Rroxscaffold_6G00416860

Protein-lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005150
Physical Location & Seq
Reverse (-)
38724278 .. 38727197
2920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416860.1

Sequence Viewer

Length: 720 bp
ATGGACATAGCTCTCTTTTCCCCATCTTCCCTTTTTGCCAACGACGACGACTCTTCCAGTGGTGAGGAAAACACAGAGACCCAGCAAAGCTTCGTAGAGAGGAAGCATCAGTTTCCTGGAATGGGATTGATCGTTCGAGAATTTTCATTTTATCAGCTGAATGCCAATTTACTCTGGCCGGGGACATATGCATTTGCAGAATGTGGTACTGGTGCTTTGGCCATTTTCCTACGAAGATTGTGTAATCTTGACATCACTACATCAGACTATAATGATCAAGAAATTGAAGAGAATATAGCTTACAACTGCAGGGTAAATGGAATTGCACCTGCTCTCCCTCATATAAAGCATACCTGGGGTGACAGCTTCCCCAATAGGGATCCAGACTGGGACCTAATTATTGCGAGTGATATCTTATTGTATGTGAAACAGTATCCAAATTTGATAAAAACTCTTTCGTTTCTCCTCACATCTTATAAGCCAAAGGAGAATGAATCACAGCCTCGACCCAAGGATGAGCCAACTGGTAGACAATCTTTCAGTTTACCTCGGCCATCCTTTCTGATGAGTTGGAGACGAAGAATTGGAAAAGAGGACGAATCACTGTTCTTCACGGGGTGTGAGGATTCTGGTCTTGAAGTAAAGCATCTGGGATCCCCGGTGTATTGCATCAAACCTAGAGAAACTACTACAAACGGCGACCAAATAGTGAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

239

Amino Acids

27.15

Weight (kDa)

