(s)	95, 408, 582
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	48, 680
BsmAI	GTCTC	1 cut(s)	660
BsmBI	CGTCTC	1 cut(s)	660
BsnI	GGCC	3 cut(s)	95, 408, 582
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	21, 447
BspACI	CCGC	2 cut(s)	208, 409
BspANI	GGCC	3 cut(s)	95, 408, 582
BspCNI	CTCAG	3 cut(s)	119, 445, 659
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	204
BspTI	CTTAAG	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	475, 583
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	21, 447
Bst2UI	CCWGG	1 cut(s)	286
Bst6I	CTCTTC	2 cut(s)	70, 151
BstAFI	CTTAAG	1 cut(s)	499
BstAPI	GCANNNNNTGC	2 cut(s)	128, 211
BstC8I	GCNNGC	2 cut(s)	175, 212
BstDEI	CTNAG	5 cut(s)	106, 196, 323, 453, 646
BstFNI	CGCG	1 cut(s)	411
BstKTI	GATC	2 cut(s)	24, 450
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	2 cut(s)	21, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 211
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	95, 408, 582
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	175, 212
Cfr13I	GGNCC	2 cut(s)	406, 580
CviAII	CATG	4 cut(s)	184, 350, 542, 548
DdeI	CTNAG	5 cut(s)	106, 196, 323, 453, 646
DpnI	GATC	2 cut(s)	23, 449
DpnII	GATC	2 cut(s)	21, 447
Eam1104I	CTCTTC	2 cut(s)	70, 151
EarI	CTCTTC	2 cut(s)	70, 151
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	660
FaeI	CATG	4 cut(s)	187, 353, 545, 551
FaiI	YATR	7 cut(s)	171, 185, 351, 440, 543, 549, 639
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	4 cut(s)	183, 349, 541, 547
Fnu4HI	GCNGC	2 cut(s)	306, 409
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	306, 409
FspBI	CTAG	2 cut(s)	174, 263
GluI	GCNGC	2 cut(s)	306, 409
GsuI	CTGGAG	2 cut(s)	268, 401
HaeIII	GGCC	3 cut(s)	95, 408, 582
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	4 cut(s)	187, 353, 545, 551
HinfI	GANTC	4 cut(s)	16, 395, 554, 593
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	67, 440
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	5 cut(s)	21, 462, 559, 592, 649
Hpy188III	TCNNGA	6 cut(s)	8, 25, 227, 251, 399, 632
Hpy8I	GTNNAC	1 cut(s)	570
HpyAV	CCTTC	2 cut(s)	85, 181
HpyCH4IV	ACGT	2 cut(s)	59, 653
HpyCH4V	TGCA	3 cut(s)	122, 214, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 211
HpyF3I	CTNAG	5 cut(s)	106, 196, 323, 453, 646
HpySE526I	ACGT	2 cut(s)	59, 653
Hsp92II	CATG	4 cut(s)	187, 353, 545, 551
Kzo9I	GATC	2 cut(s)	21, 447
LmnI	GCTCC	2 cut(s)	100, 631
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	174, 263
MaeII	ACGT	2 cut(s)	59, 653
MaeIII	GTNAC	4 cut(s)	55, 255, 598, 611
MalI	GATC	2 cut(s)	23, 449
MboI	GATC	2 cut(s)	21, 447
MboII	GAAGA	9 cut(s)	25, 40, 84, 87, 100, 133, 138, 353, 377
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	233, 359
MlyI	GAGTC	1 cut(s)	602
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	2 cut(s)	356, 500
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	379
MspCI	CTTAAG	1 cut(s)	499
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	128, 211
NdeII	GATC	2 cut(s)	21, 447
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	4 cut(s)	187, 353, 545, 551
NlaIV	GGNNCC	1 cut(s)	206
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	545
PaqCI	CACCTGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	16, 395, 554
PkrI	GCNGC	2 cut(s)	307, 410
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	2 cut(s)	406, 580
PsrI	GAACNNNNNNTAC	2 cut(s)	263, 295
PvuII	CAGCTG	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	356, 500
SatI	GCNGC	2 cut(s)	306, 409
Sau3AI	GATC	2 cut(s)	21, 447
Sau96I	GGNCC	2 cut(s)	406, 580
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	5 cut(s)	178, 251, 499, 630, 659
SmoI	CTYRAG	5 cut(s)	178, 251, 499, 630, 659
Sse9I	AATT	2 cut(s)	233, 359
SsiI	CCGC	2 cut(s)	208, 409
SspMI	CTAG	2 cut(s)	174, 263
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	284
TaiI	ACGT	2 cut(s)	62, 656
TaqI	TCGA	1 cut(s)	228
TasI	AATT	2 cut(s)	233, 359
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	3 cut(s)	16, 395, 554
Tru1I	TTAA	2 cut(s)	356, 500
Tru9I	TTAA	2 cut(s)	356, 500
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	200, 338, 455, 507, 536
TspGWI	ACGGA	3 cut(s)	550, 586, 587
TspRI	CASTG	1 cut(s)	457
Vha464I	CTTAAG	1 cut(s)	499
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	174, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.