Topless-related protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G27030 AT5G27030 |
| fragaria_vesca | FvH4_6g07000 FvH4_6g07000 |
| malus_domestica | MD04G1197000.v1.1 MD12G1209900.v1.1 |
| prunus_persica | Prupe.6G317500_v2.0.a1 Prupe.6G317500_v2.0.a1 Prupe.6G317500_v2.0.a1 |
| pyrus_communis | pycom04g17420 pycom12g19730 |
| rosa_chinensis | RchiOBHm_Chr3g0456531 |
| rosa_laevigata | RLG00000025297 |
| rosa_multiflora | Rmu_sc0002607.1_g000006 Rmu_sc0017908.1_g000014 Rmu_sc0023184.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00422660 |
| rosa_rugosa | Rorug03G0013400 Rorug03G0013500 Rorug03G0013600 Rorug03G0013700 Rorug03G0013800 |
| rosa_samantha | Rh3AG074300 Rh3BG076000 Rh3CG075700 Rh3DG077800 |
| rosa_wichuraiana | Rw3G006360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1766 |
| Acc36I | ACCTGC | 2 cut(s) | 749, 1766 |
| AccB1I | GGYRCC | 1 cut(s) | 2623 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 46, 1345, 2465 |
| AccBSI | CCGCTC | 1 cut(s) | 494 |
| AccI | GTMKAC | 2 cut(s) | 2147, 3362 |
| AccII | CGCG | 2 cut(s) | 1141, 3380 |
| AccIII | TCCGGA | 1 cut(s) | 577 |
| AclWI | GGATC | 5 cut(s) | 1051, 2252, 2265, 3006, 3020 |
| AcoI | YGGCCR | 1 cut(s) | 768 |
| AcsI | RAATTY | 5 cut(s) | 132, 367, 742, 2250, 2940 |
| AcuI | CTGAAG | 1 cut(s) | 518 |
| AcyI | GRCGYC | 2 cut(s) | 2496, 2624 |
| AdeI | CACNNNGTG | 1 cut(s) | 2372 |
| AfaI | GTAC | 9 cut(s) | 75, 119, 167, 613, 1310, 1586, 1636, 3203, 3222 |
| AfeI | AGCGCT | 1 cut(s) | 2529 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 46, 78, 399, 701, 1345, 2465 |
| AflII | CTTAAG | 1 cut(s) | 440 |
| AflIII | ACRYGT | 1 cut(s) | 608 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1254 |
| AjiI | CACGTC | 1 cut(s) | 1251 |
| AjnI | CCWGG | 2 cut(s) | 1577, 2234 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2287, 2319 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3295, 3327 |
| Alw21I | GWGCWC | 1 cut(s) | 2135 |
| Alw26I | GTCTC | 6 cut(s) | 787, 1692, 2581, 2906, 2957, 3321 |
| AlwI | GGATC | 5 cut(s) | 1051, 2252, 2265, 3006, 3020 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 737, 2383 |
| Ama87I | CYCGRG | 2 cut(s) | 2338, 2916 |
| Aor13HI | TCCGGA | 1 cut(s) | 577 |
| Aor51HI | AGCGCT | 1 cut(s) | 2529 |
| AoxI | GGCC | 7 cut(s) | 625, 768, 1206, 1356, 1575, 2045, 2424 |
| ApeKI | GCWGC | 8 cut(s) | 420, 544, 731, 800, 881, 1988, 2446, 3053 |
| ApoI | RAATTY | 5 cut(s) | 132, 367, 742, 2250, 2940 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1370, 1402 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1750, 2514 |
