Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002607.1

Orthogroup ID

OG0007367

Physical Location & Seq

Genomic Coordinates Reverse (-)

100902 .. 105413

Gene Structure 4512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002607.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atggctatggctcccaacctcaaacccaccatttccatgtccctcactccattcctaacctctcctccgttttcactcaaaacccagaacagctcactattctttaacacaatcccttcaacaattcagacacataaaacctcatttccactaagaacctgcactaactctcaattctgtagcaccagaagactgttccttccctcagtttctggcatctgggatgccatcaccggcggcaacaatccccgtgaagccgttgccgcaatccgaggtggaatggttctgtttagacagggtgatgttgcagggtctgtagcagaatttgacaaggcaattgagcttgatcctcgccaaaaggcatatctttggcaaagggggctgtcactttactatcttgatagatttgaagaaggggcagagcagttccgaatagatgttgcccagaatccaaatgatacagaggagtccatttggtgctttctctgtgaagctcaattatatggagtcaaggaagcaagggaacggtttcttgaggttggtcaagatccaagacctgtcatgagagaagcctataacatgtttaaagacggtggtgatccagaaaagttcaagattgcattttctacctcaatggctatggctcccaacctcaaacccaccatttccatgtccctcactccattcctaacctctcctcccaccagaagactgttccttccctcagtttctggcatctgggatgccatcaccggcggcaacaatccccgtgaagccgttgccgcaatccgaggtggaatggttctgtttagacagggtgatgttgcagggtctgtagcagaatttgacaaggcaattgagcttgatcctcgccaaaaggcatatctttggcaaagggggctgtcactttactatcttgatagatttgaagaaggggcagagcagttccgaatagatcttgctgatgcatttaaaaatggccgagacagtgattatttctatgcttctctatatgctggcctttactatgaagctcagaagaaactggatgaggccaaagttcacatccttgctgcttatcagtcttcctatggacaaagatctgatgattacatggcctctcttgccaaagttcactgtgtttgtcgaaattggagatctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

388

Amino Acids

43.68

Weight (kDa)

