FvH4_6g07000

Topless-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005953
Physical Location & Seq
Forward (+)
4212585 .. 4218787
6203 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07000.t1

Sequence Viewer

Length: 2082 bp
ATGTCGGATTTGACTCATTTGAACAAAGAATTGGTGTTACTGATTATCCAATTCCTAGGTGACGAGAAATACAAGGGCGCCATGCACATGCTTGAGCAAGAATCAGGGTTCTTTTTCGACCTCACGTACTTTGAAGAGAAGATTTTGAATGGAGAATGGGATGAACTAGAAAGGTATATCTCAGGATTCACAAAATACAATGACAATCGTCATTCCATAAAAATTATGTTTGAAATTACGAAGCAGAAGTATCTGGAAGCACTTGATAGGAACCTCAAGGCTGAGGCAGCTGACATTTTAGTCAAGGAGCTGCGAAAATTTTCTTTATATAACCCAGAGGTTTATAAAGATCTCACAGAGCTGTTAACTCTGCATAACTTTAGGGAGAATGCACATCTGAACCAGTATGCCGACATCAGATCAGCTCGTGAAAGAATGGTGGTAGTGCTCACAAAAGTTGTAAAAACCAACCCTCTACTTAAGGATAAGCTTATATTTCCCACTGCTGGGAAATCAAGACTGCGGAAACTGATTAATCAGAGTCTAAACTGGCAGCACGACCAATGCAAGAACCCGGTGCCGAATCCAGTAGTAAGAACTTTGTACGAAGATCATTATTGTCCCCCACCTCTGATTGGTCCCCTGCCCCGGCCTTTTTTTGGTCAACCCCTGCCCGGGCCTTTTCCTGCTCCTTTTCCCTCTGTGGAAGGAGCTATAGCTCCCTATCAGGCCAATGGAGAAGTTGCAAGTCTAAAGCGGCCAAGAACAACTCCGGCAACTGTTAGTGAGGTTGGTCCTTCAATTACTGGTTTTACCGCCATTGACCGAATGGCGGAAGAACTAGAACACTCTCGATATAATGTAGAGGGTACTTCTCAAACTTCTACACAGCTTCGAACTTCTTGGTTGGCGAAGAACCTGCCAAAAAACGTGGCTTATAGCTTCCATCAAGGATCTAAAGTCACAAGCATGGAATTTCATCCTAATCAGCATACATTGCTTCTTGTTGGTGCTAGAAACGGTGAATTTAGTATATGGGAACTGAAATCGCAGCAGAGAGTGGCTTCGGAGCCATTCAAGATATGGGATACGGCAGCAACTTCATTGGAACTACAGGGCACACTTTCCAATGAAGACGCATGTATATCTGTTAGCCGTGTTACATGGAGTCCAGATGGGAACTATTTTGGAGTTGCATATACTAGAAATTTGATTCATTTGTATGCTCATTCTGGAATCAATGAGATATGCCAGTGTTTGGAGATTAACGCTCATGATGGTCGTGTCAATGACTTGGCTTTCGATCATCGGGATAAAGAACTGTATCTTATAACATGTGGAGATGACAAGGTTATAAAGGTATGGGATATAGCGGGACAAAACTTGTATAACTTTGTTGGTCATGAAGCGCCGGTCTATTCAGTCTGTCCTCATCATAACAAGAACTTTCAGTTTATATTTTCGACTTCTATTGATGGGAAGATAAGGACCTGGATGTATGACAATGAGGGTCCTATATCTGGCTGTGATGCTCCTGGAAACTGGTGCACAACGTTAATTTTCAAGTCGGATGGTAGTAGCCGAATGTTCTCTTGCGGAACTAGTAAAGAGGGAGACACTTTTCTAGTTCAATGGAGTGCAAATAATGGAATAGTTGATGATGAAGCCAAAAGGAAAATTTATTCTGGGTTTACTGAGAAATCTGCAAGGATTGCCCATTTTGACATAACGAATCAGTTTTTGGCTGTGGGTGAAGATAGCCAGATAAAGTATTGGCATATGGACCATGACGACGTTCTAACTAGCACAAATGTAGAGGGTGGACTGCCGAGTCGGCCTCGCTTGAGATTCAACAAGGAAGGAAGTCTTCTTGCTGTCACAACGGCAAACGAGGGATTCATGATACTTGCAAATGGAACTGGACGCATAAGAGTAGGATTACCTTATTCCGATAAACTGAGAGTTCCAATTGAATCCATTGTAAACAAGGAAGCTGGCTCATCTTTGGGTGCAAATGTCAATGAGGACAATGGGAAATCTGAAAGGAGCTCTCCTGCTAGGCCTAGTACATCTCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box WD40

