Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007367

Physical Location & Seq

Genomic Coordinates Reverse (-)

1009174 .. 1010916

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0012900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGATCTGCAGCAGTTACCGGAGGGTTGCATAGCCAACATAGTATCGTTGACGACTCCTAAAGATGCCTGCCGCCTGTCGTTGCTCTGTAAGATTTTCAAGTCTGCGGCGGAATCCGACGCCGTTTGGGACAAGTTCCTTCCGCCTGAGACACCCACGATCCTGTCCCAGTCTGGCGAATCTGGATTATTGGCTGCCAAATCCAAGAAGGAGCTTTACCTCGCTCTCTGCAACAAACCTCTGCTCATCGACGACAGTAAATTGAGCTTTTCACTGGACAAATGGAGTGGGAAAAAATGTTACATGATATCTGCAAGAGAGCTGGGTATTGTCTGGGGCGATACTCCCCAGTATTGGAGATGGACTTCTCATCCTGAATCCAGGTTTCAGGAGGTGGCTGAGCTTCTTGATGTTTGCTGGCTTGAAATCCATGGGAAACTTGAAACACGCTTGCTGTCCCAATCGACTCTGTACAAAGCTTACCTTGTGTTCAAGTTTACTCCAGAGGCCTTTGGATTTGATAACCTACCTGCGGAGGTCACTGTAGGTCTGGAGGGAGGAGAACATAGTAATCGGACTGTGTTTCTTCACAATGAAGGAGAGATGAACTACTCAGAAGAAGAGATGGACTACTCAGATGTAGGGATGGACTTCTCCGAAGGAGAGAGCGATGATGCCGAAGGAGAGATCAACGACTCTAAAGGACTGAGTGAAGATGCGGAAGGAGAGAGCGATGAGACCGAAGGAGAAAGCAACGGTGCTGAAGGGGAGACCCGTGACGCCGAAGTGCCTGAAGTAGTGTTCAATGACGACCGATACCAGAGGGAGAGATCCGGGTGGTTGGAGATTGAGCTGGGTGAGTTTTTTTGTGAAGGGGGAGAAGATGGGCTGTTGAAAATGCATTGTTTGGCGAATGGGGCTGGTCATTGGAAGAGTGGTCTTATTGTTCAAGGCATTGAGGTCAGACCTAAGAGTAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

36.53

Weight (kDa)

