Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007367

Physical Location & Seq

Genomic Coordinates Forward (+)

5913891 .. 5916741

Gene Structure 2851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG074900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTATGGCTCCCAACCTCAAACCCACCATTTCCATGTCCCTCACTCCATTCCTAACCTCTCCTCCGTTTTCACTCAAAACCCAGAACAGCTCACTATTCTTTAACACAATCCCTTCAACAATTCAGACACATAAAACCTCATTTCCACTGAGAACCTGCACTAACTCTCAATTCTGTAGCACCAGAAGACTGTTCCTTCCCTCAGTTTCTGGCATCTGGGATGCCATCACCGGCGGCAACAATCCCCGTGAAGCCGTTGCCGCAATCCGAGGTGGAATGGTTCTGTTTAGACAGGGTGATGTTGCAGGGTCTGTAGCAGAATTTGACAAGGCAATTGAGCTTGATCCTCGCCAAAAGGCATATCTTTGGCAAAGGGGGCTGTCACTTTACTATCTTGATAGATTTGAAGAAGGGGCAGAGCAGTTCCGAATAGATGTTGCCCAGAATCCAAATGATACAGAGGAGTCCATTTGGTGCTTTCTCTGTGAAGCTCAATTATATGGAGTTAAGGAAGCAAGAGAACGGTTTCTTGAGGTTGGCCGAGATCCAAGACCTGTCATGAGAGAAGCCTATAACATGTTTAAAGATGGTGGTGATCCAGAAAAGCTTGCTGATGCATTTAAAAATGGCCGAGACAGTGATTATTTCTATGCTTCTCTATATGCTGGCCTTTACTATGAAGCTCAGAAGAAACTGGATGAGGCCAAAGTTCACATCCTTGCTGCTTATCAGTCTTCCTATGGACAAAGATCTGATGATTACATGGCCTCTCTTGCCAAAGTTCACTGTGTTTGTCGAAATTGGAGATCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.84

Weight (kDa)