Protein Analysis

694

Amino Acids

78.14

Weight (kDa)

6.21

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 41 - 164 2.5e-45 TPR1-like, CTLH-containing domain
zf_topless PF21359 167 - 207 3.9e-19 TOPLESS, zinc finger domain
Beta-prop_EML_2 PF23414 309 - 439 1.5e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3 PF25174 315 - 475 1.6e-10 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 318 - 457 2.3e-06 WDHD1 first WD40 domain
Beta-prop_RIG_2nd PF23775 329 - 472 1.1e-06 RIG second beta-propeller
Beta-prop_WDR3_1st PF25173 355 - 533 1.7e-16 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 363 - 507 4e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 383 - 598 1.5e-17 WDR5 beta-propeller domain
WDR55 PF24796 384 - 526 5e-06 WDR55
Beta-prop_WDR3_2nd PF25172 421 - 503 2.1e-06 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 429 - 503 7.4e-08 WDHD1 first WD40 domain
WD40_Prp19 PF24814 442 - 627 4.2e-06 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 443 - 527 8.6e-07 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 345, 1331, 1355
AasI GACNNNNNNGTC 2 cut(s) 299, 1830
Acc36I ACCTGC 1 cut(s) 927
AccB1I GGYRCC 2 cut(s) 77, 577
AccB7I CCANNNNNTGG 1 cut(s) 1258
AciI CCGC 6 cut(s) 523, 757, 816, 833, 1373, 1596
AclI AACGTT 1 cut(s) 1553
AclWI GGATC 1 cut(s) 961
AcoI YGGCCR 1 cut(s) 758
AcsI RAATTY 5 cut(s) 317, 974, 1025, 1207, 1677
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 4 cut(s) 128, 605, 871, 2068
AflII CTTAAG 1 cut(s) 479
AflIII ACRYGT 1 cut(s) 1334
AhlI ACTAGT 1 cut(s) 1601
AjnI CCWGG 2 cut(s) 1490, 1534
AjuI GAANNNNNNNTTGG 4 cut(s) 14, 46, 1724, 1756
Alw21I GWGCWC 3 cut(s) 450, 1550, 2051
Alw26I GTCTC 1 cut(s) 1608
Alw44I GTGCAC 1 cut(s) 1546
AlwI GGATC 1 cut(s) 961
Ama87I CYCGRG 1 cut(s) 674
AoxI GGCC 6 cut(s) 650, 677, 729, 758, 1835, 2060
ApaLI GTGCAC 1 cut(s) 1546
ApeKI GCWGC 5 cut(s) 287, 310, 553, 1051, 1094
ApoI RAATTY 5 cut(s) 317, 974, 1025, 1207, 1677
ArsI GACNNNNNNTTYG 2 cut(s) 1283, 1315
AseI ATTAAT 1 cut(s) 534
Asp700I GAANNNNTTC 1 cut(s) 319
AspA2I CCTAGG 1 cut(s) 55
AspLEI GCGC 2 cut(s) 80, 1411
AspS9I GGNCC 6 cut(s) 638, 677, 794, 1488, 1511, 1783
AsuC2I CCSGG 4 cut(s) 575, 649, 675, 676
AsuHPI GGTGA 3 cut(s) 71, 1034, 1763