4.91

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 69 - 157 7.4e-07 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AarI CACCTGC 1 cut(s) 337
Acc36I ACCTGC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 529
AclWI GGATC 4 cut(s) 374, 387, 648, 661
AcoI YGGCCR 3 cut(s) 176, 219, 551
AcsI RAATTY 3 cut(s) 140, 439, 712
AdeI CACNNNGTG 1 cut(s) 618
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 122, 376
AgsI TTSAA 2 cut(s) 287, 638
AjnI CCWGG 2 cut(s) 115, 353
AloI GAACNNNNNNTCC 2 cut(s) 117, 149
AluBI AGCT 5 cut(s) 11, 90, 157, 299, 366
AluI AGCT 5 cut(s) 11, 90, 157, 299, 366
Alw26I GTCTC 2 cut(s) 71, 568
AlwI GGATC 4 cut(s) 374, 387, 648, 661
AoxI GGCC 3 cut(s) 176, 219, 551
ApoI RAATTY 3 cut(s) 140, 439, 712
AspS9I GGNCC 1 cut(s) 391
AsuC2I CCSGG 2 cut(s) 180, 659
AsuHPI GGTGA 2 cut(s) 74, 371
AvaII GGWCC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 221
BamHI GGATCC 2 cut(s) 379, 653
BccI CCATC 2 cut(s) 31, 562
BceAI ACGGC 1 cut(s) 712
BciT130I CCWGG 2 cut(s) 117, 355
BciVI GTATCC 1 cut(s) 444
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 2 cut(s) 180, 659
BcoDI GTCTC 2 cut(s) 71, 568
BfaI CTAG 1 cut(s) 678
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 337
BfuI GTATCC 1 cut(s) 444
Bme1390I CCNGG 4 cut(s) 117, 180, 355, 659
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 3 cut(s) 381, 392, 655
BmrFI CCNGG 4 cut(s) 117, 180, 355, 659
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 3 cut(s) 115, 655, 678
BmuI ACTGGG 1 cut(s) 397
BpuMI CCSGG 2 cut(s) 180, 659
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 5 cut(s) 179, 354, 510, 548, 657
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 376
Bse1I ACTGG 4 cut(s) 57, 214, 392, 529
BseBI CCWGG 2 cut(s) 117, 355
BseDI CCNNGG 5 cut(s) 179, 354, 510, 548, 657
BseGI GGATG 2 cut(s) 520, 554
BseLI CCNNNNNNNGG 2 cut(s) 122, 376
BseNI ACTGG 4 cut(s) 57, 214, 392, 529
BseRI GAGGAG 1 cut(s) 455
BseYI CCCAGC 1 cut(s) 81
BshFI GGCC 3 cut(s) 178, 221, 553
BsiSI CCGG 2 cut(s) 179, 659
BslFI GGGAC 2 cut(s) 196, 404
BslI CCNNNNNNNGG 2 cut(s) 122, 376
BsmAI GTCTC 2 cut(s) 71, 568
BsmBI CGTCTC 1 cut(s) 568
BsmFI GGGAC 2 cut(s) 196, 404
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 3 cut(s) 178, 221, 553
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 4 cut(s) 129, 274, 379, 653
BspANI GGCC 3 cut(s) 178, 221, 553
BspLI GGNNCC 3 cut(s) 381, 392, 655
BspMAI CTGCAG 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 4 cut(s) 374, 387, 648, 661
BspTNI GGTCTC 1 cut(s) 71
BsrI ACTGG 4 cut(s) 57, 214, 392, 529
BssECI CCNNGG 5 cut(s) 179, 354, 510, 548, 657
BssMI GATC 4 cut(s) 129, 274, 379, 653
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 2 cut(s) 117, 355
Bst4CI ACNGT 2 cut(s) 432, 606
Bst6I CTCTTC 2 cut(s) 58, 282
BstDEI CTNAG 1 cut(s) 717
BstF5I GGATG 2 cut(s) 520, 554
BstKTI GATC 4 cut(s) 132, 277, 382, 656
BstMAI GTCTC 2 cut(s) 71, 568
BstMBI GATC 4 cut(s) 129, 274, 379, 653
BstNI CCWGG 2 cut(s) 117, 355
BstSCI CCNGG 4 cut(s) 115, 178, 353, 657
BstSFI CTRYAG 1 cut(s) 307
BstX2I RGATCY 2 cut(s) 379, 653
BstYI RGATCY 2 cut(s) 379, 653
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 3 cut(s) 178, 221, 553
BtsCI GGATG 2 cut(s) 520, 554
BtsIMutI CAGTG 2 cut(s) 64, 602
BveI ACCTGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 391
Csp6I GTAC 1 cut(s) 207
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 1 cut(s) 717
DpnI GATC 4 cut(s) 131, 276, 381, 655
DpnII GATC 4 cut(s) 129, 274, 379, 653
DraIII CACNNNGTG 1 cut(s) 618
EaeI YGGCCR 3 cut(s) 176, 219, 551
Eam1104I CTCTTC 2 cut(s) 58, 282
EarI CTCTTC 2 cut(s) 58, 282
Eco130I CCWWGG 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 71
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 712
EcoRII CCWGG 2 cut(s) 115, 353
EcoRV GATATC 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 510
EcoT22I ATGCAT 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 510
Esp3I CGTCTC 1 cut(s) 568
FaqI GGGAC 2 cut(s) 196, 404
FauNDI CATATG 1 cut(s) 187
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 1 cut(s) 529
FokI GGATG 2 cut(s) 527, 541
FspBI CTAG 1 cut(s) 678
GsaI CCCAGC 1 cut(s) 85
HaeIII GGCC 3 cut(s) 178, 221, 553
HapII CCGG 2 cut(s) 179, 659
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 4 cut(s) 50, 494, 599, 626
HpaII CCGG 2 cut(s) 179, 659
HphI GGTGA 2 cut(s) 74, 371
Hpy166II GTNNAC 2 cut(s) 530, 545
Hpy188I TCNGA 2 cut(s) 265, 564
Hpy188III TCNNGA 5 cut(s) 137, 248, 278, 383, 635
Hpy8I GTNNAC 2 cut(s) 530, 545
Hpy99I CGWCG 2 cut(s) 47, 50
HpyCH4III ACNGT 2 cut(s) 432, 606
HpyCH4V TGCA 5 cut(s) 191, 197, 309, 326, 669
HpyF3I CTNAG 1 cut(s) 717
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 4 cut(s) 129, 274, 379, 653
LweI GCATC 3 cut(s) 115, 655, 678
MaeI CTAG 1 cut(s) 678
MaeIII GTNAC 1 cut(s) 359
MalI GATC 4 cut(s) 131, 276, 381, 655
MboI GATC 4 cut(s) 129, 274, 379, 653
MboII GAAGA 6 cut(s) 18, 45, 246, 299, 591, 601
MflI RGATCY 2 cut(s) 379, 653
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 8 cut(s) 140, 166, 282, 321, 396, 439, 582, 712
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 551
MnlI CCTC 8 cut(s) 58, 93, 348, 476, 513, 558, 586, 616
Mox20I TGGCCA 1 cut(s) 221
Mph1103I ATGCAT 1 cut(s) 193
MscI TGGCCA 1 cut(s) 221
Msp20I TGGCCA 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 2 cut(s) 179, 659
MspR9I CCNGG 4 cut(s) 117, 180, 355, 659
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 2 cut(s) 117, 355
NciI CCSGG 2 cut(s) 180, 659
NdeI CATATG 1 cut(s) 187
NdeII GATC 4 cut(s) 129, 274, 379, 653
NlaIV GGNNCC 3 cut(s) 381, 392, 655
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 359
NsiI ATGCAT 1 cut(s) 193
PaqCI CACCTGC 1 cut(s) 337
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 3 cut(s) 494, 599, 626
PfoI TCCNGGA 1 cut(s) 115
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 391
PsiI TTATAA 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 391
Psp6I CCWGG 2 cut(s) 115, 353
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 2 cut(s) 115, 353
PspN4I GGNNCC 3 cut(s) 381, 392, 655
PspPI GGNCC 1 cut(s) 391
PspPPI RGGWCCY 1 cut(s) 391
PstI CTGCAG 1 cut(s) 311
PsuI RGATCY 2 cut(s) 379, 653
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
Sau3AI GATC 4 cut(s) 129, 274, 379, 653
Sau96I GGNCC 1 cut(s) 391
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 4 cut(s) 117, 180, 355, 659
SfaNI GCATC 3 cut(s) 115, 655, 678
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 1 cut(s) 391
Sse9I AATT 8 cut(s) 140, 166, 282, 321, 396, 439, 582, 712
SspMI CTAG 1 cut(s) 678
StyD4I CCNGG 4 cut(s) 115, 178, 353, 657
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 2 cut(s) 432, 606
TaqI TCGA 2 cut(s) 136, 505
TasI AATT 8 cut(s) 140, 166, 282, 321, 396, 439, 582, 712
TfiI GAWTC 3 cut(s) 494, 599, 626
TscAI CASTG 2 cut(s) 64, 609
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 135, 507
TspRI CASTG 2 cut(s) 64, 609
VpaK11BI GGWCC 1 cut(s) 391
XapI RAATTY 3 cut(s) 140, 439, 712
XmiI GTMKAC 1 cut(s) 529
XspI CTAG 1 cut(s) 678
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.