Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002647

Physical Location & Seq

Genomic Coordinates Forward (+)

1593182 .. 1595099

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTACTCAAACGGATCTCGCTCAGCCCAAGCTTGATATGACCAAGGAGGAGAAAGAGAGGTTGAAGTATTTGCAATTCGTGCAAGCTGCTGCTGTGGAAGCTCTGCTTCGCTTTGCTCTTATTTACGCTAAGGCAAAGGACAAGTCTGGTCCTTTGAAACCTGGTGTTGAATCTGTTGAAGGAGCTGTCAAGACTGTCGTTGGTCCTGTCTACGAGAAATACCACGACGTCCCTGTTGAGGTCCTTAAATACATGGACCAGAAGGTTGATATGTCTGTGACTGAGCTTGACCGTCGTGTCCCACCAGTCGTCAAGCAAGTGTCTGCCCAAGCCATCTCCGCTGCTCAGATAGCACCCATTGTGGCACGTGCGTTGGCCTCTGAGGTTCGACGTGCTGGTGTTGTTGAAACCGCTTCTGGAATGGCTAAATCCGTCTACTCCAAGTACGAGCCTGCTGCTAAGGAGTTGTATGCAAACTATGAGCCAAAAGCAGAGCAGTGTGCCGTTTCAGCTTGGAAGAAGCTTAACCAGCTTCCTCTATTCCCAAGGCTGGCTCAAGTTGCTGTACCAACAGCTGCTTTCTGCTCTGAGAAGTACAATGATACTGTGGTTAAGGCTGCAGAGAAAGGGTACAGAGTCACATCGTACATGCCATTGGTTCCAACAGAGAGGATCTCAAAAATCTTCGCTGAGGAGAAAGCTGAGACCGAGCCTTTGGAGTTCCATCCACTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005811 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0016043 GO:0019915 GO:0032502 GO:0033036 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0050789 GO:0051179 GO:0051235 GO:0065007 GO:0065008 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

246

Amino Acids

27.19

Weight (kDa)

