Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002647

Physical Location & Seq

Genomic Coordinates Reverse (-)

28391939 .. 28393832

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G321100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCCCAGGAAGATTTGAGCGTGCAGGTGCAACAACAGATGGCTGAGGAGGAGGAACAGAGGCTCAAGTACCTGGAATTTGTTCAAGTGGCTGCAGCTCATGCCGCGGTTTGCTTCTTAAATCTGTACGGATTTGCCAAGGAAAGGTCTGGTCCTTTGAAGCCTGGAGTTGAATCCGTGGAGGGAACTGTGAAGAACGTTGTTGGACCTGTCTATAACAAGTACCATGATGTCCCTGCTCACCTCCTCACCTTCGTGGATCGCAAGGTTGATCAATCTGTGACCAAGCTGGACAGTCGTATGCCGCCGGTGTTTAAGCAGGCTTCATTCAAAGCCTTATCAGCTGCTCAAAAAGCCCCAGAGGCGGCTCGAGCGGTTGCTTCTGAGGTTAAGCGTGCTGGGGTTGTAGACACTGCCTCAAGCTATGCTAAATCTGTCTACACCAAGTGTGAACCCGCAGCTAAAGATCTGTATGCTAGGTATGAACCAAAAGCTGAGCAATGTGCCGTCTCTGCGTGGCGAAAGGTGAACCAAGTCCTCCCAAAGGTGGTTGAGGTTGTTGTACCAACTGCAGCATATTGCTCTGAAAAGTACAACCAGACTGTACAGCACACTGCAGAGAAGGGGTACAGGGTCTCCTCCTATATGCCTCTGGTTCCCACAGAGAAAATTGCCAAGGTTTTTGCAGGGAAGGTGCCTGAAGCAGAGCCTTTGCTTGCAAGTCATGGTGAAGTTGATGTTGCCCTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

251

Amino Acids

27.43

Weight (kDa)

