Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002647

Physical Location & Seq

Genomic Coordinates Forward (+)

686395 .. 689099

Gene Structure 2705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0009200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGGAGATCCAAGTGGGGAGTGTGAGATTGAAGAAGATACTTACTGCTGTGAGTACTCTCCCCAAGTAGATAATAATACTGGCAAGGTGAGTTGGATATTGAACAAGGGATGGGGGATTGGGAAGAAACTTTTGGTGACTGGTGCCGTAATTTCTTCTGCACCGTTTGTTCTCCCACCACTTGTGGTTACATCGGCGATAGCGTTTGCCTGTTGGGTTCCTTCCGGGGTCGTGTTGGCAAGTTATGCTTGTTCTGAGAAGATTATGAGTAAGTTGCTCCCTTATAATAGTAGTAGTAGTACCACAGGAGGAGTATTAATGTCAAATAATGAGGATGAAGAAGAGTTTGAGGATGCGGAAGAAGGTGTAAAGGTGGATGTTGGTGAGTATTTGGATGTGGAGGAGAAGCCGATGTTGGATGGGATTAATGGGGTGATAATGGAAGGGTCAAGATATGAGTACAATGAGGATGCCCTGCTAGATGAGAATGCAATCAGTGATGGGGTGGATGTCTTGGTGTTCAATTTAAATGAGGGAGAGGAGGAGTTTGGAGTGACGCCAATTGAAGTGACAAGTGTAGTACCGGAAGGAAGCGAAGGTCAAGAAAAAGTAAGTGACTTTGTGGGAGGGGGGGAAATGGTGAAAGAGACGAGGGGATTGCTAGAGAAAATTAGGGATGAAGGCAATGCTGATGATGGAATGGAAATGGACAATCAGGATGTAGATGGAACTGCAGGATCAAGGAGGGATTCCATGTATATATTGCTAGATAACAATATAGTCAGTGATGAGGTGGACGTATTTGTGTCGAATGTAATTGAGGGGGAGGAGGAGATATTAATTGAAGAAATTGAGGAAAAAGAAATAGTAAATGACTTCATGGAGGATGAAGAAGTGATGAAAGAAACAAGAGGATTGCTAGAAAACATCAGGGATGCAGCTGGCAGTGCTGATAATGCAGTGGCAATGGCAGCGCTGTATGCAGGAGAAATTGAAAGAGGTGAGGAGGTCTCAAGTAATTTTGAAGAGACAGAGAGGGCAGTTGACAACAGAGTCACTGATGCTGATGTTGGCTTGGAGAAACCTACTCATACAATGGAAGCTGGGTTGCCAAAAGAAAGTGAAAAAATTGAAGAAAAGAAGCATGTGACAGGTCATGTGGGTGGAGAAGGTGCAGACTTTGCAGAGCTTCCAATTTCAAGCAGGGTCGATGTTACTACTGATGCTAAGATATCTTCTCGGAAGAGCGACATCCATTCCAATGGGGTACTTAACAAAGAGGACAAGATATGGAAACAGATTGATGCTATACGAAATATCGTCGGATATAAAGTCACACCCCATGCAAGTTATATGGAGGAACTACAGGCTCTTTACATCTTCACCGGAGTAGAGCCACCTACATCGTTCAACGACCCTCCTGATCTTGGACAAGTCGACAACAAACTCCGTTTTCTCATGTCCATAATTGGACTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

493

Amino Acids

53.86

Weight (kDa)