8.31

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	17 - 159	7e-51	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05500 AT3G05500
fragaria_vesca	FvH4_1g23500 FvH4_6g06530
malus_domestica	MD04G1201000.v1.1 MD12G1213500.v1.1
prunus_persica	Prupe.6G321100_v2.0.a1
pyrus_communis	pycom04g17710 pycom12g19940
rosa_chinensis	RchiOBHm_Chr2g0118901 RchiOBHm_Chr3g0455691
rosa_laevigata	RLG00000018432 RLG00000018434 RLG00000025340
rosa_multiflora	Rmu_sc0001653.1_g000034 Rmu_sc0001653.1_g000036 Rmu_sc0001884.1_g000033 Rmu_sc0002883.1_g000011 Rmu_sc0026117.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124600 Rroxscaffold_6G00423580 Rroxscaffold_6G00424090
rosa_rugosa	Rorug02G0219400 Rorug02G0219500 Rorug03G0009200
rosa_samantha	Rh2AG276600 Rh2AG276700 Rh2BG288300 Rh2BG288400 Rh2DG283500 Rh2DG283700 Rh2DG302800 Rh3AG068800 Rh3BG071300 Rh3CG069600 Rh3DG071300
rosa_wichuraiana	Rw2G022020 Rw2G022030 Rw3G005530 Rw3G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AatII	GACGTC	1 cut(s)	234
AccI	GTMKAC	2 cut(s)	213, 438
AciI	CCGC	2 cut(s)	342, 414
AclWI	GGATC	2 cut(s)	24, 683
AcvI	CACGTG	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	5 cut(s)	449, 570, 599, 635, 650
AfiI	CCNNNNNNNGG	2 cut(s)	241, 553
AgsI	TTSAA	5 cut(s)	67, 160, 173, 182, 410
AjiI	CACGTC	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	2 cut(s)	24, 683
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	6 cut(s)	89, 92, 344, 458, 578, 620
ArsI	GACNNNNNNTTYG	4 cut(s)	131, 163, 700, 732
AspS9I	GGNCC	4 cut(s)	152, 206, 244, 259
AvaII	GGWCC	4 cut(s)	152, 206, 244, 259
BaeI	ACNNNNGTAYC	2 cut(s)	597, 630
BbrPI	CACGTG	1 cut(s)	371
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	6 cut(s)	76, 79, 331, 445, 565, 607
BccI	CCATC	2 cut(s)	344, 735
BceAI	ACGGC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciT130I	CCWGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	701
BfmI	CTRYAG	1 cut(s)	621
BisI	GCNGC	6 cut(s)	90, 93, 345, 459, 579, 621
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	6 cut(s)	91, 94, 346, 460, 580, 622
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	4 cut(s)	152, 206, 244, 259
BmgBI	CACGTC	1 cut(s)	395
BmgT120I	GGNCC	4 cut(s)	152, 206, 244, 259
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
Bpu10I	CCTNAGC	3 cut(s)	132, 462, 693
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	543
BsaAI	YACGTR	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	2 cut(s)	45, 548
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 553
Bse1I	ACTGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	45, 548
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	2 cut(s)	241, 553
BseMII	CTCAG	7 cut(s)	38, 276, 362, 375, 582, 684, 696
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	2 cut(s)	65, 710
BseXI	GCAGC	6 cut(s)	76, 79, 331, 445, 565, 607
BshFI	GGCC	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	218, 287
BslI	CCNNNNNNNGG	2 cut(s)	241, 553
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	2 cut(s)	218, 287
BsnI	GGCC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	701
Bsp143I	GATC	2 cut(s)	16, 675
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	2 cut(s)	342, 414
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	7 cut(s)	37, 277, 361, 376, 583, 685, 697
BspLI	GGNNCC	1 cut(s)	663
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	2 cut(s)	24, 683
BspTNI	GGTCTC	1 cut(s)	701
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	45, 548
BssMI	GATC	2 cut(s)	16, 675
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	2 cut(s)	45, 548
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	3 cut(s)	199, 296, 610
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	87, 456, 555
BstDEI	CTNAG	9 cut(s)	24, 132, 285, 348, 384, 462, 591, 693, 705
BstF5I	GGATG	1 cut(s)	727
BstKTI	GATC	2 cut(s)	19, 678
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	2 cut(s)	16, 675
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 101, 341, 353, 512, 532, 563
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	6 cut(s)	76, 79, 331, 445, 565, 607
BstX2I	RGATCY	2 cut(s)	16, 675
BstYI	RGATCY	2 cut(s)	16, 675
BsuRI	GGCC	1 cut(s)	380
BtrI	CACGTC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	727