| AspLEI | GCGC | 3 cut(s) | 2530, 2626, 3382 |
| AspS9I | GGNCC | 5 cut(s) | 626, 704, 1322, 1357, 2395 |
| AsuC2I | CCSGG | 1 cut(s) | 1073 |
| AsuHPI | GGTGA | 6 cut(s) | 1061, 1835, 2165, 2746, 2747, 2921 |
| AsuII | TTCGAA | 1 cut(s) | 222 |
| AvaI | CYCGRG | 2 cut(s) | 2338, 2916 |
| AvaII | GGWCC | 3 cut(s) | 704, 1322, 2395 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1215, 1248 |
| BalI | TGGCCA | 1 cut(s) | 770 |
| BamHI | GGATCC | 1 cut(s) | 2257 |
| BanI | GGYRCC | 1 cut(s) | 2623 |
| BanII | GRGCYC | 1 cut(s) | 2135 |
| BauI | CACGAG | 1 cut(s) | 2960 |
| BbsI | GAAGAC | 1 cut(s) | 2462 |
| Bbv12I | GWGCWC | 1 cut(s) | 2135 |
| BbvCI | CCTCAGC | 1 cut(s) | 1887 |
| BbvI | GCAGC | 8 cut(s) | 432, 556, 743, 812, 868, 1975, 2433, 3065 |
| BccI | CCATC | 9 cut(s) | 760, 1256, 1556, 2664, 2690, 2711, 2989, 3163, 3257 |
| BceAI | ACGGC | 5 cut(s) | 429, 788, 1147, 1227, 3129 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2064, 2098 |
| BciT130I | CCWGG | 2 cut(s) | 1579, 2236 |
| BclI | TGATCA | 5 cut(s) | 601, 898, 913, 2170, 3385 |
| BcnI | CCSGG | 1 cut(s) | 1073 |
| BcoDI | GTCTC | 6 cut(s) | 787, 1692, 2581, 2906, 2957, 3321 |
| BfaI | CTAG | 9 cut(s) | 978, 1094, 1623, 1709, 2142, 2276, 2307, 2648, 2972 |
| BfmI | CTRYAG | 1 cut(s) | 1956 |
| BfoI | RGCGCY | 2 cut(s) | 2531, 2627 |
| BfrI | CTTAAG | 1 cut(s) | 440 |
| BfuAI | ACCTGC | 2 cut(s) | 749, 1766 |
| BmcAI | AGTACT | 2 cut(s) | 119, 167 |
| Bme1390I | CCNGG | 3 cut(s) | 1073, 1579, 2236 |
| Bme18I | GGWCC | 3 cut(s) | 704, 1322, 2395 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1254 |
| BmeT110I | CYCGRG | 2 cut(s) | 2338, 2916 |
| BmgBI | CACGTC | 1 cut(s) | 1251 |
| BmgT120I | GGNCC | 5 cut(s) | 626, 704, 1322, 1357, 2395 |
| BmiI | GGNNCC | 3 cut(s) | 2259, 2396, 2625 |
| BmrFI | CCNGG | 3 cut(s) | 1073, 1579, 2236 |
| BmrI | ACTGGG | 1 cut(s) | 3235 |
| BmuI | ACTGGG | 1 cut(s) | 3235 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1662 |
| BpiI | GAAGAC | 1 cut(s) | 2462 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1685, 1717, 1894, 1926 |
| BpmI | CTGGAG | 4 cut(s) | 162, 645, 861, 2013 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1887 |
| Bpu14I | TTCGAA | 1 cut(s) | 222 |
| BpuEI | CTTGAG | 3 cut(s) | 104, 1936, 2646 |
| BpuMI | CCSGG | 1 cut(s) | 1073 |
| BsaHI | GRCGYC | 2 cut(s) | 2496, 2624 |
| BsaI | GGTCTC | 1 cut(s) | 2581 |
| BsaJI | CCNNGG | 2 cut(s) | 841, 2234 |
| BsaWI | WCCGGW | 3 cut(s) | 577, 1460, 2813 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 625, 655 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 46, 78, 399, 701, 1345, 2465 |