4.47

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	3 - 44	1.4e-06	F-box domain
PP2	PF14299	98 - 323	1.6e-52	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05625 AT3G05625
fragaria_vesca	FvH4_6g06920 FvH4_6g06920
malus_domestica	MD04G1197600.v1.1
prunus_persica	Prupe.6G318000_v2.0.a1 Prupe.6G318000_v2.0.a1
pyrus_communis	pycom04g17490
rosa_chinensis	RchiOBHm_Chr1g0332671 RchiOBHm_Chr3g0456451
rosa_laevigata	RLG00000025304
rosa_multiflora	Rmu_sc0002607.1_g000017
rosa_roxburghii	Rroxscaffold_6G00422740
rosa_rugosa	Rorug02G0219500 Rorug03G0012800 Rorug03G0012900 Rorug03G0013000 Rorug03G0013100
rosa_samantha	Rh1DG132400 Rh3AG073500 Rh3BG075400 Rh3CG074900 Rh3DG076700
rosa_wichuraiana	Rw0G012240 Rw3G006300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	538
AciI	CCGC	6 cut(s)	73, 107, 110, 143, 533, 719
AclWI	GGATC	3 cut(s)	12, 154, 825
AcuI	CTGAAG	2 cut(s)	783, 813
AcyI	GRCGYC	2 cut(s)	120, 780
AfaI	GTAC	2 cut(s)	473, 980
AfiI	CCNNNNNNNGG	2 cut(s)	354, 532
AgsI	TTSAA	7 cut(s)	100, 425, 443, 493, 805, 895, 950
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	6 cut(s)	214, 267, 322, 403, 479, 853
AluI	AGCT	6 cut(s)	214, 267, 322, 403, 479, 853
Alw26I	GTCTC	3 cut(s)	143, 731, 764
AlwI	GGATC	3 cut(s)	12, 154, 825
AoxI	GGCC	1 cut(s)	507
ApeKI	GCWGC	2 cut(s)	10, 194
AsuC2I	CCSGG	1 cut(s)	835
AsuHPI	GGTGA	1 cut(s)	869
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BbvI	GCAGC	2 cut(s)	22, 181
BccI	CCATC	4 cut(s)	354, 619, 640, 878
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	835
BcoDI	GTCTC	3 cut(s)	143, 731, 764
BfaI	CTAG	1 cut(s)	982
BfmI	CTRYAG	2 cut(s)	8, 543
BfuAI	ACCTGC	1 cut(s)	538
BisI	GCNGC	4 cut(s)	11, 73, 108, 195
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	4 cut(s)	12, 74, 109, 196
BmcAI	AGTACT	1 cut(s)	980
Bme1390I	CCNGG	2 cut(s)	382, 835
BmrFI	CCNGG	2 cut(s)	382, 835
BmrI	ACTGGG	2 cut(s)	163, 343
BmsI	GCATC	3 cut(s)	55, 664, 706
BmuI	ACTGGG	2 cut(s)	163, 343
BpmI	CTGGAG	2 cut(s)	486, 572
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	835
BsaHI	GRCGYC	2 cut(s)	120, 780
BsaI	GGTCTC	2 cut(s)	731, 764
BsaJI	CCNNGG	1 cut(s)	430
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	354, 532
Bse1I	ACTGG	3 cut(s)	169, 279, 349
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	2 cut(s)	370, 651
BseLI	CCNNNNNNNGG	2 cut(s)	354, 532
BseMII	CTCAG	5 cut(s)	138, 390, 627, 648, 698
BseNI	ACTGG	3 cut(s)	169, 279, 349
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	2 cut(s)	22, 181
BseYI	CCCAGC	2 cut(s)	322, 853
Bsh1285I	CGRYCG	1 cut(s)	814
BshFI	GGCC	1 cut(s)	509
BsiEI	CGRYCG	1 cut(s)	814
BsiSI	CCGG	2 cut(s)	20, 834
BslFI	GGGAC	3 cut(s)	143, 151, 442
BslI	CCNNNNNNNGG	2 cut(s)	354, 532
BsmAI	GTCTC	3 cut(s)	143, 731, 764
BsmFI	GGGAC	3 cut(s)	143, 151, 442
BsnI	GGCC	1 cut(s)	509
Bso31I	GGTCTC	2 cut(s)	731, 764
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	4 cut(s)	4, 159, 687, 830
Bsp1720I	GCTNAGC	1 cut(s)	399
Bsp19I	CCATGG	1 cut(s)	430
BspACI	CCGC	6 cut(s)	73, 107, 110, 143, 533, 719
BspANI	GGCC	1 cut(s)	509
BspCNI	CTCAG	5 cut(s)	139, 391, 626, 647, 699
BspMAI	CTGCAG	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	3 cut(s)	12, 154, 825
BspTNI	GGTCTC	2 cut(s)	731, 764
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	3 cut(s)	169, 279, 349
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	4 cut(s)	4, 159, 687, 830
BssNI	GRCGYC	2 cut(s)	120, 780
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	4 cut(s)	257, 544, 580, 758
Bst6I	CTCTTC	2 cut(s)	615, 926
BstACI	GRCGYC	2 cut(s)	120, 780
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	3 cut(s)	70, 419, 452
BstDEI	CTNAG	6 cut(s)	147, 399, 613, 634, 707, 969
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	2 cut(s)	370, 651
BstKTI	GATC	4 cut(s)	7, 162, 690, 833
BstMAI	GTCTC	3 cut(s)	143, 731, 764
BstMBI	GATC	4 cut(s)	4, 159, 687, 830
BstMCI	CGRYCG	1 cut(s)	814
BstMWI	GCNNNNNNNGC	1 cut(s)	917
BstNI	CCWGG	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	380, 833
BstSFI	CTRYAG	2 cut(s)	8, 543
BstV1I	GCAGC	2 cut(s)	22, 181
BstX2I	RGATCY	2 cut(s)	4, 830
BstYI	RGATCY	2 cut(s)	4, 830
BsuRI	GGCC	1 cut(s)	509
