Rorug03G0013500

Topless-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005953
Physical Location & Seq
Reverse (-)
1049977 .. 1051445
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0013500.1

Sequence Viewer

Length: 849 bp
ATGAAAATCCATATATATATAACATCAAACACTCACTGTAGAGATTCAACAACTCAAAATTGCAATATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGTGGTATTCCATGGACTAAGGAAGAGGATCAATTGCTGAGGAAATGCATAGAGAAGTATGGAGAAGGCAAATGGCATCGAATTCCTCACTTAGCCGGTCTAAACAGGTGCCGTAAGAGCTGCCGGCTTCGGTGGCTAAACTACCTTCGGCCGAACATCAAGAGAGGGAGCTTTGAACAAGAGGAAGTTGAGCTCATCATCAAGCTCCAAAGGCTCTTGGGAAACAGGTGGTCATTAGTTGCAGCTAGGCTTCCGGGGAGGACTGGTAATGATGTGAAGAACTATTGGAATTGTCACTTGAGCAAAAAGCTAAATGCTCAAGAAACTCATGGTGATCATCAGAAGATTAATCATGCAAGGAATAATAATTTACAAGTCATAAGACCCCAAGCTTCAAAATACGCCAGCTCAAACTCAAAGAGGTCAATGATAAGTAGTACTCTTGAGGATCAAACTTGCCAAGCCTCGGAAGAATGTAGCAAAGCATCAGTGGCAATGCTCTGCAATATTGATAAAGATCAGGGGCAGATCAGTCAGATAGTTGAGAGAGAGGATAGCAACAATCTATGTGTGGAAGAAGAACATGAGGGGAACAATGACTTCATGGGTGATTTGGGAATGGTAGACCTTGATCAATTTGAACAAATTATAGAGCAATATGATCAAGAGTTCAACAACAAAAACAAGAAATGGGAGTGGGATGACTCCATCTTGGACATGGACCTTTGGGTTACTGATTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box WD40

Protein Analysis

282

Amino Acids

33.08

Weight (kDa)