| Bse118I | RCCGGY | 1 cut(s) | 2271 |
| BseAI | TCCGGA | 1 cut(s) | 577 |
| BseBI | CCWGG | 2 cut(s) | 1579, 2236 |
| BseDI | CCNNGG | 2 cut(s) | 841, 2234 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 46, 78, 399, 701, 1345, 2465 |
| BseMII | CTCAG | 6 cut(s) | 792, 1774, 1878, 2189, 2191, 3151 |
| BseRI | GAGGAG | 4 cut(s) | 68, 648, 971, 2619 |
| BseXI | GCAGC | 8 cut(s) | 432, 556, 743, 812, 868, 1975, 2433, 3065 |
| BsgI | GTGCAG | 6 cut(s) | 750, 1674, 1805, 2396, 2942, 3021 |
| Bsh1236I | CGCG | 2 cut(s) | 1141, 3380 |
| Bsh1285I | CGRYCG | 1 cut(s) | 726 |
| BshFI | GGCC | 7 cut(s) | 627, 770, 1208, 1358, 1577, 2047, 2426 |
| BshNI | GGYRCC | 1 cut(s) | 2623 |
| BsiEI | CGRYCG | 1 cut(s) | 726 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2135 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2338, 2916 |
| BsiSI | CCGG | 6 cut(s) | 578, 1073, 1461, 2079, 2272, 2814 |
| BslFI | GGGAC | 2 cut(s) | 164, 416 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 46, 78, 399, 701, 1345, 2465 |
| BsmAI | GTCTC | 6 cut(s) | 787, 1692, 2581, 2906, 2957, 3321 |
| BsmBI | CGTCTC | 1 cut(s) | 3321 |
| BsmFI | GGGAC | 2 cut(s) | 164, 416 |
| BsmI | GAATGC | 1 cut(s) | 2651 |
| BsnI | GGCC | 7 cut(s) | 627, 770, 1208, 1358, 1577, 2047, 2426 |
| Bso31I | GGTCTC | 1 cut(s) | 2581 |
| BsoBI | CYCGRG | 2 cut(s) | 2338, 2916 |
| Bsp119I | TTCGAA | 1 cut(s) | 222 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2135 |
| Bsp13I | TCCGGA | 1 cut(s) | 577 |
| Bsp1407I | TGTACA | 1 cut(s) | 611 |
| BspANI | GGCC | 7 cut(s) | 627, 770, 1208, 1358, 1577, 2047, 2426 |
| BspCNI | CTCAG | 6 cut(s) | 791, 1773, 1879, 2190, 2190, 3150 |
| BspEI | TCCGGA | 1 cut(s) | 577 |
| BspFNI | CGCG | 2 cut(s) | 1141, 3380 |
| BspHI | TCATGA | 2 cut(s) | 916, 1489 |
| BspLI | GGNNCC | 3 cut(s) | 2259, 2396, 2625 |
| BspMAI | CTGCAG | 1 cut(s) | 1960 |
| BspMI | ACCTGC | 2 cut(s) | 749, 1766 |
| BspPI | GGATC | 5 cut(s) | 1051, 2252, 2265, 3006, 3020 |
| BspT104I | TTCGAA | 1 cut(s) | 222 |
| BspT107I | GGYRCC | 1 cut(s) | 2623 |
| BspTI | CTTAAG | 1 cut(s) | 440 |
| BspTNI | GGTCTC | 1 cut(s) | 2581 |
| BsrBI | CCGCTC | 1 cut(s) | 494 |
| BsrFI | RCCGGY | 1 cut(s) | 2271 |
| BsrGI | TGTACA | 1 cut(s) | 611 |
| BssAI | RCCGGY | 1 cut(s) | 2271 |
| BssECI | CCNNGG | 2 cut(s) | 841, 2234 |
| BssNI | GRCGYC | 2 cut(s) | 2496, 2624 |
| BssSI | CACGAG | 1 cut(s) | 2960 |
| BssT1I | CCWWGG | 1 cut(s) | 841 |
| Bst2BI | CACGAG | 1 cut(s) | 2960 |
| Bst2UI | CCWGG | 2 cut(s) | 1579, 2236 |
| Bst6I | CTCTTC | 4 cut(s) | 45, 120, 790, 2744 |
