Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002647

Physical Location & Seq

Genomic Coordinates Reverse (-)

45316757 .. 45318392

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCCCAACAAGATTCCAGCGTGCAGGAACCACAGATGGGTGAGAATAAGGAGGAGCAGAGTCTCAAATATTTGGGATTTGTTCAAAACGCCGCCGTTGCGTCCGGGGCTTGCGTCACGAAAGTGTACGGTTATGCGAAGGAGAGGTCTGGTCCTTTGAAGAATGGAGTTGCGTGTGTGGAGGGGAAGGTGAAGACTGTTGTTGGACCGGTTTATGAGAAGTACCAGGAAGCCCCGGCCCAAATTCTCACCTTTGTTGATCGCAAGGTTGATCAATCTGTGACCAAGGCTGCCAAGCTAGATGTGCGTCCAGTGATCAGGCAGGCCTCATCCAAAGCCTTATCAGTTGCTCAAAAGGCACCGGAGACGGCTTGTACAGCCGCTAAATCTGTCTACACCAAGTATGAACCAAAAGCTGAGGAATGCGCTGCTTCTGCGTGGCGAAAGCTGAATGAACTCCCCGTCTTCCCAAAGGTGGCTGGGGTAGTTGTACCAGCTGCGGCATATTGTTCTGAGAAGTACAATGAGACCGTGCAACACACCGCCGAGAAGGGGTACAGGGTTGCCTCTTATATGCCATTGGTTCCCACAGAGAGAATTGCCAAGGTCTTCGGAGAGAAGGTGCCTGAACCAGAGCCAATGATCGCAGCAACTCATGGGGAGACTGATATTGCTGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

227

Amino Acids

24.56

Weight (kDa)