8.21

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05500 AT3G05500
fragaria_vesca	FvH4_1g23500 FvH4_6g06530
malus_domestica	MD04G1201000.v1.1 MD12G1213500.v1.1
prunus_persica	Prupe.6G321100_v2.0.a1
pyrus_communis	pycom04g17710 pycom12g19940
rosa_chinensis	RchiOBHm_Chr2g0118901 RchiOBHm_Chr3g0455691
rosa_laevigata	RLG00000018432 RLG00000018434 RLG00000025340
rosa_multiflora	Rmu_sc0001653.1_g000034 Rmu_sc0001653.1_g000036 Rmu_sc0001884.1_g000033 Rmu_sc0002883.1_g000011 Rmu_sc0026117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124600 Rroxscaffold_6G00423580 Rroxscaffold_6G00424090
rosa_rugosa	Rorug02G0219400 Rorug02G0219500 Rorug03G0009200
rosa_samantha	Rh2AG276600 Rh2AG276700 Rh2BG288300 Rh2BG288400 Rh2DG283500 Rh2DG283700 Rh2DG302800 Rh3AG068800 Rh3BG071300 Rh3CG069600 Rh3DG071300
rosa_wichuraiana	Rw2G022020 Rw2G022030 Rw3G005530 Rw3G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	694
AccBSI	CCGCTC	1 cut(s)	374
AccI	GTMKAC	2 cut(s)	408, 438
AccII	CGCG	1 cut(s)	107
AciI	CCGC	6 cut(s)	105, 107, 305, 365, 374, 456
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	720
AdeI	CACNNNGTG	1 cut(s)	447
AfaI	GTAC	7 cut(s)	71, 128, 224, 564, 593, 606, 629
AfiI	CCNNNNNNNGG	4 cut(s)	144, 364, 544, 547
AgsI	TTSAA	4 cut(s)	86, 160, 173, 331
AjnI	CCWGG	3 cut(s)	6, 72, 163
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	6 cut(s)	98, 289, 344, 423, 461, 494
AluI	AGCT	6 cut(s)	98, 289, 344, 423, 461, 494
Alw26I	GTCTC	2 cut(s)	514, 640
AlwI	GGATC	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	92, 95, 344, 458, 572
ApoI	RAATTY	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	3 cut(s)	4, 152, 206
AsuHPI	GGTGA	4 cut(s)	233, 241, 538, 740
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	2 cut(s)	152, 206
BanI	GGYRCC	1 cut(s)	694
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	5 cut(s)	79, 107, 331, 470, 584
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	3 cut(s)	8, 74, 165
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	514, 640
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	3 cut(s)	93, 570, 615
BfuAI	ACCTGC	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	466
BisI	GCNGC	8 cut(s)	93, 96, 105, 305, 345, 366, 459, 573
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	8 cut(s)	94, 97, 106, 306, 346, 367, 460, 574
Bme1390I	CCNGG	3 cut(s)	8, 74, 165
Bme18I	GGWCC	2 cut(s)	152, 206
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	3 cut(s)	4, 152, 206
BmiI	GGNNCC	2 cut(s)	657, 696
BmrFI	CCNGG	3 cut(s)	8, 74, 165
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	50, 403
BsaI	GGTCTC	1 cut(s)	640
BsaJI	CCNNGG	5 cut(s)	6, 105, 138, 177, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 364, 544, 547
Bse118I	RCCGGY	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	506
BseBI	CCWGG	3 cut(s)	8, 74, 165
BseDI	CCNNGG	5 cut(s)	6, 105, 138, 177, 675
BseLI	CCNNNNNNNGG	4 cut(s)	144, 364, 544, 547
BseMI	GCAATG	1 cut(s)	506
BseMII	CTCAG	3 cut(s)	36, 375, 486
BseRI	GAGGAG	4 cut(s)	62, 65, 236, 628
BseXI	GCAGC	5 cut(s)	79, 107, 331, 470, 584
BseYI	CCCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	694
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	4 cut(s)	144, 364, 544, 547
BsmAI	GTCTC	2 cut(s)	514, 640
BsmBI	CGTCTC	1 cut(s)	514
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	640
BsoBI	CYCGRG	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	3 cut(s)	259, 271, 466
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	6 cut(s)	105, 107, 305, 365, 374, 456
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	37, 376, 487
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	657, 696
BspMAI	CTGCAG	3 cut(s)	97, 574, 619
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	694
BspTNI	GGTCTC	1 cut(s)	640
BsrBI	CCGCTC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	506
BsrFI	RCCGGY	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	5 cut(s)	6, 105, 138, 177, 675
BssMI	GATC	3 cut(s)	259, 271, 466
BssT1I	CCWWGG	2 cut(s)	138, 675
Bst2UI	CCWGG	3 cut(s)	8, 74, 165
Bst4CI	ACNGT	3 cut(s)	190, 296, 604
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	604
BstC8I	GCNNGC	4 cut(s)	23, 321, 396, 717
BstDEI	CTNAG	3 cut(s)	45, 384, 495
BstDSI	CCRYGG	2 cut(s)	105, 177
BstENI	CCTNNNNNAGG	1 cut(s)	542
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	3 cut(s)	262, 274, 469
BstMAI	GTCTC	2 cut(s)	514, 640
BstMBI	GATC	3 cut(s)	259, 271, 466
BstMWI	GCNNNNNNNGC	7 cut(s)	101, 104, 341, 353, 362, 371, 512
BstNI	CCWGG	3 cut(s)	8, 74, 165
BstSCI	CCNGG	3 cut(s)	6, 72, 163
BstSFI	CTRYAG	3 cut(s)	93, 570, 615
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	5 cut(s)	79, 107, 331, 470, 584
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	105, 177
BtsI	GCAGTG	2 cut(s)	411, 612