| BstACI | GRCGYC | 2 cut(s) | 2496, 2624 |
| BstAFI | CTTAAG | 1 cut(s) | 440 |
| BstAUI | TGTACA | 1 cut(s) | 611 |
| BstBI | TTCGAA | 1 cut(s) | 222 |
| BstC8I | GCNNGC | 5 cut(s) | 418, 798, 2273, 2347, 2494 |
| BstDEI | CTNAG | 9 cut(s) | 289, 778, 1381, 1760, 1887, 2177, 2198, 3131, 3137 |
| BstFNI | CGCG | 2 cut(s) | 1141, 3380 |
| BstH2I | RGCGCY | 2 cut(s) | 2531, 2627 |
| BstHHI | GCGC | 3 cut(s) | 2530, 2626, 3382 |
| BstMAI | GTCTC | 6 cut(s) | 787, 1692, 2581, 2906, 2957, 3321 |
| BstMCI | CGRYCG | 1 cut(s) | 726 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 268, 500, 674, 1911, 2072, 2438, 2452, 3158 |
| BstNI | CCWGG | 2 cut(s) | 1579, 2236 |
| BstNSI | RCATGY | 2 cut(s) | 612, 2287 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1662 |
| BstSCI | CCNGG | 3 cut(s) | 1071, 1577, 2234 |
| BstSFI | CTRYAG | 1 cut(s) | 1956 |
| BstUI | CGCG | 2 cut(s) | 1141, 3380 |
| BstV1I | GCAGC | 8 cut(s) | 432, 556, 743, 812, 868, 1975, 2433, 3065 |
| BstV2I | GAAGAC | 1 cut(s) | 2462 |
| BstX2I | RGATCY | 3 cut(s) | 1043, 2257, 3025 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1021, 2689 |
| BstYI | RGATCY | 3 cut(s) | 1043, 2257, 3025 |
| BsuRI | GGCC | 7 cut(s) | 627, 770, 1208, 1358, 1577, 2047, 2426 |
| BtgZI | GCGATG | 1 cut(s) | 3276 |
| BtrI | CACGTC | 1 cut(s) | 1251 |
| BtsI | GCAGTG | 4 cut(s) | 684, 1193, 2061, 2427 |
| BveI | ACCTGC | 2 cut(s) | 749, 1766 |
| Cac8I | GCNNGC | 5 cut(s) | 418, 798, 2273, 2347, 2494 |
| CaiI | CAGNNNCTG | 2 cut(s) | 737, 2383 |
| CciI | TCATGA | 2 cut(s) | 916, 1489 |
| CfoI | GCGC | 3 cut(s) | 2530, 2626, 3382 |
| Cfr10I | RCCGGY | 1 cut(s) | 2271 |
| Cfr13I | GGNCC | 5 cut(s) | 626, 704, 1322, 1357, 2395 |
| CseI | GACGC | 2 cut(s) | 2194, 2485 |
| Csp6I | GTAC | 9 cut(s) | 74, 118, 166, 612, 1309, 1585, 1635, 3202, 3221 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2014, 2049 |
| CviQI | GTAC | 9 cut(s) | 74, 118, 166, 612, 1309, 1585, 1635, 3202, 3221 |
| DdeI | CTNAG | 9 cut(s) | 289, 778, 1381, 1760, 1887, 2177, 2198, 3131, 3137 |
| DinI | GGCGCC | 1 cut(s) | 2625 |
| DraIII | CACNNNGTG | 1 cut(s) | 2372 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1254 |
| EaeI | YGGCCR | 1 cut(s) | 768 |
| Eam1104I | CTCTTC | 4 cut(s) | 45, 120, 790, 2744 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1254 |
| EarI | CTCTTC | 4 cut(s) | 45, 120, 790, 2744 |
| EciI | GGCGGA | 1 cut(s) | 2583 |
| Ecl136II | GAGCTC | 1 cut(s) | 2133 |
| Eco130I | CCWWGG | 1 cut(s) | 841 |
| Eco147I | AGGCCT | 2 cut(s) | 1577, 2047 |
| Eco24I | GRGCYC | 1 cut(s) | 2135 |
| Eco31I | GGTCTC | 1 cut(s) | 2581 |