6.35

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05625 AT3G05625
fragaria_vesca	FvH4_6g06920 FvH4_6g06920
malus_domestica	MD04G1197600.v1.1
prunus_persica	Prupe.6G318000_v2.0.a1 Prupe.6G318000_v2.0.a1
pyrus_communis	pycom04g17490
rosa_chinensis	RchiOBHm_Chr1g0332671 RchiOBHm_Chr3g0456451
rosa_laevigata	RLG00000025304
rosa_multiflora	Rmu_sc0002607.1_g000017
rosa_roxburghii	Rroxscaffold_6G00422740
rosa_rugosa	Rorug02G0219500 Rorug03G0012800 Rorug03G0012900 Rorug03G0013000 Rorug03G0013100
rosa_samantha	Rh1DG132400 Rh3AG073500 Rh3BG075400 Rh3CG074900 Rh3DG076700
rosa_wichuraiana	Rw0G012240 Rw3G006300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AciI	CCGC	2 cut(s)	237, 264
AclWI	GGATC	3 cut(s)	341, 542, 593
AcoI	YGGCCR	2 cut(s)	541, 631
AcsI	RAATTY	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	2 cut(s)	120, 410
AluBI	AGCT	5 cut(s)	93, 343, 494, 610, 686
AluI	AGCT	5 cut(s)	93, 343, 494, 610, 686
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	3 cut(s)	341, 542, 593
AlwNI	CAGNNNCTG	2 cut(s)	212, 314
AoxI	GGCC	5 cut(s)	541, 631, 670, 705, 768
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	528
AsuHPI	GGTGA	3 cut(s)	223, 311, 608
BbsI	GAAGAC	2 cut(s)	196, 729
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	2 cut(s)	236, 584
BceAI	ACGGC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	630
BfmI	CTRYAG	2 cut(s)	178, 315
BfuAI	ACCTGC	1 cut(s)	167
BglII	AGATCT	2 cut(s)	752, 809
BisI	GCNGC	3 cut(s)	238, 264, 726
BlsI	GCNGC	3 cut(s)	239, 265, 727
BmiI	GGNNCC	1 cut(s)	12
BmsI	GCATC	3 cut(s)	214, 225, 607
BpiI	GAAGAC	2 cut(s)	196, 729
BpuEI	CTTGAG	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	702
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	3 cut(s)	229, 706, 717
BseMII	CTCAG	3 cut(s)	143, 219, 701
BseNI	ACTGG	1 cut(s)	702
BseRI	GAGGAG	2 cut(s)	54, 479
BseXI	GCAGC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	5 cut(s)	543, 633, 672, 707, 770
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	630
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	5 cut(s)	543, 633, 672, 707, 770
Bsp143I	GATC	5 cut(s)	346, 547, 598, 752, 809
BspACI	CCGC	2 cut(s)	237, 264
BspANI	GGCC	5 cut(s)	543, 633, 672, 707, 770
BspCNI	CTCAG	3 cut(s)	144, 218, 700
BspHI	TCATGA	1 cut(s)	561
BspLI	GGNNCC	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	3 cut(s)	341, 542, 593
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	702
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	5 cut(s)	346, 547, 598, 752, 809
Bst4CI	ACNGT	4 cut(s)	195, 528, 641, 791
BstC8I	GCNNGC	2 cut(s)	612, 670
BstDEI	CTNAG	3 cut(s)	152, 205, 687
BstF5I	GGATG	3 cut(s)	229, 706, 717
BstKTI	GATC	5 cut(s)	349, 550, 601, 755, 812
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	5 cut(s)	346, 547, 598, 752, 809
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 379, 776
BstNSI	RCATGY	1 cut(s)	583
BstSFI	CTRYAG	2 cut(s)	178, 315
BstV1I	GCAGC	1 cut(s)	712
BstV2I	GAAGAC	2 cut(s)	196, 729
BstX2I	RGATCY	3 cut(s)	547, 752, 809
BstYI	RGATCY	3 cut(s)	547, 752, 809
BsuRI	GGCC	5 cut(s)	543, 633, 672, 707, 770
BtsCI	GGATG	3 cut(s)	229, 706, 717
BtsIMutI	CAGTG	3 cut(s)	149, 646, 787
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	612, 670
CaiI	CAGNNNCTG	2 cut(s)	212, 314
CciI	TCATGA	1 cut(s)	561
Cfr10I	RCCGGY	1 cut(s)	233
CviAII	CATG	4 cut(s)	37, 562, 580, 766
DdeI	CTNAG	3 cut(s)	152, 205, 687
DpnI	GATC	5 cut(s)	348, 549, 600, 754, 811
DpnII	GATC	5 cut(s)	346, 547, 598, 752, 809
DraI	TTTAAA	2 cut(s)	586, 625
EaeI	YGGCCR	2 cut(s)	541, 631
EcoT22I	ATGCAT	1 cut(s)	622
FaeI	CATG	4 cut(s)	40, 565, 583, 769
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	4 cut(s)	36, 561, 579, 765
Fnu4HI	GCNGC	3 cut(s)	238, 264, 726
FokI	GGATG	3 cut(s)	236, 704, 713
Fsp4HI	GCNGC	3 cut(s)	238, 264, 726
GluI	GCNGC	3 cut(s)	238, 264, 726
HaeIII	GGCC	5 cut(s)	543, 633, 672, 707, 770
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	4 cut(s)	40, 565, 583, 769
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	2 cut(s)	448, 467
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	3 cut(s)	223, 311, 608
Hpy166II	GTNNAC	2 cut(s)	715, 787
Hpy188I	TCNGA	6 cut(s)	129, 272, 431, 690, 757, 814
Hpy188III	TCNNGA	4 cut(s)	398, 533, 562, 602
Hpy8I	GTNNAC	2 cut(s)	715, 787
HpyAV	CCTTC	3 cut(s)	126, 209, 407
HpyCH4III	ACNGT	4 cut(s)	195, 528, 641, 791
HpyCH4V	TGCA	3 cut(s)	162, 308, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 379, 776
HpyF3I	CTNAG	3 cut(s)	152, 205, 687
Hsp92II	CATG	4 cut(s)	40, 565, 583, 769
Kzo9I	GATC	5 cut(s)	346, 547, 598, 752, 809
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	3 cut(s)	214, 225, 607
MaeIII	GTNAC	1 cut(s)	384
MalI	GATC	5 cut(s)	348, 549, 600, 754, 811
MboI	GATC	5 cut(s)	346, 547, 598, 752, 809
MboII	GAAGA	4 cut(s)	201, 422, 703, 729
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	3 cut(s)	547, 752, 809
MluCI	AATT	6 cut(s)	123, 173, 323, 336, 497, 802
MlyI	GAGTC	1 cut(s)	476
Mph1103I	ATGCAT	1 cut(s)	622
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	4 cut(s)	105, 510, 585, 624
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	263, 379, 776
NdeII	GATC	5 cut(s)	346, 547, 598, 752, 809
NlaIII	CATG	4 cut(s)	40, 565, 583, 769
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	2 cut(s)	569, 659
NmuCI	GTSAC	1 cut(s)	384
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	1 cut(s)	583
PagI	TCATGA	1 cut(s)	561
PciI	ACATGT	1 cut(s)	579
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	239, 265, 727
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PscI	ACATGT	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	12
PstNI	CAGNNNCTG	2 cut(s)	212, 314
PsuI	RGATCY	3 cut(s)	547, 752, 809
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	4 cut(s)	105, 510, 585, 624
SatI	GCNGC	3 cut(s)	238, 264, 726
Sau3AI	GATC	5 cut(s)	346, 547, 598, 752, 809
SchI	GAGTC	1 cut(s)	476
SfaNI	GCATC	3 cut(s)	214, 225, 607
SfcI	CTRYAG	2 cut(s)	178, 315
SgrAI	CRCCGGYG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	6 cut(s)	123, 173, 323, 336, 497, 802
SsiI	CCGC	2 cut(s)	237, 264
TaaI	ACNGT	4 cut(s)	195, 528, 641, 791
TaqI	TCGA	1 cut(s)	799
TasI	AATT	6 cut(s)	123, 173, 323, 336, 497, 802
TauI	GCSGC	2 cut(s)	240, 266
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	4 cut(s)	105, 510, 585, 624
Tru9I	TTAA	4 cut(s)	105, 510, 585, 624
TscAI	CASTG	3 cut(s)	156, 646, 794
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	1 cut(s)	696
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	3 cut(s)	156, 646, 794
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	528
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.