AsuII TTCGAA 1 cut(s) 895
AvaI CYCGRG 1 cut(s) 674
AvaII GGWCC 5 cut(s) 638, 794, 1488, 1511, 1783
AvrII CCTAGG 1 cut(s) 55
BaeGI GKGCMC 2 cut(s) 1121, 1550
BanI GGYRCC 2 cut(s) 77, 577
BanII GRGCYC 1 cut(s) 2051
BauI CACGAG 1 cut(s) 426
BbsI GAAGAC 2 cut(s) 1140, 1859
Bbv12I GWGCWC 3 cut(s) 450, 1550, 2051
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 5 cut(s) 297, 299, 565, 1063, 1106
BccI CCATC 5 cut(s) 954, 1169, 1271, 1469, 1565
BceAI ACGGC 3 cut(s) 1107, 1140, 1899
BcgI CGANNNNNNTGC 2 cut(s) 901, 935
BciT130I CCWGG 2 cut(s) 1492, 1536
BciVI GTATCC 1 cut(s) 1081
BcnI CCSGG 4 cut(s) 575, 649, 675, 676
BcoDI GTCTC 1 cut(s) 1608
BcuI ACTAGT 1 cut(s) 1601
BfmI CTRYAG 2 cut(s) 714, 1112
BfoI RGCGCY 2 cut(s) 81, 1412
BfrI CTTAAG 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 927
BfuI GTATCC 1 cut(s) 1081
BglI GCCNNNNNGGC 1 cut(s) 1834
BglII AGATCT 1 cut(s) 349
BisI GCNGC 6 cut(s) 288, 311, 554, 758, 1052, 1095
BlnI CCTAGG 1 cut(s) 55
BlsI GCNGC 6 cut(s) 289, 312, 555, 759, 1053, 1096
Bme1390I CCNGG 6 cut(s) 575, 649, 675, 676, 1492, 1536
Bme18I GGWCC 5 cut(s) 638, 794, 1488, 1511, 1783
BmeT110I CYCGRG 1 cut(s) 674
BmgT120I GGNCC 6 cut(s) 638, 677, 794, 1488, 1511, 1783
BmiI GGNNCC 6 cut(s) 79, 272, 579, 640, 1071, 1512
BmrFI CCNGG 6 cut(s) 575, 649, 675, 676, 1492, 1536
BmsI GCATC 1 cut(s) 1519
BoxI GACNNNNGTC 1 cut(s) 207
BpiI GAAGAC 2 cut(s) 1140, 1859
BplI GAGNNNNNCTC 2 cut(s) 1822, 1854
Bpu10I CCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 895
BpuEI CTTGAG 3 cut(s) 113, 260, 1864
BpuMI CCSGG 4 cut(s) 575, 649, 675, 676
BsaAI YACGTR 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 55, 647, 674
Bse118I RCCGGY 1 cut(s) 1411
Bse1I ACTGG 7 cut(s) 403, 554, 587, 811, 1252, 1547, 1924
Bse3DI GCAATG 1 cut(s) 995
BseBI CCWGG 2 cut(s) 1492, 1536
BseDI CCNNGG 3 cut(s) 55, 647, 674
BseGI GGATG 4 cut(s) 166, 979, 1500, 1576
BseMI GCAATG 1 cut(s) 995
BseMII CTCAG 4 cut(s) 195, 273, 1686, 1949
BseNI ACTGG 7 cut(s) 403, 554, 587, 811, 1252, 1547, 1924
BseSI GKGCMC 2 cut(s) 1121, 1550
BseXI GCAGC 5 cut(s) 297, 299, 565, 1063, 1106
BseYI CCCAGC 1 cut(s) 506
BshFI GGCC 6 cut(s) 652, 679, 731, 760, 1837, 2062
BshNI GGYRCC 2 cut(s) 77, 577
BsiHKAI GWGCWC 3 cut(s) 450, 1550, 2051
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 5 cut(s) 575, 649, 675, 773, 1412