| Eco47I | GGWCC | 3 cut(s) | 704, 1322, 2395 |
| Eco47III | AGCGCT | 1 cut(s) | 2529 |
| Eco53kI | GAGCTC | 1 cut(s) | 2133 |
| Eco57I | CTGAAG | 1 cut(s) | 518 |
| Eco88I | CYCGRG | 2 cut(s) | 2338, 2916 |
| EcoICRI | GAGCTC | 1 cut(s) | 2133 |
| EcoRI | GAATTC | 1 cut(s) | 742 |
| EcoRII | CCWGG | 2 cut(s) | 1577, 2234 |
| EcoT14I | CCWWGG | 1 cut(s) | 841 |
| EcoT22I | ATGCAT | 2 cut(s) | 817, 2525 |
| EcoT38I | GRGCYC | 1 cut(s) | 2135 |
| EgeI | GGCGCC | 1 cut(s) | 2625 |
| EheI | GGCGCC | 1 cut(s) | 2625 |
| ErhI | CCWWGG | 1 cut(s) | 841 |
| Esp3I | CGTCTC | 1 cut(s) | 3321 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1923, 1955, 3015, 3047 |
| FaqI | GGGAC | 2 cut(s) | 164, 416 |
| FauI | CCCGC | 3 cut(s) | 499, 1134, 3213 |
| FauNDI | CATATG | 1 cut(s) | 2883 |
| FbaI | TGATCA | 5 cut(s) | 601, 898, 913, 2170, 3385 |
| FblI | GTMKAC | 2 cut(s) | 2147, 3362 |
| FriOI | GRGCYC | 1 cut(s) | 2135 |
| FspBI | CTAG | 9 cut(s) | 978, 1094, 1623, 1709, 2142, 2276, 2307, 2648, 2972 |
| GlaI | GCGC | 3 cut(s) | 2529, 2625, 3381 |
| GsuI | CTGGAG | 4 cut(s) | 162, 645, 861, 2013 |
| HaeII | RGCGCY | 2 cut(s) | 2531, 2627 |
| HaeIII | GGCC | 7 cut(s) | 627, 770, 1208, 1358, 1577, 2047, 2426 |
| HapII | CCGG | 6 cut(s) | 578, 1073, 1461, 2079, 2272, 2814 |
| HgaI | GACGC | 2 cut(s) | 2194, 2485 |
| HhaI | GCGC | 3 cut(s) | 2530, 2626, 3382 |
| Hin1I | GRCGYC | 2 cut(s) | 2496, 2624 |
| Hin6I | GCGC | 3 cut(s) | 2528, 2624, 3380 |
| HinP1I | GCGC | 3 cut(s) | 2528, 2624, 3380 |
| HincII | GTYRAC | 5 cut(s) | 1609, 2244, 2281, 2500, 3328 |
| HindII | GTYRAC | 5 cut(s) | 1609, 2244, 2281, 2500, 3328 |
| HindIII | AAGCTT | 1 cut(s) | 479 |
| HpaI | GTTAAC | 1 cut(s) | 2281 |
| HpaII | CCGG | 6 cut(s) | 578, 1073, 1461, 2079, 2272, 2814 |
| HphI | GGTGA | 6 cut(s) | 1061, 1835, 2165, 2746, 2747, 2921 |
| Hpy99I | CGWCG | 2 cut(s) | 2210, 3361 |
| HpyAV | CCTTC | 7 cut(s) | 268, 493, 705, 1478, 1724, 1925, 3293 |
| HpyCH4IV | ACGT | 5 cut(s) | 862, 974, 1085, 1250, 1311 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 268, 500, 674, 1911, 2072, 2438, 2452, 3158 |
| HpyF3I | CTNAG | 9 cut(s) | 289, 778, 1381, 1760, 1887, 2177, 2198, 3131, 3137 |
| HpySE526I | ACGT | 5 cut(s) | 862, 974, 1085, 1250, 1311 |
| Hsp92I | GRCGYC | 2 cut(s) | 2496, 2624 |
| HspAI | GCGC | 3 cut(s) | 2528, 2624, 3380 |
| KasI | GGCGCC | 1 cut(s) | 2623 |
| Kpn2I | TCCGGA | 1 cut(s) | 577 |
| KroI | GCCGGC | 1 cut(s) | 2271 |
| KroNI | GCCGGC | 1 cut(s) | 2273 |
| Ksp22I | TGATCA | 5 cut(s) | 601, 898, 913, 2170, 3385 |
| KspAI | GTTAAC | 1 cut(s) | 2281 |