4.17

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05500 AT3G05500
fragaria_vesca	FvH4_1g23500 FvH4_6g06530
malus_domestica	MD04G1201000.v1.1 MD12G1213500.v1.1
prunus_persica	Prupe.6G321100_v2.0.a1
pyrus_communis	pycom04g17710 pycom12g19940
rosa_chinensis	RchiOBHm_Chr2g0118901 RchiOBHm_Chr3g0455691
rosa_laevigata	RLG00000018432 RLG00000018434 RLG00000025340
rosa_multiflora	Rmu_sc0001653.1_g000034 Rmu_sc0001653.1_g000036 Rmu_sc0001884.1_g000033 Rmu_sc0002883.1_g000011 Rmu_sc0026117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124600 Rroxscaffold_6G00423580 Rroxscaffold_6G00424090
rosa_rugosa	Rorug02G0219400 Rorug02G0219500 Rorug03G0009200
rosa_samantha	Rh2AG276600 Rh2AG276700 Rh2BG288300 Rh2BG288400 Rh2DG283500 Rh2DG283700 Rh2DG302800 Rh3AG068800 Rh3BG071300 Rh3CG069600 Rh3DG071300
rosa_wichuraiana	Rw2G022020 Rw2G022030 Rw3G005530 Rw3G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
AasI	GACNNNNNNGTC	1 cut(s)	1052
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	1437
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	2 cut(s)	2, 745
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	5 cut(s)	56, 301, 461, 582, 1269
AfeI	AGCGCT	1 cut(s)	975
AfiI	CCNNNNNNNGG	1 cut(s)	1427
AjuI	GAANNNNNNNTTGG	4 cut(s)	116, 148, 398, 430
AluBI	AGCT	3 cut(s)	941, 1103, 1189
AluI	AGCT	3 cut(s)	941, 1103, 1189
Alw26I	GTCTC	3 cut(s)	641, 1015, 1022
AlwI	GGATC	2 cut(s)	2, 745
Aor51HI	AGCGCT	1 cut(s)	975
ApeKI	GCWGC	2 cut(s)	938, 971
AseI	ATTAAT	3 cut(s)	317, 426, 839
AspLEI	GCGC	1 cut(s)	976
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	7 cut(s)	100, 148, 395, 445, 652, 1013, 1375
BanI	GGYRCC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	950, 983
BccI	CCATC	5 cut(s)	105, 413, 494, 689, 719
BceAI	ACGGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	640, 674
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	3 cut(s)	641, 1015, 1022
BfaI	CTAG	4 cut(s)	479, 662, 767, 920
BfmI	CTRYAG	2 cut(s)	732, 1364
BfoI	RGCGCY	1 cut(s)	977
BisI	GCNGC	2 cut(s)	939, 972
BlsI	GCNGC	2 cut(s)	940, 973
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	145, 219
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	6 cut(s)	343, 460, 925, 1051, 1213, 1294
BplI	GAGNNNNNCTC	2 cut(s)	995, 1027
BpuEI	CTTGAG	1 cut(s)	997
BpuMI	CCSGG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	1015
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	2 cut(s)	583, 1385
Bsc4I	CCNNNNNNNGG	1 cut(s)	1427
Bse1I	ACTGG	2 cut(s)	85, 145
Bse3DI	GCAATG	2 cut(s)	691, 972
BseDI	CCNNGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	1427
BseMI	GCAATG	2 cut(s)	691, 972
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	85, 145
BseRI	GAGGAG	7 cut(s)	324, 416, 554, 557, 842, 845, 1019
BseXI	GCAGC	2 cut(s)	950, 983
BseYI	CCCAGC	1 cut(s)	1103
BsgI	GTGCAG	2 cut(s)	144, 1194
BshNI	GGYRCC	1 cut(s)	143
BsiSI	CCGG	3 cut(s)	225, 584, 1386
BslI	CCNNNNNNNGG	1 cut(s)	1427
BsmAI	GTCTC	3 cut(s)	641, 1015, 1022
BsmBI	CGTCTC	1 cut(s)	641
BsmI	GAATGC	1 cut(s)	493
Bso31I	GGTCTC	1 cut(s)	1015
Bsp143I	GATC	3 cut(s)	7, 737, 1423
