Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001653.1

Orthogroup ID

OG0002647

Physical Location & Seq

Genomic Coordinates Forward (+)

140471 .. 141115

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001653.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atggctcaagaggacttgtccacgcagcaaaaccagatggcggaggaggtggaagagcagcagcggctcaagtacctgcaatttgttcaagtggctgcacttcacgccgcggtttgtttctcaaatgcttatggttatgccaaggagaaatccggtccactgaggcccggcgttgagtcagcggagggagctgtgaagactgttgttggacctgtgtatgacacgtaccaggctctccccgccaacctcctggctttcgttgatggcaaggtcgacgaatctgtgaccaggctggcttcatcccaagcaatgtcttttgctcagaaagcgccagaggcggctcgagctgctgcatcggagtttcagcaaaggagcacaagcatggctaaatcggtatactccaagtacgaaccgaaagctgagcaatgtgctgtttgtgcatggagaaagctgaatgagctacctgtggtaccgcaggtggctgagattgttgtaccgactgctgcatattgttccgaaaagtacaaccacagtgtccgttgcactgcggagaaggggtacagggtggcctcctatttgcctttggttccaacagaaaaaattgctaaggtttttggagggaatgtgcctgaacccgttcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

214

Amino Acids

23.35

Weight (kDa)

6.74

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05500 AT3G05500
fragaria_vesca	FvH4_1g23500 FvH4_6g06530
malus_domestica	MD04G1201000.v1.1 MD12G1213500.v1.1
prunus_persica	Prupe.6G321100_v2.0.a1
pyrus_communis	pycom04g17710 pycom12g19940
rosa_chinensis	RchiOBHm_Chr2g0118901 RchiOBHm_Chr3g0455691
rosa_laevigata	RLG00000018432 RLG00000018434 RLG00000025340
rosa_multiflora	Rmu_sc0001653.1_g000034 Rmu_sc0001653.1_g000036 Rmu_sc0001884.1_g000033 Rmu_sc0002883.1_g000011 Rmu_sc0026117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124600 Rroxscaffold_6G00423580 Rroxscaffold_6G00424090
rosa_rugosa	Rorug02G0219400 Rorug02G0219500 Rorug03G0009200
rosa_samantha	Rh2AG276600 Rh2AG276700 Rh2BG288300 Rh2BG288400 Rh2DG283500 Rh2DG283700 Rh2DG302800 Rh3AG068800 Rh3BG071300 Rh3CG069600 Rh3DG071300
rosa_wichuraiana	Rw2G022020 Rw2G022030 Rw3G005530 Rw3G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc36I	ACCTGC	2 cut(s)	84, 466
Acc65I	GGTACC	1 cut(s)	469
AccB1I	GGYRCC	1 cut(s)	469
AccI	GTMKAC	2 cut(s)	273, 396
AccII	CGCG	1 cut(s)	110
AciI	CCGC	9 cut(s)	41, 64, 108, 110, 182, 240, 338, 473, 548
AfaI	GTAC	7 cut(s)	74, 227, 407, 471, 495, 524, 560
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	3 cut(s)	228, 249, 287
AluBI	AGCT	5 cut(s)	191, 347, 419, 451, 460
AluI	AGCT	5 cut(s)	191, 347, 419, 451, 460
Alw21I	GWGCWC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	2 cut(s)	164, 567
ApeKI	GCWGC	7 cut(s)	25, 58, 61, 95, 347, 350, 503
Asp700I	GAANNNNTTC	1 cut(s)	636
Asp718I	GGTACC	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	3 cut(s)	155, 165, 209
AsuC2I	CCSGG	1 cut(s)	168
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	2 cut(s)	155, 209
BanI	GGYRCC	1 cut(s)	469
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	7 cut(s)	37, 70, 73, 82, 334, 337, 490
BccI	CCATC	2 cut(s)	31, 257
BciT130I	CCWGG	3 cut(s)	230, 251, 289
BcnI	CCSGG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	332
BfuAI	ACCTGC	2 cut(s)	84, 466
BlpI	GCTNAGC	1 cut(s)	420
Bme1390I	CCNGG	4 cut(s)	168, 230, 251, 289
Bme18I	GGWCC	2 cut(s)	155, 209
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	3 cut(s)	155, 165, 209
BmiI	GGNNCC	2 cut(s)	471, 588
BmrFI	CCNGG	4 cut(s)	168, 230, 251, 289
BmsI	GCATC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	108, 141
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	4 cut(s)	542, 572, 609, 639
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse3DI	GCAATG	2 cut(s)	315, 431
BseBI	CCWGG	3 cut(s)	230, 251, 289
BseDI	CCNNGG	2 cut(s)	108, 141
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	2 cut(s)	315, 431
BseMII	CTCAG	4 cut(s)	152, 335, 411, 474
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	7 cut(s)	37, 70, 73, 82, 334, 337, 490
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	166, 569
BshNI	GGYRCC	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	153, 168
BslI	CCNNNNNNNGG	1 cut(s)	40
BsnI	GGCC	2 cut(s)	166, 569
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	9 cut(s)	41, 64, 108, 110, 182, 240, 338, 473, 548
BspANI	GGCC	2 cut(s)	166, 569
BspCNI	CTCAG	4 cut(s)	153, 334, 412, 475
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	471, 588
BspMI	ACCTGC	2 cut(s)	84, 466
BspQI	GCTCTTC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	469
BsrDI	GCAATG	2 cut(s)	315, 431
BssECI	CCNNGG	2 cut(s)	108, 141
BssNAI	GTATAC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	397
Bst2UI	CCWGG	3 cut(s)	230, 251, 289
Bst4CI	ACNGT	2 cut(s)	202, 533