| Lsp1109I | GCAGC | 8 cut(s) | 432, 556, 743, 812, 868, 1975, 2433, 3065 |
| MaeI | CTAG | 9 cut(s) | 978, 1094, 1623, 1709, 2142, 2276, 2307, 2648, 2972 |
| MaeII | ACGT | 5 cut(s) | 862, 974, 1085, 1250, 1311 |
| MbiI | CCGCTC | 1 cut(s) | 494 |
| MfeI | CAATTG | 1 cut(s) | 2113 |
| MflI | RGATCY | 3 cut(s) | 1043, 2257, 3025 |
| MhlI | GDGCHC | 1 cut(s) | 2135 |
| MlsI | TGGCCA | 1 cut(s) | 770 |
| MluNI | TGGCCA | 1 cut(s) | 770 |
| Mly113I | GGCGCC | 1 cut(s) | 2624 |
| MmeI | TCCRAC | 4 cut(s) | 743, 995, 2438, 3031 |
| Mox20I | TGGCCA | 1 cut(s) | 770 |
| Mph1103I | ATGCAT | 2 cut(s) | 817, 2525 |
| MroI | TCCGGA | 1 cut(s) | 577 |
| MroNI | GCCGGC | 1 cut(s) | 2271 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1750, 2514 |
| MscI | TGGCCA | 1 cut(s) | 770 |
| MslI | CAYNNNNRTG | 5 cut(s) | 906, 1058, 1365, 2687, 3110 |
| Msp20I | TGGCCA | 1 cut(s) | 770 |
| MspA1I | CMGCKG | 4 cut(s) | 737, 881, 2446, 3208 |
| MspCI | CTTAAG | 1 cut(s) | 440 |
| MspI | CCGG | 6 cut(s) | 578, 1073, 1461, 2079, 2272, 2814 |
| MspR9I | CCNGG | 3 cut(s) | 1073, 1579, 2236 |
| MunI | CAATTG | 1 cut(s) | 2113 |
| Mva1269I | GAATGC | 1 cut(s) | 2651 |
| MvaI | CCWGG | 2 cut(s) | 1579, 2236 |
| MvnI | CGCG | 2 cut(s) | 1141, 3380 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 268, 500, 674, 1911, 2072, 2438, 2452, 3158 |
| NaeI | GCCGGC | 1 cut(s) | 2273 |
| NarI | GGCGCC | 1 cut(s) | 2624 |
| NciI | CCSGG | 1 cut(s) | 1073 |
| NdeI | CATATG | 1 cut(s) | 2883 |
| NgoMIV | GCCGGC | 1 cut(s) | 2271 |
| NlaIV | GGNNCC | 3 cut(s) | 2259, 2396, 2625 |
| NmeAIII | GCCGAG | 1 cut(s) | 2063 |
| NmuCI | GTSAC | 8 cut(s) | 996, 1051, 1246, 1417, 1948, 2364, 2753, 3095 |
| NsiI | ATGCAT | 2 cut(s) | 817, 2525 |
| NspI | RCATGY | 2 cut(s) | 612, 2287 |
| NspV | TTCGAA | 1 cut(s) | 222 |
| PaeR7I | CTCGAG | 1 cut(s) | 2916 |
| PagI | TCATGA | 2 cut(s) | 916, 1489 |
| PaqCI | CACCTGC | 1 cut(s) | 1766 |
| PceI | AGGCCT | 2 cut(s) | 1577, 2047 |
| PciI | ACATGT | 1 cut(s) | 608 |
| PctI | GAATGC | 1 cut(s) | 2651 |
| PdiI | GCCGGC | 1 cut(s) | 2273 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1750, 2514 |
| PfeI | GAWTC | 8 cut(s) | 92, 99, 1300, 1920, 1968, 2057, 2696, 3293 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 46, 1345, 2465 |
| PluTI | GGCGCC | 1 cut(s) | 2627 |
| PscI | ACATGT | 1 cut(s) | 608 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1662 |
| Psp124BI | GAGCTC | 1 cut(s) | 2135 |
| Psp6I | CCWGG | 2 cut(s) | 1577, 2234 |
| PspGI | CCWGG | 2 cut(s) | 1577, 2234 |
| PspN4I | GGNNCC | 3 cut(s) | 2259, 2396, 2625 |
| PspPI | GGNCC | 5 cut(s) | 626, 704, 1322, 1357, 2395 |