BspACI	CCGC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	145, 219
BspMAI	CTGCAG	1 cut(s)	736
BspPI	GGATC	2 cut(s)	2, 745
BspQI	GCTCTTC	1 cut(s)	1238
BspT107I	GGYRCC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	1015
BsrDI	GCAATG	2 cut(s)	691, 972
BsrI	ACTGG	2 cut(s)	85, 145
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	7, 737, 1423
BssNI	GRCGYC	1 cut(s)	557
Bst4CI	ACNGT	1 cut(s)	165
Bst6I	CTCTTC	3 cut(s)	336, 1020, 1238
BstACI	GRCGYC	1 cut(s)	557
BstAPI	GCANNNNNTGC	2 cut(s)	245, 1181
BstC8I	GCNNGC	1 cut(s)	943
BstDEI	CTNAG	2 cut(s)	255, 1227
BstH2I	RGCGCY	1 cut(s)	977
BstHHI	GCGC	1 cut(s)	976
BstKTI	GATC	3 cut(s)	10, 740, 1426
BstMAI	GTCTC	3 cut(s)	641, 1015, 1022
BstMBI	GATC	3 cut(s)	7, 737, 1423
BstMWI	GCNNNNNNNGC	6 cut(s)	245, 947, 956, 971, 980, 1181
BstNSI	RCATGY	1 cut(s)	1148
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	2 cut(s)	732, 1364
BstV1I	GCAGC	2 cut(s)	950, 983
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	1262
BstYI	RGATCY	1 cut(s)	7
BtsI	GCAGTG	2 cut(s)	952, 966
BtsIMutI	CAGTG	5 cut(s)	502, 790, 952, 966, 1056
Cac8I	GCNNGC	1 cut(s)	943
CfoI	GCGC	1 cut(s)	976
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	5 cut(s)	55, 300, 460, 581, 1268
CviAII	CATG	6 cut(s)	754, 880, 1145, 1157, 1343, 1459
CviJI	RGCY	7 cut(s)	409, 941, 1074, 1103, 1189, 1370, 1396
CviKI_1	RGCY	7 cut(s)	409, 941, 1074, 1103, 1189, 1370, 1396
CviQI	GTAC	5 cut(s)	55, 300, 460, 581, 1268
DdeI	CTNAG	2 cut(s)	255, 1227
DpnI	GATC	3 cut(s)	9, 739, 1425
DpnII	GATC	3 cut(s)	7, 737, 1423
DraI	TTTAAA	1 cut(s)	528
DrdI	GACNNNNNNGTC	1 cut(s)	1052
DseDI	GACNNNNNNGTC	1 cut(s)	1052
Eam1104I	CTCTTC	3 cut(s)	336, 1020, 1238
EarI	CTCTTC	3 cut(s)	336, 1020, 1238
Eco31I	GGTCTC	1 cut(s)	1015
Eco32I	GATATC	1 cut(s)	1233
Eco47III	AGCGCT	1 cut(s)	975
EcoRV	GATATC	1 cut(s)	1233
Esp3I	CGTCTC	1 cut(s)	641
FaeI	CATG	6 cut(s)	757, 883, 1148, 1160, 1346, 1462
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FatI	CATG	6 cut(s)	753, 879, 1144, 1156, 1342, 1458
FblI	GTMKAC	1 cut(s)	1437
Fnu4HI	GCNGC	2 cut(s)	939, 972
Fsp4HI	GCNGC	2 cut(s)	939, 972
FspBI	CTAG	4 cut(s)	479, 662, 767, 920
GlaI	GCGC	1 cut(s)	975
GluI	GCNGC	2 cut(s)	939, 972
GsaI	CCCAGC	1 cut(s)	1107
HaeII	RGCGCY	1 cut(s)	977
HapII	CCGG	3 cut(s)	225, 584, 1386
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	1 cut(s)	976
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	6 cut(s)	757, 883, 1148, 1160, 1346, 1462
Hin6I	GCGC	1 cut(s)	974
HinP1I	GCGC	1 cut(s)	974
HincII	GTYRAC	2 cut(s)	1045, 1438
HindII	GTYRAC	2 cut(s)	1045, 1438
HinfI	GANTC	2 cut(s)	749, 1053
HpaII	CCGG	3 cut(s)	225, 584, 1386
HphI	GGTGA	7 cut(s)	100, 148, 395, 445, 652, 1013, 1375
Hpy166II	GTNNAC	3 cut(s)	796, 1045, 1438
Hpy188I	TCNGA	3 cut(s)	256, 1242, 1325
Hpy188III	TCNNGA	4 cut(s)	450, 602, 716, 1421
Hpy8I	GTNNAC	3 cut(s)	796, 1045, 1438
Hpy99I	CGWCG	1 cut(s)	1325
HpyAV	CCTTC	7 cut(s)	231, 356, 437, 581, 590, 674, 1163
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	9 cut(s)	161, 491, 734, 938, 959, 983, 1175, 1184, 1346