Bst6I	CTCTTC	1 cut(s)	48
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	5 cut(s)	161, 321, 420, 483, 606
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstNI	CCWGG	3 cut(s)	230, 251, 289
BstSCI	CCNGG	4 cut(s)	166, 228, 249, 287
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	7 cut(s)	37, 70, 73, 82, 334, 337, 490
BstV2I	GAAGAC	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstZ17I	GTATAC	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	166, 569
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	3 cut(s)	158, 538, 543
BveI	ACCTGC	2 cut(s)	84, 466
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	155, 165, 209
Cfr42I	CCGCGG	1 cut(s)	111
Csp6I	GTAC	7 cut(s)	73, 226, 406, 470, 494, 523, 559
CviAII	CATG	2 cut(s)	382, 441
CviQI	GTAC	7 cut(s)	73, 226, 406, 470, 494, 523, 559
DdeI	CTNAG	5 cut(s)	161, 321, 420, 483, 606
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	155, 209
Eco88I	CYCGRG	1 cut(s)	342
EcoRII	CCWGG	3 cut(s)	228, 249, 287
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	385, 444
FaiI	YATR	7 cut(s)	132, 138, 219, 383, 397, 442, 508
FatI	CATG	2 cut(s)	381, 440
FauI	CCCGC	1 cut(s)	247
FblI	GTMKAC	2 cut(s)	273, 396
FokI	GGATG	1 cut(s)	286
GlaI	GCGC	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	2 cut(s)	166, 569
HapII	CCGG	2 cut(s)	153, 168
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	2 cut(s)	385, 444
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	176, 278
HpaII	CCGG	2 cut(s)	153, 168
Hpy166II	GTNNAC	4 cut(s)	21, 158, 274, 397
Hpy188I	TCNGA	3 cut(s)	324, 358, 517
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	4 cut(s)	21, 158, 274, 397
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	2 cut(s)	202, 533
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	6 cut(s)	79, 98, 353, 440, 506, 543
HpyF3I	CTNAG	5 cut(s)	161, 321, 420, 483, 606
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	385, 444
HspAI	GCGC	1 cut(s)	329
KpnI	GGTACC	1 cut(s)	473
KspI	CCGCGG	1 cut(s)	111
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	188, 372
Lsp1109I	GCAGC	7 cut(s)	37, 70, 73, 82, 334, 337, 490
LweI	GCATC	1 cut(s)	362
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	65, 208
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	2 cut(s)	80, 600
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	187, 614
MnlI	CCTC	9 cut(s)	4, 37, 40, 156, 178, 257, 328, 580, 611
MroXI	GAANNNNTTC	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	3 cut(s)	64, 110, 182
MspI	CCGG	2 cut(s)	153, 168
MspR9I	CCNGG	4 cut(s)	168, 230, 251, 289
MvaI	CCWGG	3 cut(s)	230, 251, 289
MvnI	CGCG	1 cut(s)	110
NciI	CCSGG	1 cut(s)	168
NlaIII	CATG	2 cut(s)	385, 444
NlaIV	GGNNCC	2 cut(s)	471, 588
NmuCI	GTSAC	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	342
PaqCI	CACCTGC	1 cut(s)	466
PciSI	GCTCTTC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	1 cut(s)	278
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	225
Psp6I	CCWGG	3 cut(s)	228, 249, 287
PspGI	CCWGG	3 cut(s)	228, 249, 287
PspN4I	GGNNCC	2 cut(s)	471, 588
PspPI	GGNCC	3 cut(s)	155, 165, 209
PspXI	VCTCGAGB	1 cut(s)	342
RsaI	GTAC	7 cut(s)	74, 227, 407, 471, 495, 524, 560
RsaNI	GTAC	7 cut(s)	73, 226, 406, 470, 494, 523, 559
RseI	CAYNNNNRTG	1 cut(s)	380
SacII	CCGCGG	1 cut(s)	111
SalI	GTCGAC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	48
Sau96I	GGNCC	3 cut(s)	155, 165, 209
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	4 cut(s)	168, 230, 251, 289
SduI	GDGCHC	1 cut(s)	377
SfaNI	GCATC	1 cut(s)	362
Sfr274I	CTCGAG	1 cut(s)	342
Sfr303I	CCGCGG	1 cut(s)	111
SgrBI	CCGCGG	1 cut(s)	111
SinI	GGWCC	2 cut(s)	155, 209
SlaI	CTCGAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	3 cut(s)	6, 68, 342
SmoI	CTYRAG	3 cut(s)	6, 68, 342
Sse9I	AATT	2 cut(s)	80, 600
SsiI	CCGC	9 cut(s)	41, 64, 108, 110, 182, 240, 338, 473, 548
StyD4I	CCNGG	4 cut(s)	166, 228, 249, 287
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	202, 533
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	273, 343
TasI	AATT	2 cut(s)	80, 600
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	3 cut(s)	67, 110, 341
TfiI	GAWTC	1 cut(s)	278
TscAI	CASTG	3 cut(s)	165, 538, 550
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	7 cut(s)	25, 58, 61, 95, 347, 350, 503
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	3 cut(s)	165, 538, 550
VpaK11BI	GGWCC	2 cut(s)	155, 209
XhoI	CTCGAG	1 cut(s)	342
XmiI	GTMKAC	2 cut(s)	273, 396
XmnI	GAANNNNTTC	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.