FvH4_6g11480

Protein-lysine methyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
6886121 .. 6889396
3276 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11480.t6

Sequence Viewer

Length: 411 bp
ATGGACATAGCTCTCTTTTCCCCATCTTCGCTTTTTGCAAACGACGATGACTCTTCCGGTGAGGAAACCACAGAGACCCAGCAAAGCTTCGTAGAGAGGAAGCATCAGTTTCCTGGAATGGAGTTGATGGTTCGAGAATTTTCATTTCATCAGCTGAATGCCAATTTACTTTGGCCTGGAACATTTGCATTTGCGGAATGGTTAGTTCAAAACAGGCCATTGATTGAGGGACGACATTGTATTGAACTGGGCAGTGGTACTGGTGCTTTGGCTATTTTCCTACGAAGATTGTGTAATCTTGACATCACTACATCAGACTATAATGATCAAGAAATTGAAGAGAATATAGCTTACAACTGCAGGATACCTGGGGTGACGGCTTCCCCTGTAGTGATCCAGACTGGGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

15.24

Weight (kDa)

4.45

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 15 - 136 4.4e-13 Lysine methyltransferase
Methyltransf_23 PF13489 35 - 135 6.5e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 194
AclWI GGATC 1 cut(s) 388
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 1 cut(s) 259
AgsI TTSAA 3 cut(s) 209, 245, 338
AjnI CCWGG 3 cut(s) 112, 175, 367
AluBI AGCT 4 cut(s) 11, 87, 154, 350
AluI AGCT 4 cut(s) 11, 87, 154, 350
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 1 cut(s) 388
AoxI GGCC 2 cut(s) 173, 215
ApoI RAATTY 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 405
AsuHPI GGTGA 2 cut(s) 71, 385
AvaII GGWCC 1 cut(s) 405
BccI CCATC 2 cut(s) 31, 121
BceAI ACGGC 1 cut(s) 393
BciT130I CCWGG 3 cut(s) 114, 177, 369
BciVI GTATCC 1 cut(s) 357
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 68
BfmI CTRYAG 2 cut(s) 358, 387
BfuI GTATCC 1 cut(s) 357
Bme1390I CCNGG 3 cut(s) 114, 177, 369
Bme18I GGWCC 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 3 cut(s) 114, 177, 369
BmrI ACTGGG 2 cut(s) 257, 411
BmsI GCATC 1 cut(s) 112
BmuI ACTGGG 2 cut(s) 257, 411
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 368
BsaWI WCCGGW 1 cut(s) 56
Bse1I ACTGG 3 cut(s) 252, 265, 406
BseBI CCWGG 3 cut(s) 114, 177, 369
BseDI CCNNGG 1 cut(s) 368
BseNI ACTGG 3 cut(s) 252, 265, 406
BseYI CCCAGC 1 cut(s) 78
BshFI GGCC 2 cut(s) 175, 217
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 2 cut(s) 175, 217
Bso31I GGTCTC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 325, 393
BspACI CCGC 1 cut(s) 194
BspANI GGCC 2 cut(s) 175, 217
BspLI GGNNCC 1 cut(s) 406
BspMAI CTGCAG 1 cut(s) 362
BspPI GGATC 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 68
BsrI ACTGG 3 cut(s) 252, 265, 406
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 2 cut(s) 325, 393
Bst2UI CCWGG 3 cut(s) 114, 177, 369
Bst6I CTCTTC 2 cut(s) 58, 333
BstKTI GATC 2 cut(s) 328, 396
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 2 cut(s) 325, 393
BstNI CCWGG 3 cut(s) 114, 177, 369
BstSCI CCNGG 3 cut(s) 112, 175, 367
BstSFI CTRYAG 2 cut(s) 358, 387
BsuI GTATCC 1 cut(s) 357
BsuRI GGCC 2 cut(s) 175, 217
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 405
Csp6I GTAC 1 cut(s) 258
CviJI RGCY 8 cut(s) 11, 87, 154, 175, 217, 272, 350, 380
CviKI_1 RGCY 8 cut(s) 11, 87, 154, 175, 217, 272, 350, 380
CviQI GTAC 1 cut(s) 258
DpnI GATC 2 cut(s) 327, 395
DpnII GATC 2 cut(s) 325, 393
Eam1104I CTCTTC 2 cut(s) 58, 333
EarI CTCTTC 2 cut(s) 58, 333
Eco31I GGTCTC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 405
EcoRII CCWGG 3 cut(s) 112, 175, 367
FaiI YATR 3 cut(s) 8, 321, 347
FaqI GGGAC 1 cut(s) 243
FbaI TGATCA 1 cut(s) 325
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 2 cut(s) 175, 217
HapII CCGG 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 71, 385
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 4 cut(s) 134, 299, 329, 397
Hpy99I CGWCG 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 38, 188, 360
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 2 cut(s) 325, 393
LweI GCATC 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 373
MalI GATC 2 cut(s) 327, 395
MboI GATC 2 cut(s) 325, 393
MboII GAAGA 4 cut(s) 18, 45, 297, 350
MluCI AATT 3 cut(s) 137, 163, 333
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 3 cut(s) 55, 90, 220
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 3 cut(s) 114, 177, 369
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 3 cut(s) 114, 177, 369
NdeII GATC 2 cut(s) 325, 393
NlaIV GGNNCC 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 373
PctI GAATGC 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 112
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 405
Psp6I CCWGG 3 cut(s) 112, 175, 367
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 3 cut(s) 112, 175, 367
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 1 cut(s) 405
PspPPI RGGWCCY 1 cut(s) 405
PstI CTGCAG 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 325, 393
Sau96I GGNCC 1 cut(s) 405
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 3 cut(s) 114, 177, 369
SetI ASST 6 cut(s) 13, 89, 156, 352, 370, 410
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 2 cut(s) 358, 387
SinI GGWCC 1 cut(s) 405
Sse9I AATT 3 cut(s) 137, 163, 333
SsiI CCGC 1 cut(s) 194
StyD4I CCNGG 3 cut(s) 112, 175, 367
TaqI TCGA 1 cut(s) 133
TasI AATT 3 cut(s) 137, 163, 333
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 373
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 2 cut(s) 132, 137
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 405
XapI RAATTY 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.