6.39

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05625 AT3G05625
fragaria_vesca	FvH4_6g06920 FvH4_6g06920
malus_domestica	MD04G1197600.v1.1
prunus_persica	Prupe.6G318000_v2.0.a1 Prupe.6G318000_v2.0.a1
pyrus_communis	pycom04g17490
rosa_chinensis	RchiOBHm_Chr1g0332671 RchiOBHm_Chr3g0456451
rosa_laevigata	RLG00000025304
rosa_multiflora	Rmu_sc0002607.1_g000017
rosa_roxburghii	Rroxscaffold_6G00422740
rosa_rugosa	Rorug02G0219500 Rorug03G0012800 Rorug03G0012900 Rorug03G0013000 Rorug03G0013100
rosa_samantha	Rh1DG132400 Rh3AG073500 Rh3BG075400 Rh3CG074900 Rh3DG076700
rosa_wichuraiana	Rw0G012240 Rw3G006300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AciI	CCGC	4 cut(s)	237, 264, 756, 783
AclWI	GGATC	4 cut(s)	341, 542, 593, 860
AcoI	YGGCCR	1 cut(s)	979
AcsI	RAATTY	2 cut(s)	323, 842
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	4 cut(s)	120, 410, 613, 929
AluBI	AGCT	5 cut(s)	93, 343, 494, 862, 1034
AluI	AGCT	5 cut(s)	93, 343, 494, 862, 1034
Alw26I	GTCTC	1 cut(s)	978
AlwI	GGATC	4 cut(s)	341, 542, 593, 860
AlwNI	CAGNNNCTG	4 cut(s)	212, 314, 731, 833
AoxI	GGCC	4 cut(s)	979, 1018, 1053, 1116
ApeKI	GCWGC	1 cut(s)	1073
ApoI	RAATTY	2 cut(s)	323, 842
Asp700I	GAANNNNTTC	1 cut(s)	528
AsuHPI	GGTGA	5 cut(s)	223, 311, 608, 742, 830
BbsI	GAAGAC	3 cut(s)	196, 715, 1077
BbvI	GCAGC	1 cut(s)	1060
BccI	CCATC	2 cut(s)	236, 755
BceAI	ACGGC	2 cut(s)	242, 761
BcoDI	GTCTC	1 cut(s)	978
BfmI	CTRYAG	3 cut(s)	178, 315, 834
BfuAI	ACCTGC	1 cut(s)	167
BglII	AGATCT	3 cut(s)	955, 1100, 1157
BisI	GCNGC	5 cut(s)	238, 264, 757, 783, 1074
BlsI	GCNGC	5 cut(s)	239, 265, 758, 784, 1075
BmiI	GGNNCC	2 cut(s)	12, 645
BmsI	GCATC	5 cut(s)	214, 225, 733, 744, 955
BpiI	GAAGAC	3 cut(s)	196, 715, 1077
BpuEI	CTTGAG	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	271, 790
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 682, 712
Bse118I	RCCGGY	2 cut(s)	233, 752
Bse1I	ACTGG	1 cut(s)	1050
BseDI	CCNNGG	2 cut(s)	271, 790
BseGI	GGATG	4 cut(s)	229, 748, 1054, 1065
BseMII	CTCAG	3 cut(s)	219, 738, 1049
BseNI	ACTGG	1 cut(s)	1050
BseRI	GAGGAG	3 cut(s)	54, 479, 687
BseXI	GCAGC	1 cut(s)	1060
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	4 cut(s)	981, 1020, 1055, 1118
BsiSI	CCGG	2 cut(s)	234, 753
BslFI	GGGAC	2 cut(s)	25, 658
BsmAI	GTCTC	1 cut(s)	978
BsmFI	GGGAC	2 cut(s)	25, 658
BsnI	GGCC	4 cut(s)	981, 1020, 1055, 1118
Bsp143I	GATC	7 cut(s)	346, 547, 598, 865, 955, 1100, 1157
BspACI	CCGC	4 cut(s)	237, 264, 756, 783
BspANI	GGCC	4 cut(s)	981, 1020, 1055, 1118
BspCNI	CTCAG	3 cut(s)	218, 737, 1048
BspHI	TCATGA	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	12, 645
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	4 cut(s)	341, 542, 593, 860
BsrFI	RCCGGY	2 cut(s)	233, 752
BsrI	ACTGG	1 cut(s)	1050
BssAI	RCCGGY	2 cut(s)	233, 752
BssECI	CCNNGG	2 cut(s)	271, 790
BssMI	GATC	7 cut(s)	346, 547, 598, 865, 955, 1100, 1157
Bst4CI	ACNGT	6 cut(s)	195, 528, 593, 714, 989, 1139
BstC8I	GCNNGC	1 cut(s)	1018
BstDEI	CTNAG	4 cut(s)	152, 205, 724, 1035
BstF5I	GGATG	4 cut(s)	229, 748, 1054, 1065
BstKTI	GATC	7 cut(s)	349, 550, 601, 868, 958, 1103, 1160
BstMAI	GTCTC	1 cut(s)	978
BstMBI	GATC	7 cut(s)	346, 547, 598, 865, 955, 1100, 1157
BstMWI	GCNNNNNNNGC	5 cut(s)	263, 379, 782, 898, 1124
BstNSI	RCATGY	1 cut(s)	583
BstSFI	CTRYAG	3 cut(s)	178, 315, 834
BstV1I	GCAGC	1 cut(s)	1060
BstV2I	GAAGAC	3 cut(s)	196, 715, 1077
BstX2I	RGATCY	4 cut(s)	547, 955, 1100, 1157
BstYI	RGATCY	4 cut(s)	547, 955, 1100, 1157
BsuRI	GGCC	4 cut(s)	981, 1020, 1055, 1118
BtsCI	GGATG	4 cut(s)	229, 748, 1054, 1065
BtsIMutI	CAGTG	2 cut(s)	994, 1135
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	1018
CaiI	CAGNNNCTG	4 cut(s)	212, 314, 731, 833
CciI	TCATGA	1 cut(s)	561
Cfr10I	RCCGGY	2 cut(s)	233, 752
CviAII	CATG	5 cut(s)	37, 562, 580, 670, 1114