| PspXI | VCTCGAGB | 1 cut(s) | 2916 |
| PstI | CTGCAG | 1 cut(s) | 1960 |
| PstNI | CAGNNNCTG | 2 cut(s) | 737, 2383 |
| PsuI | RGATCY | 3 cut(s) | 1043, 2257, 3025 |
| PvuII | CAGCTG | 1 cut(s) | 881 |
| RsaI | GTAC | 9 cut(s) | 75, 119, 167, 613, 1310, 1586, 1636, 3203, 3222 |
| RsaNI | GTAC | 9 cut(s) | 74, 118, 166, 612, 1309, 1585, 1635, 3202, 3221 |
| RseI | CAYNNNNRTG | 5 cut(s) | 906, 1058, 1365, 2687, 3110 |
| SacI | GAGCTC | 1 cut(s) | 2135 |
| Sau96I | GGNCC | 5 cut(s) | 626, 704, 1322, 1357, 2395 |
| ScaI | AGTACT | 2 cut(s) | 119, 167 |
| ScrFI | CCNGG | 3 cut(s) | 1073, 1579, 2236 |
| SduI | GDGCHC | 1 cut(s) | 2135 |
| SfcI | CTRYAG | 1 cut(s) | 1956 |
| SfoI | GGCGCC | 1 cut(s) | 2625 |
| Sfr274I | CTCGAG | 1 cut(s) | 2916 |
| SfuI | TTCGAA | 1 cut(s) | 222 |
| SinI | GGWCC | 3 cut(s) | 704, 1322, 2395 |
| SlaI | CTCGAG | 1 cut(s) | 2916 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 906, 1058, 1365, 2687, 3110 |
| SmlI | CTYRAG | 5 cut(s) | 83, 440, 1915, 2661, 2916 |
| SmoI | CTYRAG | 5 cut(s) | 83, 440, 1915, 2661, 2916 |
| SseBI | AGGCCT | 2 cut(s) | 1577, 2047 |
| SspDI | GGCGCC | 1 cut(s) | 2623 |
| SspMI | CTAG | 9 cut(s) | 978, 1094, 1623, 1709, 2142, 2276, 2307, 2648, 2972 |
| SstI | GAGCTC | 1 cut(s) | 2135 |
| StuI | AGGCCT | 2 cut(s) | 1577, 2047 |
| StyD4I | CCNGG | 3 cut(s) | 1071, 1577, 2234 |
| StyI | CCWWGG | 1 cut(s) | 841 |
| TaiI | ACGT | 5 cut(s) | 865, 977, 1088, 1253, 1314 |
| TaqII | GACCGA | 1 cut(s) | 712 |
| TatI | WGTACW | 4 cut(s) | 117, 165, 611, 3220 |
| TauI | GCSGC | 3 cut(s) | 671, 737, 3089 |
| TfiI | GAWTC | 8 cut(s) | 92, 99, 1300, 1920, 1968, 2057, 2696, 3293 |
| TseFI | GTSAC | 8 cut(s) | 996, 1051, 1246, 1417, 1948, 2364, 2753, 3095 |
| TseI | GCWGC | 8 cut(s) | 420, 544, 731, 800, 881, 1988, 2446, 3053 |
| Tsp45I | GTSAC | 8 cut(s) | 996, 1051, 1246, 1417, 1948, 2364, 2753, 3095 |
| TspGWI | ACGGA | 6 cut(s) | 61, 1674, 1980, 2387, 3201, 3348 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 46, 1345, 2465 |
| Vha464I | CTTAAG | 1 cut(s) | 440 |
| VpaK11BI | GGWCC | 3 cut(s) | 704, 1322, 2395 |
| XapI | RAATTY | 5 cut(s) | 132, 367, 742, 2250, 2940 |
| XbaI | TCTAGA | 1 cut(s) | 977 |
| XceI | RCATGY | 2 cut(s) | 612, 2287 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 3205, 3248 |
| XhoI | CTCGAG | 1 cut(s) | 2916 |
| XmiI | GTMKAC | 2 cut(s) | 2147, 3362 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1750, 2514 |
| XspI | CTAG | 9 cut(s) | 978, 1094, 1623, 1709, 2142, 2276, 2307, 2648, 2972 |
| ZrmI | AGTACT | 2 cut(s) | 119, 167 |
| Zsp2I | ATGCAT | 2 cut(s) | 817, 2525 |