BtsIMutI	CAGTG	2 cut(s)	411, 612
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	4 cut(s)	23, 321, 396, 717
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	4, 152, 206
Cfr42I	CCGCGG	1 cut(s)	108
Csp6I	GTAC	7 cut(s)	70, 127, 223, 563, 592, 605, 628
CviAII	CATG	3 cut(s)	101, 227, 725
CviQI	GTAC	7 cut(s)	70, 127, 223, 563, 592, 605, 628
DdeI	CTNAG	3 cut(s)	45, 384, 495
DpnI	GATC	3 cut(s)	261, 273, 468
DpnII	GATC	3 cut(s)	259, 271, 466
DraIII	CACNNNGTG	1 cut(s)	447
Eco130I	CCWWGG	2 cut(s)	138, 675
Eco31I	GGTCTC	1 cut(s)	640
Eco47I	GGWCC	2 cut(s)	152, 206
Eco57I	CTGAAG	1 cut(s)	720
Eco88I	CYCGRG	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	542
EcoRII	CCWGG	3 cut(s)	6, 72, 163
EcoT14I	CCWWGG	2 cut(s)	138, 675
ErhI	CCWWGG	2 cut(s)	138, 675
Esp3I	CGTCTC	1 cut(s)	514
FaeI	CATG	3 cut(s)	104, 230, 728
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	3 cut(s)	100, 226, 724
FauI	CCCGC	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	2 cut(s)	408, 438
Fnu4HI	GCNGC	8 cut(s)	93, 96, 105, 305, 345, 366, 459, 573
Fsp4HI	GCNGC	8 cut(s)	93, 96, 105, 305, 345, 366, 459, 573
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	8 cut(s)	93, 96, 105, 305, 345, 366, 459, 573
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	3 cut(s)	104, 230, 728
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	4 cut(s)	233, 241, 538, 740
Hpy166II	GTNNAC	4 cut(s)	409, 439, 452, 529
Hpy188I	TCNGA	2 cut(s)	385, 586
Hpy8I	GTNNAC	4 cut(s)	409, 439, 452, 529
HpyAV	CCTTC	3 cut(s)	262, 616, 685
HpyCH4III	ACNGT	3 cut(s)	190, 296, 604
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	7 cut(s)	25, 31, 95, 572, 617, 686, 719
HpyF10VI	GCNNNNNNNGC	7 cut(s)	101, 104, 341, 353, 362, 371, 512
HpyF3I	CTNAG	3 cut(s)	45, 384, 495
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	104, 230, 728
Ksp22I	TGATCA	1 cut(s)	271
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	259, 271, 466
Lsp1109I	GCAGC	5 cut(s)	79, 107, 331, 470, 584
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	261, 273, 468
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	3 cut(s)	259, 271, 466
MboII	GAAGA	2 cut(s)	23, 205
MflI	RGATCY	1 cut(s)	466
MluCI	AATT	2 cut(s)	77, 669
MmeI	TCCRAC	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	3 cut(s)	119, 315, 390
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	2 cut(s)	107, 344
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	3 cut(s)	8, 74, 165
MvaI	CCWGG	3 cut(s)	8, 74, 165
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	7 cut(s)	101, 104, 341, 353, 362, 371, 512
NdeII	GATC	3 cut(s)	259, 271, 466
NlaIII	CATG	3 cut(s)	104, 230, 728
NlaIV	GGNNCC	2 cut(s)	657, 696
NmuCI	GTSAC	1 cut(s)	280
OliI	CACNNNNGTG	1 cut(s)	254
PaeR7I	CTCGAG	1 cut(s)	369
PaqCI	CACCTGC	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	8 cut(s)	94, 97, 106, 306, 346, 367, 460, 574
Psp1406I	AACGTT	1 cut(s)	198
Psp6I	CCWGG	3 cut(s)	6, 72, 163
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	3 cut(s)	6, 72, 163
PspN4I	GGNNCC	2 cut(s)	657, 696
PspPI	GGNCC	3 cut(s)	4, 152, 206
PspXI	VCTCGAGB	1 cut(s)	369
PstI	CTGCAG	3 cut(s)	97, 574, 619
PsuI	RGATCY	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	7 cut(s)	71, 128, 224, 564, 593, 606, 629
RsaNI	GTAC	7 cut(s)	70, 127, 223, 563, 592, 605, 628
RseI	CAYNNNNRTG	1 cut(s)	254
SacII	CCGCGG	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	119, 315, 390
SatI	GCNGC	8 cut(s)	93, 96, 105, 305, 345, 366, 459, 573
Sau3AI	GATC	3 cut(s)	259, 271, 466
Sau96I	GGNCC	3 cut(s)	4, 152, 206
ScrFI	CCNGG	3 cut(s)	8, 74, 165
SfcI	CTRYAG	3 cut(s)	93, 570, 615
Sfr274I	CTCGAG	1 cut(s)	369
Sfr303I	CCGCGG	1 cut(s)	108
SgrAI	CRCCGGYG	1 cut(s)	307
SgrBI	CCGCGG	1 cut(s)	108
SinI	GGWCC	2 cut(s)	152, 206
SlaI	CTCGAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	3 cut(s)	65, 369, 418
SmoI	CTYRAG	3 cut(s)	65, 369, 418
Sse9I	AATT	2 cut(s)	77, 669
SsiI	CCGC	6 cut(s)	105, 107, 305, 365, 374, 456
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	3 cut(s)	6, 72, 163
StyI	CCWWGG	2 cut(s)	138, 675
TaaI	ACNGT	3 cut(s)	190, 296, 604
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	370
TasI	AATT	2 cut(s)	77, 669
TatI	WGTACW	2 cut(s)	591, 604
TauI	GCSGC	3 cut(s)	107, 307, 368
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	3 cut(s)	119, 315, 390
Tru9I	TTAA	3 cut(s)	119, 315, 390
TscAI	CASTG	2 cut(s)	418, 619
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	5 cut(s)	92, 95, 344, 458, 572
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	3 cut(s)	315, 498, 737
TspGWI	ACGGA	2 cut(s)	144, 166
TspRI	CASTG	2 cut(s)	418, 619
VpaK11BI	GGWCC	2 cut(s)	152, 206
XagI	CCTNNNNNAGG	1 cut(s)	542
XapI	RAATTY	1 cut(s)	77
XhoI	CTCGAG	1 cut(s)	369
XmiI	GTMKAC	2 cut(s)	408, 438
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.