BtgI	CCRYGG	1 cut(s)	430
BtgZI	GCGATG	2 cut(s)	684, 747
BtsCI	GGATG	2 cut(s)	370, 651
BtsIMutI	CAGTG	2 cut(s)	272, 540
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	3 cut(s)	70, 419, 452
CseI	GACGC	2 cut(s)	128, 788
Csp6I	GTAC	2 cut(s)	472, 979
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	2 cut(s)	304, 431
CviQI	GTAC	2 cut(s)	472, 979
DdeI	CTNAG	6 cut(s)	147, 399, 613, 634, 707, 969
DpnI	GATC	4 cut(s)	6, 161, 689, 832
DpnII	GATC	4 cut(s)	4, 159, 687, 830
Eam1104I	CTCTTC	2 cut(s)	615, 926
EarI	CTCTTC	2 cut(s)	615, 926
EciI	GGCGGA	2 cut(s)	125, 132
Eco130I	CCWWGG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	509
Eco31I	GGTCTC	2 cut(s)	731, 764
Eco32I	GATATC	1 cut(s)	309
Eco57I	CTGAAG	2 cut(s)	783, 813
EcoRII	CCWGG	1 cut(s)	380
EcoRV	GATATC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	2 cut(s)	307, 434
FaiI	YATR	5 cut(s)	32, 41, 305, 432, 567
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	3 cut(s)	143, 151, 442
FatI	CATG	2 cut(s)	303, 430
Fnu4HI	GCNGC	4 cut(s)	11, 73, 108, 195
FokI	GGATG	2 cut(s)	357, 658
Fsp4HI	GCNGC	4 cut(s)	11, 73, 108, 195
FspBI	CTAG	1 cut(s)	982
GluI	GCNGC	4 cut(s)	11, 73, 108, 195
GsaI	CCCAGC	2 cut(s)	326, 857
GsuI	CTGGAG	2 cut(s)	486, 572
HaeIII	GGCC	1 cut(s)	509
HapII	CCGG	2 cut(s)	20, 834
HgaI	GACGC	2 cut(s)	128, 788
Hin1I	GRCGYC	2 cut(s)	120, 780
Hin1II	CATG	2 cut(s)	307, 434
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	6 cut(s)	55, 113, 179, 377, 466, 695
HpaII	CCGG	2 cut(s)	20, 834
HphI	GGTGA	1 cut(s)	869
Hpy166II	GTNNAC	2 cut(s)	51, 498
Hpy188I	TCNGA	6 cut(s)	118, 576, 616, 637, 658, 965
Hpy188III	TCNNGA	6 cut(s)	183, 374, 389, 407, 503, 551
Hpy8I	GTNNAC	2 cut(s)	51, 498
Hpy99I	CGWCG	2 cut(s)	122, 254
HpyAV	CCTTC	9 cut(s)	149, 202, 590, 653, 674, 716, 737, 758, 866
HpyCH4III	ACNGT	4 cut(s)	257, 544, 580, 758
HpyCH4V	TGCA	5 cut(s)	10, 30, 231, 314, 901
HpyF10VI	GCNNNNNNNGC	1 cut(s)	917
HpyF3I	CTNAG	6 cut(s)	147, 399, 613, 634, 707, 969
Hsp92I	GRCGYC	2 cut(s)	120, 780
Hsp92II	CATG	2 cut(s)	307, 434
Kzo9I	GATC	4 cut(s)	4, 159, 687, 830
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	2 cut(s)	22, 181
LweI	GCATC	3 cut(s)	55, 664, 706
MaeI	CTAG	1 cut(s)	982
MaeIII	GTNAC	4 cut(s)	15, 299, 538, 776
MalI	GATC	4 cut(s)	6, 161, 689, 832
MboI	GATC	4 cut(s)	4, 159, 687, 830
MboII	GAAGA	6 cut(s)	578, 629, 632, 725, 893, 943
MflI	RGATCY	2 cut(s)	4, 830
MluCI	AATT	1 cut(s)	260
MlyI	GAGTC	3 cut(s)	49, 460, 689
MmeI	TCCRAC	2 cut(s)	141, 822
Mph1103I	ATGCAT	1 cut(s)	903
MspI	CCGG	2 cut(s)	20, 834
MspR9I	CCNGG	2 cut(s)	382, 835
MvaI	CCWGG	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	917
NciI	CCSGG	1 cut(s)	835
NcoI	CCATGG	1 cut(s)	430
NdeII	GATC	4 cut(s)	4, 159, 687, 830
NlaIII	CATG	2 cut(s)	307, 434
NmuCI	GTSAC	2 cut(s)	538, 776
NsiI	ATGCAT	1 cut(s)	903
PceI	AGGCCT	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	113, 179, 377
PkrI	GCNGC	4 cut(s)	12, 74, 109, 196
PleI	GAGTC	3 cut(s)	49, 460, 689
PpsI	GAGTC	3 cut(s)	49, 460, 689
Psp6I	CCWGG	1 cut(s)	380
PspFI	CCCAGC	2 cut(s)	322, 853
PspGI	CCWGG	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	4, 830
RsaI	GTAC	2 cut(s)	473, 980
RsaNI	GTAC	2 cut(s)	472, 979
SatI	GCNGC	4 cut(s)	11, 73, 108, 195
Sau3AI	GATC	4 cut(s)	4, 159, 687, 830
ScaI	AGTACT	1 cut(s)	980
SchI	GAGTC	3 cut(s)	49, 460, 689
ScrFI	CCNGG	2 cut(s)	382, 835
SfaNI	GCATC	3 cut(s)	55, 664, 706
SfcI	CTRYAG	2 cut(s)	8, 543
Sse9I	AATT	1 cut(s)	260
SseBI	AGGCCT	1 cut(s)	509
SsiI	CCGC	6 cut(s)	73, 107, 110, 143, 533, 719
SspMI	CTAG	1 cut(s)	982
StuI	AGGCCT	1 cut(s)	509
StyD4I	CCNGG	2 cut(s)	380, 833
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	4 cut(s)	257, 544, 580, 758
TaqI	TCGA	2 cut(s)	249, 464
TaqII	GACCGA	2 cut(s)	755, 828
TasI	AATT	1 cut(s)	260
TatI	WGTACW	2 cut(s)	471, 978
TauI	GCSGC	2 cut(s)	75, 110
TfiI	GAWTC	3 cut(s)	113, 179, 377
TscAI	CASTG	2 cut(s)	279, 547
TseFI	GTSAC	2 cut(s)	538, 776
TseI	GCWGC	2 cut(s)	10, 194
Tsp45I	GTSAC	2 cut(s)	538, 776
TspDTI	ATGAA	2 cut(s)	609, 620
TspRI	CASTG	2 cut(s)	279, 547
XspI	CTAG	1 cut(s)	982
ZrmI	AGTACT	1 cut(s)	980
Zsp2I	ATGCAT	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.