BslFI GGGAC 3 cut(s) 606, 624, 1389
BsmAI GTCTC 1 cut(s) 1608
BsmFI GGGAC 3 cut(s) 606, 624, 1389
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 6 cut(s) 652, 679, 731, 760, 1837, 2062
BsoBI CYCGRG 1 cut(s) 674
Bsp119I TTCGAA 1 cut(s) 895
Bsp1286I GDGCHC 4 cut(s) 450, 1121, 1550, 2051
Bsp143I GATC 5 cut(s) 349, 419, 610, 953, 1303
BspACI CCGC 6 cut(s) 523, 757, 816, 833, 1373, 1596
BspANI GGCC 6 cut(s) 652, 679, 731, 760, 1837, 2062
BspCNI CTCAG 4 cut(s) 194, 274, 1687, 1950
BspHI TCATGA 3 cut(s) 1273, 1402, 1899
BspLI GGNNCC 6 cut(s) 79, 272, 579, 640, 1071, 1512
BspMI ACCTGC 1 cut(s) 927
BspPI GGATC 1 cut(s) 961
BspT104I TTCGAA 1 cut(s) 895
BspT107I GGYRCC 2 cut(s) 77, 577
BspTI CTTAAG 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 995
BsrFI RCCGGY 1 cut(s) 1411
BsrI ACTGG 7 cut(s) 403, 554, 587, 811, 1252, 1547, 1924
BssAI RCCGGY 1 cut(s) 1411
BssECI CCNNGG 3 cut(s) 55, 647, 674
BssMI GATC 5 cut(s) 349, 419, 610, 953, 1303
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 1492, 1536
Bst4CI ACNGT 3 cut(s) 781, 1022, 1323
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 78
BstAFI CTTAAG 1 cut(s) 479
BstAPI GCANNNNNTGC 2 cut(s) 997, 1712
BstBAI YACGTR 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 895
BstC8I GCNNGC 1 cut(s) 1996
BstDEI CTNAG 4 cut(s) 181, 282, 1695, 1958
BstF5I GGATG 4 cut(s) 166, 979, 1500, 1576
BstH2I RGCGCY 2 cut(s) 81, 1412
BstHHI GCGC 2 cut(s) 80, 1411
BstKTI GATC 5 cut(s) 352, 422, 613, 956, 1306
BstMAI GTCTC 1 cut(s) 1608
BstMBI GATC 5 cut(s) 349, 419, 610, 953, 1303
BstMWI GCNNNNNNNGC 4 cut(s) 287, 997, 1712, 1834
BstNI CCWGG 2 cut(s) 1492, 1536
BstNSI RCATGY 3 cut(s) 91, 1143, 1338
BstPAI GACNNNNGTC 1 cut(s) 207
BstSCI CCNGG 6 cut(s) 573, 647, 673, 674, 1490, 1534
BstSFI CTRYAG 2 cut(s) 714, 1112
BstSLI GKGCMC 2 cut(s) 1121, 1550
BstV1I GCAGC 5 cut(s) 297, 299, 565, 1063, 1106
BstV2I GAAGAC 2 cut(s) 1140, 1859
BstX2I RGATCY 2 cut(s) 349, 953
BstYI RGATCY 2 cut(s) 349, 953
BsuI GTATCC 1 cut(s) 1081
BsuRI GGCC 6 cut(s) 652, 679, 731, 760, 1837, 2062
BtsCI GGATG 4 cut(s) 166, 979, 1500, 1576
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 501, 1259
BveI ACCTGC 1 cut(s) 927
Cac8I GCNNGC 1 cut(s) 1996
CciI TCATGA 3 cut(s) 1273, 1402, 1899
CfoI GCGC 2 cut(s) 80, 1411
Cfr10I RCCGGY 1 cut(s) 1411