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	1 cut(s)	506
Cac8I	GCNNGC	3 cut(s)	87, 456, 555
Cfr13I	GGNCC	4 cut(s)	152, 206, 244, 259
CsiI	ACCWGGT	1 cut(s)	163
Csp6I	GTAC	5 cut(s)	448, 569, 598, 634, 649
CviAII	CATG	2 cut(s)	256, 652
CviQI	GTAC	5 cut(s)	448, 569, 598, 634, 649
DdeI	CTNAG	9 cut(s)	24, 132, 285, 348, 384, 462, 591, 693, 705
DpnI	GATC	2 cut(s)	18, 677
DpnII	GATC	2 cut(s)	16, 675
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eco130I	CCWWGG	2 cut(s)	45, 548
Eco31I	GGTCTC	1 cut(s)	701
Eco47I	GGWCC	4 cut(s)	152, 206, 244, 259
Eco72I	CACGTG	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	45, 548
ErhI	CCWWGG	2 cut(s)	45, 548
FaeI	CATG	2 cut(s)	259, 655
FaiI	YATR	6 cut(s)	41, 257, 275, 474, 483, 653
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FaqI	GGGAC	2 cut(s)	218, 287
FatI	CATG	2 cut(s)	255, 651
FblI	GTMKAC	2 cut(s)	213, 438
Fnu4HI	GCNGC	6 cut(s)	90, 93, 345, 459, 579, 621
FokI	GGATG	1 cut(s)	714
Fsp4HI	GCNGC	6 cut(s)	90, 93, 345, 459, 579, 621
GluI	GCNGC	6 cut(s)	90, 93, 345, 459, 579, 621
HaeIII	GGCC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	259, 655
HindIII	AAGCTT	2 cut(s)	32, 524
HinfI	GANTC	2 cut(s)	173, 639
Hpy166II	GTNNAC	2 cut(s)	214, 439
Hpy188I	TCNGA	3 cut(s)	351, 385, 592
Hpy188III	TCNNGA	2 cut(s)	193, 420
Hpy8I	GTNNAC	2 cut(s)	214, 439
Hpy99I	CGWCG	3 cut(s)	233, 300, 396
HpyAV	CCTTC	2 cut(s)	176, 259
HpyCH4III	ACNGT	3 cut(s)	199, 296, 610
HpyCH4IV	ACGT	3 cut(s)	231, 370, 394
HpyCH4V	TGCA	4 cut(s)	76, 85, 476, 623
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 101, 341, 353, 512, 532, 563
HpyF3I	CTNAG	9 cut(s)	24, 132, 285, 348, 384, 462, 591, 693, 705
HpySE526I	ACGT	3 cut(s)	231, 370, 394
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	259, 655
Kzo9I	GATC	2 cut(s)	16, 675
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	6 cut(s)	76, 79, 331, 445, 565, 607
MabI	ACCWGGT	1 cut(s)	163
MaeII	ACGT	3 cut(s)	231, 370, 394
MaeIII	GTNAC	2 cut(s)	280, 640
MalI	GATC	2 cut(s)	18, 677
MboI	GATC	2 cut(s)	16, 675
MboII	GAAGA	2 cut(s)	532, 679
MflI	RGATCY	2 cut(s)	16, 675
MluCI	AATT	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	648
MmeI	TCCRAC	1 cut(s)	689
MnlI	CCTC	8 cut(s)	43, 54, 235, 379, 391, 549, 666, 688
MseI	TTAA	3 cut(s)	249, 528, 615
MspA1I	CMGCKG	2 cut(s)	344, 578
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	7 cut(s)	82, 101, 341, 353, 512, 532, 563
NdeII	GATC	2 cut(s)	16, 675
NlaIII	CATG	2 cut(s)	259, 655
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	2 cut(s)	280, 640
NspI	RCATGY	1 cut(s)	655
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	6 cut(s)	91, 94, 346, 460, 580, 622
PleI	GAGTC	1 cut(s)	647
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	647
Ppu21I	YACGTR	1 cut(s)	371
PpuMI	RGGWCCY	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	163
PspCI	CACGTG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	4 cut(s)	152, 206, 244, 259
PspPPI	RGGWCCY	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	625
PsuI	RGATCY	2 cut(s)	16, 675
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	5 cut(s)	449, 570, 599, 635, 650
RsaNI	GTAC	5 cut(s)	448, 569, 598, 634, 649
SaqAI	TTAA	3 cut(s)	249, 528, 615
SatI	GCNGC	6 cut(s)	90, 93, 345, 459, 579, 621
Sau3AI	GATC	2 cut(s)	16, 675
Sau96I	GGNCC	4 cut(s)	152, 206, 244, 259
SchI	GAGTC	1 cut(s)	648
ScrFI	CCNGG	1 cut(s)	165
SexAI	ACCWGGT	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	4 cut(s)	152, 206, 244, 259
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	2 cut(s)	342, 414
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	2 cut(s)	45, 548
TaaI	ACNGT	3 cut(s)	199, 296, 610
TaiI	ACGT	3 cut(s)	234, 373, 397
TaqI	TCGA	1 cut(s)	391
TaqII	GACCGA	1 cut(s)	725
TasI	AATT	1 cut(s)	77
TatI	WGTACW	1 cut(s)	597
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	3 cut(s)	249, 528, 615
Tru9I	TTAA	3 cut(s)	249, 528, 615
TscAI	CASTG	1 cut(s)	506
TseFI	GTSAC	2 cut(s)	280, 640
TseI	GCWGC	6 cut(s)	89, 92, 344, 458, 578, 620
Tsp45I	GTSAC	2 cut(s)	280, 640
TspGWI	ACGGA	2 cut(s)	29, 424
TspRI	CASTG	1 cut(s)	506
VpaK11BI	GGWCC	4 cut(s)	152, 206, 244, 259
XceI	RCATGY	1 cut(s)	655
XmiI	GTMKAC	2 cut(s)	213, 438
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.