8.46

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	17 - 130	3.2e-38	Rubber elongation factor protein (REF)
REF	PF05755	125 - 205	3.5e-31	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05500 AT3G05500
fragaria_vesca	FvH4_1g23500 FvH4_6g06530
malus_domestica	MD04G1201000.v1.1 MD12G1213500.v1.1
prunus_persica	Prupe.6G321100_v2.0.a1
pyrus_communis	pycom04g17710 pycom12g19940
rosa_chinensis	RchiOBHm_Chr2g0118901 RchiOBHm_Chr3g0455691
rosa_laevigata	RLG00000018432 RLG00000018434 RLG00000025340
rosa_multiflora	Rmu_sc0001653.1_g000034 Rmu_sc0001653.1_g000036 Rmu_sc0001884.1_g000033 Rmu_sc0002883.1_g000011 Rmu_sc0026117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124600 Rroxscaffold_6G00423580 Rroxscaffold_6G00424090
rosa_rugosa	Rorug02G0219400 Rorug02G0219500 Rorug03G0009200
rosa_samantha	Rh2AG276600 Rh2AG276700 Rh2BG288300 Rh2BG288400 Rh2DG283500 Rh2DG283700 Rh2DG302800 Rh3AG068800 Rh3BG071300 Rh3CG069600 Rh3DG071300
rosa_wichuraiana	Rw2G022020 Rw2G022030 Rw3G005530 Rw3G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	358, 622
AccI	GTMKAC	1 cut(s)	393
AciI	CCGC	4 cut(s)	93, 381, 500, 543
AcsI	RAATTY	1 cut(s)	243
AfaI	GTAC	6 cut(s)	128, 224, 376, 492, 521, 557
AfiI	CCNNNNNNNGG	3 cut(s)	38, 475, 552
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	3 cut(s)	86, 160, 680
AjnI	CCWGG	1 cut(s)	225
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	4 cut(s)	298, 416, 448, 497
AluI	AGCT	4 cut(s)	298, 416, 448, 497
Alw26I	GTCTC	4 cut(s)	68, 359, 521, 656
AoxI	GGCC	3 cut(s)	3, 237, 324
ApeKI	GCWGC	4 cut(s)	290, 428, 497, 647
ApoI	RAATTY	1 cut(s)	243
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AsiGI	ACCGGT	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	4 cut(s)	4, 152, 206, 238
AsuC2I	CCSGG	2 cut(s)	106, 236
AsuHPI	GGTGA	3 cut(s)	53, 202, 241
AvaII	GGWCC	2 cut(s)	152, 206
BanI	GGYRCC	2 cut(s)	358, 622
BbsI	GAAGAC	3 cut(s)	200, 457, 601
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	4 cut(s)	277, 415, 484, 659
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	2 cut(s)	80, 384
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	2 cut(s)	271, 315
BcnI	CCSGG	2 cut(s)	106, 236
BcoDI	GTCTC	4 cut(s)	68, 359, 521, 656
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	7 cut(s)	93, 291, 381, 429, 498, 501, 648
BlsI	GCNGC	7 cut(s)	94, 292, 382, 430, 499, 502, 649
Bme1390I	CCNGG	3 cut(s)	106, 227, 236
Bme18I	GGWCC	2 cut(s)	152, 206
BmgT120I	GGNCC	4 cut(s)	4, 152, 206, 238
BmiI	GGNNCC	4 cut(s)	30, 360, 585, 624
BmrFI	CCNGG	3 cut(s)	106, 227, 236
BpiI	GAAGAC	3 cut(s)	200, 457, 601
Bpu10I	CCTNAGC	1 cut(s)	417
BpuMI	CCSGG	2 cut(s)	106, 236
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	4 cut(s)	105, 234, 285, 603
BsaWI	WCCGGW	2 cut(s)	208, 361
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 475, 552
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	4 cut(s)	105, 234, 285, 603
BseGI	GGATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	3 cut(s)	38, 475, 552
BseMII	CTCAG	2 cut(s)	408, 504
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	4 cut(s)	277, 415, 484, 659
BseYI	CCCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	5, 239, 326
BshNI	GGYRCC	2 cut(s)	358, 622
BshTI	ACCGGT	1 cut(s)	208
BsiSI	CCGG	4 cut(s)	105, 209, 236, 362
BslI	CCNNNNNNNGG	3 cut(s)	38, 475, 552
BsmAI	GTCTC	4 cut(s)	68, 359, 521, 656
BsmBI	CGTCTC	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	5, 239, 326
Bso31I	GGTCTC	1 cut(s)	521
Bsp1407I	TGTACA	1 cut(s)	374
Bsp143I	GATC	4 cut(s)	259, 271, 315, 642
BspACI	CCGC	4 cut(s)	93, 381, 500, 543
BspANI	GGCC	3 cut(s)	5, 239, 326
BspCNI	CTCAG	2 cut(s)	409, 505
BspLI	GGNNCC	4 cut(s)	30, 360, 585, 624
BspT107I	GGYRCC	2 cut(s)	358, 622
BspTNI	GGTCTC	1 cut(s)	521
BsrFI	RCCGGY	1 cut(s)	208
BsrGI	TGTACA	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	4 cut(s)	105, 234, 285, 603
BssMI	GATC	4 cut(s)	259, 271, 315, 642
BssT1I	CCWWGG	2 cut(s)	285, 603
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	3 cut(s)	131, 199, 532
BstAUI	TGTACA	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	23, 112, 324
BstDEI	CTNAG	2 cut(s)	417, 513
BstF5I	GGATG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	4 cut(s)	262, 274, 318, 645
BstMAI	GTCTC	4 cut(s)	68, 359, 521, 656
BstMBI	GATC	4 cut(s)	259, 271, 315, 642
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 107, 304, 356, 377, 434