Cfr13I GGNCC 6 cut(s) 638, 677, 794, 1488, 1511, 1783
Cfr9I CCCGGG 1 cut(s) 674
CseI GACGC 2 cut(s) 1145, 1932
Csp6I GTAC 4 cut(s) 127, 604, 870, 2067
CspCI CAANNNNNGTGG 2 cut(s) 912, 947
CviQI GTAC 4 cut(s) 127, 604, 870, 2067
DdeI CTNAG 4 cut(s) 181, 282, 1695, 1958
DinI GGCGCC 1 cut(s) 79
DpnI GATC 5 cut(s) 351, 421, 612, 955, 1305
DpnII GATC 5 cut(s) 349, 419, 610, 953, 1303
DrdI GACNNNNNNGTC 2 cut(s) 299, 1830
DseDI GACNNNNNNGTC 2 cut(s) 299, 1830
EaeI YGGCCR 1 cut(s) 758
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 848
Ecl136II GAGCTC 1 cut(s) 2049
Eco130I CCWWGG 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 2062
Eco24I GRGCYC 1 cut(s) 2051
Eco47I GGWCC 5 cut(s) 638, 794, 1488, 1511, 1783
Eco53kI GAGCTC 1 cut(s) 2049
Eco88I CYCGRG 1 cut(s) 674
EcoICRI GAGCTC 1 cut(s) 2049
EcoO109I RGGNCCY 2 cut(s) 1488, 1511
EcoRII CCWGG 2 cut(s) 1490, 1534
EcoT14I CCWWGG 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 2051
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 55
FalI AAGNNNNNCTT 2 cut(s) 1851, 1883
FaqI GGGAC 3 cut(s) 606, 624, 1389
FauI CCCGC 1 cut(s) 1366
FauNDI CATATG 1 cut(s) 1779
Fnu4HI GCNGC 6 cut(s) 288, 311, 554, 758, 1052, 1095
FokI GGATG 4 cut(s) 173, 966, 1507, 1583
FriOI GRGCYC 1 cut(s) 2051
Fsp4HI GCNGC 6 cut(s) 288, 311, 554, 758, 1052, 1095
GlaI GCGC 2 cut(s) 79, 1410
GluI GCNGC 6 cut(s) 288, 311, 554, 758, 1052, 1095
GsaI CCCAGC 1 cut(s) 510
HaeII RGCGCY 2 cut(s) 81, 1412
HaeIII GGCC 6 cut(s) 652, 679, 731, 760, 1837, 2062
HapII CCGG 5 cut(s) 575, 649, 675, 773, 1412
HgaI GACGC 2 cut(s) 1145, 1932
HhaI GCGC 2 cut(s) 80, 1411
Hin1I GRCGYC 1 cut(s) 78
Hin6I GCGC 2 cut(s) 78, 1409
HinP1I GCGC 2 cut(s) 78, 1409
HincII GTYRAC 2 cut(s) 366, 665
HindII GTYRAC 2 cut(s) 366, 665
HindIII AAGCTT 1 cut(s) 488
HpaI GTTAAC 1 cut(s) 366
HpaII CCGG 5 cut(s) 575, 649, 675, 773, 1412
HphI GGTGA 3 cut(s) 71, 1034, 1763
Hpy166II GTNNAC 6 cut(s) 366, 665, 1548, 1692, 1823, 1984
Hpy188I TCNGA 9 cut(s) 7, 399, 419, 540, 633, 1069, 1570, 1951, 2041
Hpy8I GTNNAC 6 cut(s) 366, 665, 1548, 1692, 1823, 1984
Hpy99I CGWCG 1 cut(s) 1796
HpyAV CCTTC 3 cut(s) 701, 807, 1853
HpyCH4III ACNGT 3 cut(s) 781, 1022, 1323
HpyCH4IV ACGT 4 cut(s) 125, 930, 1553, 1794
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 997, 1712, 1834
HpyF3I CTNAG 4 cut(s) 181, 282, 1695, 1958