DdeI	CTNAG	4 cut(s)	152, 205, 724, 1035
DpnI	GATC	7 cut(s)	348, 549, 600, 867, 957, 1102, 1159
DpnII	GATC	7 cut(s)	346, 547, 598, 865, 955, 1100, 1157
DraI	TTTAAA	2 cut(s)	586, 973
EaeI	YGGCCR	1 cut(s)	979
EcoT22I	ATGCAT	1 cut(s)	970
FaeI	CATG	5 cut(s)	40, 565, 583, 673, 1117
FaqI	GGGAC	2 cut(s)	25, 658
FatI	CATG	5 cut(s)	36, 561, 579, 669, 1113
Fnu4HI	GCNGC	5 cut(s)	238, 264, 757, 783, 1074
FokI	GGATG	4 cut(s)	236, 755, 1052, 1061
Fsp4HI	GCNGC	5 cut(s)	238, 264, 757, 783, 1074
GluI	GCNGC	5 cut(s)	238, 264, 757, 783, 1074
HaeIII	GGCC	4 cut(s)	981, 1020, 1055, 1118
HapII	CCGG	2 cut(s)	234, 753
Hin1II	CATG	5 cut(s)	40, 565, 583, 673, 1117
HinfI	GANTC	3 cut(s)	448, 467, 507
HpaII	CCGG	2 cut(s)	234, 753
HphI	GGTGA	5 cut(s)	223, 311, 608, 742, 830
Hpy166II	GTNNAC	2 cut(s)	1063, 1135
Hpy188I	TCNGA	8 cut(s)	129, 272, 431, 791, 950, 1038, 1105, 1162
Hpy188III	TCNNGA	7 cut(s)	398, 533, 545, 562, 602, 613, 917
Hpy8I	GTNNAC	2 cut(s)	1063, 1135
HpyAV	CCTTC	5 cut(s)	126, 209, 407, 728, 926
HpyCH4III	ACNGT	6 cut(s)	195, 528, 593, 714, 989, 1139
HpyCH4V	TGCA	5 cut(s)	162, 308, 620, 827, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	263, 379, 782, 898, 1124
HpyF3I	CTNAG	4 cut(s)	152, 205, 724, 1035
Hsp92II	CATG	5 cut(s)	40, 565, 583, 673, 1117
Kzo9I	GATC	7 cut(s)	346, 547, 598, 865, 955, 1100, 1157
LmnI	GCTCC	2 cut(s)	16, 649
Lsp1109I	GCAGC	1 cut(s)	1060
LweI	GCATC	5 cut(s)	214, 225, 733, 744, 955
MaeIII	GTNAC	2 cut(s)	384, 903
MalI	GATC	7 cut(s)	348, 549, 600, 867, 957, 1102, 1159
MboI	GATC	7 cut(s)	346, 547, 598, 865, 955, 1100, 1157
MboII	GAAGA	6 cut(s)	201, 422, 720, 941, 1051, 1077
MfeI	CAATTG	2 cut(s)	336, 855
MflI	RGATCY	4 cut(s)	547, 955, 1100, 1157
MluCI	AATT	8 cut(s)	123, 173, 323, 336, 497, 842, 855, 1150
MlyI	GAGTC	2 cut(s)	476, 516
Mph1103I	ATGCAT	1 cut(s)	970
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	3 cut(s)	105, 585, 972
MslI	CAYNNNNRTG	2 cut(s)	35, 668
MspI	CCGG	2 cut(s)	234, 753
MunI	CAATTG	2 cut(s)	336, 855
MwoI	GCNNNNNNNGC	5 cut(s)	263, 379, 782, 898, 1124
NdeII	GATC	7 cut(s)	346, 547, 598, 865, 955, 1100, 1157
NlaIII	CATG	5 cut(s)	40, 565, 583, 673, 1117
NlaIV	GGNNCC	2 cut(s)	12, 645
NmeAIII	GCCGAG	1 cut(s)	1007
NmuCI	GTSAC	2 cut(s)	384, 903
NsiI	ATGCAT	1 cut(s)	970
NspI	RCATGY	1 cut(s)	583
PagI	TCATGA	1 cut(s)	561
PciI	ACATGT	1 cut(s)	579
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	5 cut(s)	239, 265, 758, 784, 1075
PleI	GAGTC	2 cut(s)	475, 515
PpsI	GAGTC	2 cut(s)	475, 515
PscI	ACATGT	1 cut(s)	579
PspN4I	GGNNCC	2 cut(s)	12, 645
PstNI	CAGNNNCTG	4 cut(s)	212, 314, 731, 833
PsuI	RGATCY	4 cut(s)	547, 955, 1100, 1157
RseI	CAYNNNNRTG	2 cut(s)	35, 668
SaqAI	TTAA	3 cut(s)	105, 585, 972
SatI	GCNGC	5 cut(s)	238, 264, 757, 783, 1074
Sau3AI	GATC	7 cut(s)	346, 547, 598, 865, 955, 1100, 1157
SchI	GAGTC	2 cut(s)	476, 516
SfaNI	GCATC	5 cut(s)	214, 225, 733, 744, 955
SfcI	CTRYAG	3 cut(s)	178, 315, 834
SgrAI	CRCCGGYG	2 cut(s)	233, 752
SmiMI	CAYNNNNRTG	2 cut(s)	35, 668
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	8 cut(s)	123, 173, 323, 336, 497, 842, 855, 1150
SsiI	CCGC	4 cut(s)	237, 264, 756, 783
TaaI	ACNGT	6 cut(s)	195, 528, 593, 714, 989, 1139
TaqI	TCGA	1 cut(s)	1147
TasI	AATT	8 cut(s)	123, 173, 323, 336, 497, 842, 855, 1150
TauI	GCSGC	4 cut(s)	240, 266, 759, 785
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	3 cut(s)	105, 585, 972
Tru9I	TTAA	3 cut(s)	105, 585, 972
TscAI	CASTG	2 cut(s)	994, 1142
TseFI	GTSAC	2 cut(s)	384, 903
TseI	GCWGC	1 cut(s)	1073
Tsp45I	GTSAC	2 cut(s)	384, 903
TspDTI	ATGAA	1 cut(s)	1044
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	994, 1142
XapI	RAATTY	2 cut(s)	323, 842
XceI	RCATGY	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	528
Zsp2I	ATGCAT	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.