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	3 cut(s)	104, 225, 234
BstV1I	GCAGC	4 cut(s)	277, 415, 484, 659
BstV2I	GAAGAC	3 cut(s)	200, 457, 601
BsuRI	GGCC	3 cut(s)	5, 239, 326
BtsCI	GGATG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	23, 112, 324
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	4 cut(s)	4, 152, 206, 238
CseI	GACGC	3 cut(s)	90, 103, 296
Csp6I	GTAC	6 cut(s)	127, 223, 375, 491, 520, 556
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	1 cut(s)	656
CviQI	GTAC	6 cut(s)	127, 223, 375, 491, 520, 556
DdeI	CTNAG	2 cut(s)	417, 513
DpnI	GATC	4 cut(s)	261, 273, 317, 644
DpnII	GATC	4 cut(s)	259, 271, 315, 642
Eco130I	CCWWGG	2 cut(s)	285, 603
Eco147I	AGGCCT	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	2 cut(s)	152, 206
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	285, 603
ErhI	CCWWGG	2 cut(s)	285, 603
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	1 cut(s)	659
FaiI	YATR	7 cut(s)	135, 216, 405, 505, 573, 575, 657
FatI	CATG	1 cut(s)	655
FbaI	TGATCA	2 cut(s)	271, 315
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	7 cut(s)	93, 291, 381, 429, 498, 501, 648
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	7 cut(s)	93, 291, 381, 429, 498, 501, 648
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	7 cut(s)	93, 291, 381, 429, 498, 501, 648
GsaI	CCCAGC	1 cut(s)	483
HaeIII	GGCC	3 cut(s)	5, 239, 326
HapII	CCGG	4 cut(s)	105, 209, 236, 362
HgaI	GACGC	3 cut(s)	90, 103, 296
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	1 cut(s)	659
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	14, 61
HpaII	CCGG	4 cut(s)	105, 209, 236, 362
HphI	GGTGA	3 cut(s)	53, 202, 241
Hpy166II	GTNNAC	2 cut(s)	127, 394
Hpy188I	TCNGA	2 cut(s)	514, 614
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	2 cut(s)	127, 394
HpyAV	CCTTC	4 cut(s)	133, 181, 544, 613
HpyCH4III	ACNGT	3 cut(s)	131, 199, 532
HpyCH4V	TGCA	2 cut(s)	25, 535
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 107, 304, 356, 377, 434
HpyF3I	CTNAG	2 cut(s)	417, 513
Hsp92II	CATG	1 cut(s)	659
HspAI	GCGC	1 cut(s)	426
Ksp22I	TGATCA	2 cut(s)	271, 315
Kzo9I	GATC	4 cut(s)	259, 271, 315, 642
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	4 cut(s)	277, 415, 484, 659
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	115, 280
MalI	GATC	4 cut(s)	261, 273, 317, 644
MboI	GATC	4 cut(s)	259, 271, 315, 642
MboII	GAAGA	4 cut(s)	172, 205, 457, 601
MluCI	AATT	2 cut(s)	243, 597
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	6 cut(s)	46, 138, 175, 337, 412, 577
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	4 cut(s)	105, 209, 236, 362
MspR9I	CCNGG	3 cut(s)	106, 227, 236
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	6 cut(s)	98, 107, 304, 356, 377, 434
NciI	CCSGG	2 cut(s)	106, 236
NdeII	GATC	4 cut(s)	259, 271, 315, 642
NlaIII	CATG	1 cut(s)	659
NlaIV	GGNNCC	4 cut(s)	30, 360, 585, 624
NmeAIII	GCCGAG	1 cut(s)	571
NmuCI	GTSAC	2 cut(s)	115, 280
OliI	CACNNNNGTG	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	326
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	14
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	7 cut(s)	94, 292, 382, 430, 499, 502, 649
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	4 cut(s)	30, 360, 585, 624
PspPI	GGNCC	4 cut(s)	4, 152, 206, 238
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	6 cut(s)	128, 224, 376, 492, 521, 557
RsaNI	GTAC	6 cut(s)	127, 223, 375, 491, 520, 556
RseI	CAYNNNNRTG	1 cut(s)	122
SatI	GCNGC	7 cut(s)	93, 291, 381, 429, 498, 501, 648
Sau3AI	GATC	4 cut(s)	259, 271, 315, 642
Sau96I	GGNCC	4 cut(s)	4, 152, 206, 238
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	3 cut(s)	106, 227, 236
SinI	GGWCC	2 cut(s)	152, 206
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	243, 597
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	4 cut(s)	93, 381, 500, 543
SspI	AATATT	1 cut(s)	71
SspMI	CTAG	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	326
StyD4I	CCNGG	3 cut(s)	104, 225, 234
StyI	CCWWGG	2 cut(s)	285, 603
TaaI	ACNGT	3 cut(s)	131, 199, 532
TasI	AATT	2 cut(s)	243, 597
TatI	WGTACW	2 cut(s)	374, 519
TauI	GCSGC	3 cut(s)	95, 383, 503
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	115, 280
TseI	GCWGC	4 cut(s)	290, 428, 497, 647
Tsp45I	GTSAC	2 cut(s)	115, 280
TspDTI	ATGAA	2 cut(s)	420, 468
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	2 cut(s)	152, 206
XapI	RAATTY	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.