HpySE526I ACGT 4 cut(s) 125, 930, 1553, 1794
Hsp92I GRCGYC 1 cut(s) 78
HspAI GCGC 2 cut(s) 78, 1409
KasI GGCGCC 1 cut(s) 77
KspAI GTTAAC 1 cut(s) 366
Kzo9I GATC 5 cut(s) 349, 419, 610, 953, 1303
LmnI GCTCC 7 cut(s) 307, 694, 710, 724, 1069, 1537, 2046
Lsp1109I GCAGC 5 cut(s) 297, 299, 565, 1063, 1106
LweI GCATC 1 cut(s) 1519
MaeII ACGT 4 cut(s) 125, 930, 1553, 1794
MaeIII GTNAC 5 cut(s) 36, 59, 961, 1159, 1876
MalI GATC 5 cut(s) 351, 421, 612, 955, 1305
MboI GATC 5 cut(s) 349, 419, 610, 953, 1303
MboII GAAGA 9 cut(s) 146, 151, 620, 848, 925, 1145, 1492, 1766, 1859
MfeI CAATTG 1 cut(s) 1968
MflI RGATCY 2 cut(s) 349, 953
MhlI GDGCHC 4 cut(s) 450, 1121, 1550, 2051
Mly113I GGCGCC 1 cut(s) 78
MlyI GAGTC 4 cut(s) 7, 550, 1177, 1840
MmeI TCCRAC 1 cut(s) 1548
MroXI GAANNNNTTC 1 cut(s) 319
MseI TTAA 5 cut(s) 365, 480, 534, 1266, 1556
MslI CAYNNNNRTG 3 cut(s) 86, 968, 1221
MspA1I CMGCKG 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 5 cut(s) 575, 649, 675, 773, 1412
MspR9I CCNGG 6 cut(s) 575, 649, 675, 676, 1492, 1536
MunI CAATTG 1 cut(s) 1968
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 2 cut(s) 1492, 1536
MwoI GCNNNNNNNGC 4 cut(s) 287, 997, 1712, 1834
NarI GGCGCC 1 cut(s) 78
NciI CCSGG 4 cut(s) 575, 649, 675, 676
NdeI CATATG 1 cut(s) 1779
NdeII GATC 5 cut(s) 349, 419, 610, 953, 1303
NlaIV GGNNCC 6 cut(s) 79, 272, 579, 640, 1071, 1512
NmeAIII GCCGAG 1 cut(s) 1854
NmuCI GTSAC 3 cut(s) 59, 961, 1876
NspI RCATGY 3 cut(s) 91, 1143, 1338
NspV TTCGAA 1 cut(s) 895
PagI TCATGA 3 cut(s) 1273, 1402, 1899
PceI AGGCCT 1 cut(s) 2062
PciI ACATGT 1 cut(s) 1334
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 319
PfeI GAWTC 9 cut(s) 101, 186, 583, 1213, 1236, 1732, 1848, 1896, 1973
PflMI CCANNNNNTGG 1 cut(s) 1258
PfoI TCCNGGA 1 cut(s) 1534
PkrI GCNGC 6 cut(s) 289, 312, 555, 759, 1053, 1096
PleI GAGTC 4 cut(s) 7, 549, 1176, 1839
PluTI GGCGCC 1 cut(s) 81
PpsI GAGTC 4 cut(s) 7, 549, 1176, 1839
Ppu21I YACGTR 1 cut(s) 126
PpuMI RGGWCCY 2 cut(s) 1488, 1511
PscI ACATGT 1 cut(s) 1334
PshAI GACNNNNGTC 1 cut(s) 207
PshBI ATTAAT 1 cut(s) 534
PsiI TTATAA 3 cut(s) 345, 1331, 1355
Psp124BI GAGCTC 1 cut(s) 2051
Psp1406I AACGTT 1 cut(s) 1553
Psp5II RGGWCCY 2 cut(s) 1488, 1511
Psp6I CCWGG 2 cut(s) 1490, 1534
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 2 cut(s) 1490, 1534