HpyF10VI	GCNNNNNNNGC	6 cut(s)	245, 947, 956, 971, 980, 1181
HpyF3I	CTNAG	2 cut(s)	255, 1227
HpySE526I	ACGT	1 cut(s)	798
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	6 cut(s)	757, 883, 1148, 1160, 1346, 1462
HspAI	GCGC	1 cut(s)	974
Kzo9I	GATC	3 cut(s)	7, 737, 1423
LguI	GCTCTTC	1 cut(s)	1238
LmnI	GCTCC	1 cut(s)	282
Lsp1109I	GCAGC	2 cut(s)	950, 983
LweI	GCATC	6 cut(s)	343, 460, 925, 1051, 1213, 1294
MaeI	CTAG	4 cut(s)	479, 662, 767, 920
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	9 cut(s)	136, 187, 553, 568, 614, 1054, 1147, 1213, 1333
MalI	GATC	3 cut(s)	9, 739, 1425
MboI	GATC	3 cut(s)	7, 737, 1423
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	1062
MmeI	TCCRAC	3 cut(s)	74, 396, 1303
MseI	TTAA	5 cut(s)	317, 426, 527, 839, 1272
MslI	CAYNNNNRTG	2 cut(s)	1161, 1260
MspA1I	CMGCKG	1 cut(s)	941
MspI	CCGG	3 cut(s)	225, 584, 1386
MspR9I	CCNGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	493
MwoI	GCNNNNNNNGC	6 cut(s)	245, 947, 956, 971, 980, 1181
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	3 cut(s)	7, 737, 1423
NlaIII	CATG	6 cut(s)	757, 883, 1148, 1160, 1346, 1462
NlaIV	GGNNCC	2 cut(s)	145, 219
NmuCI	GTSAC	7 cut(s)	136, 553, 568, 614, 1054, 1147, 1333
NspI	RCATGY	1 cut(s)	1148
PciSI	GCTCTTC	1 cut(s)	1238
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	1 cut(s)	749
PkrI	GCNGC	2 cut(s)	940, 973
PleI	GAGTC	1 cut(s)	1061
PpsI	GAGTC	1 cut(s)	1061
PshBI	ATTAAT	3 cut(s)	317, 426, 839
PsiI	TTATAA	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	1103
PspN4I	GGNNCC	2 cut(s)	145, 219
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	941
RsaI	GTAC	5 cut(s)	56, 301, 461, 582, 1269
RsaNI	GTAC	5 cut(s)	55, 300, 460, 581, 1268
RseI	CAYNNNNRTG	2 cut(s)	1161, 1260
SalI	GTCGAC	1 cut(s)	1436
SapI	GCTCTTC	1 cut(s)	1238
SaqAI	TTAA	5 cut(s)	317, 426, 527, 839, 1272
SatI	GCNGC	2 cut(s)	939, 972
Sau3AI	GATC	3 cut(s)	7, 737, 1423
ScaI	AGTACT	1 cut(s)	56
SchI	GAGTC	1 cut(s)	1062
ScrFI	CCNGG	1 cut(s)	226
SfaNI	GCATC	6 cut(s)	343, 460, 925, 1051, 1213, 1294
SfcI	CTRYAG	2 cut(s)	732, 1364
SmiI	ATTTAAAT	1 cut(s)	528
SmiMI	CAYNNNNRTG	2 cut(s)	1161, 1260
SmlI	CTYRAG	1 cut(s)	1012
SmoI	CTYRAG	1 cut(s)	1012
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	4 cut(s)	479, 662, 767, 920
StyD4I	CCNGG	1 cut(s)	224
SwaI	ATTTAAAT	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	165
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	3 cut(s)	809, 1209, 1437
TatI	WGTACW	2 cut(s)	54, 459
TfiI	GAWTC	1 cut(s)	749
Tru1I	TTAA	5 cut(s)	317, 426, 527, 839, 1272
Tru9I	TTAA	5 cut(s)	317, 426, 527, 839, 1272
TscAI	CASTG	5 cut(s)	502, 790, 952, 966, 1063
TseFI	GTSAC	7 cut(s)	136, 553, 568, 614, 1054, 1147, 1333
TseI	GCWGC	2 cut(s)	938, 971
Tsp45I	GTSAC	7 cut(s)	136, 553, 568, 614, 1054, 1147, 1333
TspDTI	ATGAA	5 cut(s)	351, 693, 868, 903, 914
TspGWI	ACGGA	1 cut(s)	1439
TspRI	CASTG	5 cut(s)	502, 790, 952, 966, 1063
VspI	ATTAAT	3 cut(s)	317, 426, 839
XceI	RCATGY	1 cut(s)	1148
XmiI	GTMKAC	1 cut(s)	1437
XspI	CTAG	4 cut(s)	479, 662, 767, 920
ZrmI	AGTACT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.