6.17

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 38 - 83 3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 39 - 98 6.5e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 89 - 133 3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 93 - 140 7.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 726
AclWI GGATC 2 cut(s) 138, 558
AcoI YGGCCR 1 cut(s) 251
AcsI RAATTY 1 cut(s) 183
AfaI GTAC 1 cut(s) 541
AfiI CCNNNNNNNGG 1 cut(s) 568
AgsI TTSAA 5 cut(s) 48, 278, 498, 743, 775
AluBI AGCT 8 cut(s) 222, 273, 295, 307, 347, 412, 494, 510
AluI AGCT 8 cut(s) 222, 273, 295, 307, 347, 412, 494, 510
Alw21I GWGCWC 1 cut(s) 297
AlwI GGATC 2 cut(s) 138, 558
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 222, 344
ApoI RAATTY 1 cut(s) 183
AseI ATTAAT 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 823
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 446, 722
AvaII GGWCC 1 cut(s) 823
BanI GGYRCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 209, 356
BccI CCATC 2 cut(s) 94, 818
BceAI ACGGC 1 cut(s) 198
BclI TGATCA 3 cut(s) 436, 733, 763
BcnI CCSGG 1 cut(s) 357
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 37
BisI GCNGC 2 cut(s) 223, 345
BlsI GCNGC 2 cut(s) 224, 346
BmcAI AGTACT 1 cut(s) 541
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 1 cut(s) 823
BmgT120I GGNCC 1 cut(s) 823
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 187, 596
Bpu10I CCTNAGC 1 cut(s) 140
BpuEI CTTGAG 3 cut(s) 405, 421, 566
BpuMI CCSGG 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 618
BsaJI CCNNGG 3 cut(s) 113, 356, 567
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 568
Bse118I RCCGGY 2 cut(s) 197, 225
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 603
Bse8I GATNNNNATC 1 cut(s) 618
BseDI CCNNGG 3 cut(s) 113, 356, 567
BseGI GGATG 1 cut(s) 808
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 1 cut(s) 568
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 370
BseX3I CGGCCG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 209, 356
Bsh1285I CGRYCG 1 cut(s) 254
BshFI GGCC 1 cut(s) 253
BshNI GGYRCC 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 3 cut(s) 198, 226, 356
BslI CCNNNNNNNGG 1 cut(s) 568
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 7 cut(s) 130, 436, 550, 619, 630, 733, 763
Bsp19I CCATGG 1 cut(s) 113
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 212
BspPI GGATC 2 cut(s) 138, 558
BspT107I GGYRCC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 603
BsrFI RCCGGY 2 cut(s) 197, 225
BsrI ACTGG 1 cut(s) 370
BssAI RCCGGY 2 cut(s) 197, 225
BssECI CCNNGG 3 cut(s) 113, 356, 567
BssMI GATC 7 cut(s) 130, 436, 550, 619, 630, 733, 763
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 227, 508
BstDEI CTNAG 3 cut(s) 120, 140, 193
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 808
BstKTI GATC 7 cut(s) 133, 439, 553, 622, 633, 736, 766
BstMBI GATC 7 cut(s) 130, 436, 550, 619, 630, 733, 763
BstMCI CGRYCG 1 cut(s) 254
BstMWI GCNNNNNNNGC 4 cut(s) 219, 235, 313, 593
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 209, 356
BstZI CGGCCG 1 cut(s) 251
BsuRI GGCC 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 808
BtsIMutI CAGTG 2 cut(s) 34, 597
Cac8I GCNNGC 2 cut(s) 227, 508
Cfr10I RCCGGY 2 cut(s) 197, 225
Cfr13I GGNCC 1 cut(s) 823
Csp6I GTAC 1 cut(s) 540
CviAII CATG 6 cut(s) 114, 431, 455, 686, 706, 820
CviQI GTAC 1 cut(s) 540
DdeI CTNAG 3 cut(s) 120, 140, 193
DpnI GATC 7 cut(s) 132, 438, 552, 621, 632, 735, 765
DpnII GATC 7 cut(s) 130, 436, 550, 619, 630, 733, 763
EaeI YGGCCR 1 cut(s) 251
EagI CGGCCG 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 295
EclXI CGGCCG 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 823
Eco52I CGGCCG 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 6 cut(s) 117, 434, 458, 689, 709, 823
FatI CATG 6 cut(s) 113, 430, 454, 685, 705, 819
FbaI TGATCA 3 cut(s) 436, 733, 763
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 2 cut(s) 223, 345
FokI GGATG 1 cut(s) 815
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 2 cut(s) 223, 345
FspBI CTAG 1 cut(s) 348
GluI GCNGC 2 cut(s) 223, 345
HaeIII GGCC 1 cut(s) 253
HapII CCGG 3 cut(s) 198, 226, 356
Hin1II CATG 6 cut(s) 117, 434, 458, 689, 709, 823
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 3 cut(s) 44, 806, 839
HpaII CCGG 3 cut(s) 198, 226, 356
HphI GGTGA 2 cut(s) 446, 722
Hpy166II GTNNAC 1 cut(s) 727
Hpy188I TCNGA 4 cut(s) 71, 444, 571, 639
Hpy188III TCNNGA 4 cut(s) 262, 422, 545, 767
Hpy8I GTNNAC 1 cut(s) 727
HpyAV CCTTC 2 cut(s) 161, 257
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 5 cut(s) 63, 150, 344, 458, 606
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 235, 313, 593
HpyF3I CTNAG 3 cut(s) 120, 140, 193
Hsp92II CATG 6 cut(s) 117, 434, 458, 689, 709, 823
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
Ksp22I TGATCA 3 cut(s) 436, 733, 763
Kzo9I GATC 7 cut(s) 130, 436, 550, 619, 630, 733, 763
LmnI GCTCC 2 cut(s) 270, 312
LpnPI CCDG 8 cut(s) 193, 211, 239, 313, 351, 369, 520, 608
Lsp1109I GCAGC 2 cut(s) 209, 356
LweI GCATC 2 cut(s) 187, 596
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 395, 832
MalI GATC 7 cut(s) 132, 438, 552, 621, 632, 735, 765
MboI GATC 7 cut(s) 130, 436, 550, 619, 630, 733, 763
MboII GAAGA 7 cut(s) 137, 391, 457, 584, 689, 692, 834
MfeI CAATTG 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 7 cut(s) 58, 134, 183, 391, 469, 737, 747
MlyI GAGTC 1 cut(s) 800
Mph1103I ATGCAT 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 225
MseI TTAA 1 cut(s) 450
MspI CCGG 3 cut(s) 198, 226, 356
MspR9I CCNGG 1 cut(s) 357
MunI CAATTG 1 cut(s) 134
MwoI GCNNNNNNNGC 4 cut(s) 219, 235, 313, 593
NaeI GCCGGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 357
NcoI CCATGG 1 cut(s) 113
NdeII GATC 7 cut(s) 130, 436, 550, 619, 630, 733, 763
NgoMIV GCCGGC 1 cut(s) 225
NlaIII CATG 6 cut(s) 117, 434, 458, 689, 709, 823
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 395
NsiI ATGCAT 1 cut(s) 152
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 44, 839
PkrI GCNGC 2 cut(s) 224, 346
PleI GAGTC 1 cut(s) 800
PpsI GAGTC 1 cut(s) 800
PshBI ATTAAT 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 823
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 2 cut(s) 223, 345
Sau3AI GATC 7 cut(s) 130, 436, 550, 619, 630, 733, 763
Sau96I GGNCC 1 cut(s) 823
ScaI AGTACT 1 cut(s) 541
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 297
SfaNI GCATC 2 cut(s) 187, 596
SfcI CTRYAG 1 cut(s) 37
SinI GGWCC 1 cut(s) 823
SmlI CTYRAG 3 cut(s) 400, 420, 545
SmoI CTYRAG 3 cut(s) 400, 420, 545
Sse9I AATT 7 cut(s) 58, 134, 183, 391, 469, 737, 747
SspI AATATT 1 cut(s) 610
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 181
TasI AATT 7 cut(s) 58, 134, 183, 391, 469, 737, 747
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 2 cut(s) 44, 839
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 2 cut(s) 41, 597
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 2 cut(s) 222, 344
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 3 cut(s) 17, 694, 834
TspRI CASTG 2 cut(s) 41, 597
VpaK11BI GGWCC 1 cut(s) 823
VspI ATTAAT 1 cut(s) 450
XapI RAATTY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 817
XmiI GTMKAC 1 cut(s) 726
XspI CTAG 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 541
Zsp2I ATGCAT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.