PspN4I GGNNCC 6 cut(s) 79, 272, 579, 640, 1071, 1512
PspPI GGNCC 6 cut(s) 638, 677, 794, 1488, 1511, 1783
PspPPI RGGWCCY 2 cut(s) 1488, 1511
PsuI RGATCY 2 cut(s) 349, 953
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 4 cut(s) 128, 605, 871, 2068
RsaNI GTAC 4 cut(s) 127, 604, 870, 2067
RseI CAYNNNNRTG 3 cut(s) 86, 968, 1221
SacI GAGCTC 1 cut(s) 2051
SaqAI TTAA 5 cut(s) 365, 480, 534, 1266, 1556
SatI GCNGC 6 cut(s) 288, 311, 554, 758, 1052, 1095
Sau3AI GATC 5 cut(s) 349, 419, 610, 953, 1303
Sau96I GGNCC 6 cut(s) 638, 677, 794, 1488, 1511, 1783
SchI GAGTC 4 cut(s) 7, 550, 1177, 1840
ScrFI CCNGG 6 cut(s) 575, 649, 675, 676, 1492, 1536
SduI GDGCHC 4 cut(s) 450, 1121, 1550, 2051
SfaNI GCATC 1 cut(s) 1519
SfcI CTRYAG 2 cut(s) 714, 1112
SfoI GGCGCC 1 cut(s) 79
SfuI TTCGAA 1 cut(s) 895
SinI GGWCC 5 cut(s) 638, 794, 1488, 1511, 1783
SmaI CCCGGG 1 cut(s) 676
SmiMI CAYNNNNRTG 3 cut(s) 86, 968, 1221
SmlI CTYRAG 4 cut(s) 92, 275, 479, 1843
SmoI CTYRAG 4 cut(s) 92, 275, 479, 1843
SpeI ACTAGT 1 cut(s) 1601
SrfI GCCCGGGC 1 cut(s) 676
SseBI AGGCCT 1 cut(s) 2062
SsiI CCGC 6 cut(s) 523, 757, 816, 833, 1373, 1596
SspDI GGCGCC 1 cut(s) 77
SstI GAGCTC 1 cut(s) 2051
StuI AGGCCT 1 cut(s) 2062
StyD4I CCNGG 6 cut(s) 573, 647, 673, 674, 1490, 1534
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 781, 1022, 1323
TaiI ACGT 4 cut(s) 128, 933, 1556, 1797
TaqI TCGA 5 cut(s) 117, 853, 895, 1302, 1463
TaqII GACCGA 1 cut(s) 840
TatI WGTACW 1 cut(s) 2066
TauI GCSGC 1 cut(s) 760
TfiI GAWTC 9 cut(s) 101, 186, 583, 1213, 1236, 1732, 1848, 1896, 1973
Tru1I TTAA 5 cut(s) 365, 480, 534, 1266, 1556
Tru9I TTAA 5 cut(s) 365, 480, 534, 1266, 1556
TscAI CASTG 2 cut(s) 508, 1259
TseFI GTSAC 3 cut(s) 59, 961, 1876
TseI GCWGC 5 cut(s) 287, 310, 553, 1051, 1094
Tsp45I GTSAC 3 cut(s) 59, 961, 1876
TspDTI ATGAA 8 cut(s) 177, 968, 1092, 1146, 1205, 1419, 1677, 1888
TspMI CCCGGG 1 cut(s) 674
TspRI CASTG 2 cut(s) 508, 1259
Van91I CCANNNNNTGG 1 cut(s) 1258
Vha464I CTTAAG 1 cut(s) 479
VneI GTGCAC 1 cut(s) 1546
VpaK11BI GGWCC 5 cut(s) 638, 794, 1488, 1511, 1783
VspI ATTAAT 1 cut(s) 534
XapI RAATTY 5 cut(s) 317, 974, 1025, 1207, 1677
XceI RCATGY 3 cut(s) 91, 1143, 1338
XcmI CCANNNNNNNNNTGG 2 cut(s) 826, 1080
XmaI CCCGGG 1 cut(s) 674
XmaJI CCTAGG 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.