Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008079.1

Orthogroup ID

OG0005150

Physical Location & Seq

Genomic Coordinates Forward (+)

13570 .. 15894

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008079.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggacgtagctctcttttccccatcttccctttttgccaacgacgacgactcttccggtggtgaggaaaacacagagacccagcaaagcttcgtagagatgaagcatcagtttcctggaatggagttgattattcgagaattttcatttcatcagctgaatgccaatttactctggccggggacatttgcatttgcagaatggttagttcaaaacaggccattgattgagggacggcattgtattgaactgggcagtggtactggtgctttggccattttcctacaaagattgtgtaatcttgacatcactacatcagactataatgatcaagaaattgaagagaatatagcttacaactgcagggtacctggggtgacagcttaccccaatagggatccagactgggacctaattattgcgagtgatatcttattgtatgtgaaacagtatccaaatttgataaaaactctttcgtttctcctcacatcttacaagccaaaggagaatgaatcacagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

174

Amino Acids

19.77

Weight (kDa)

4.39

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470
fragaria_vesca	FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480
malus_domestica	MD04G1152000.v1.1
prunus_persica	Prupe.6G277100_v2.0.a1
pyrus_communis	pycom04g13800
rosa_chinensis	RchiOBHm_Chr3g0463171
rosa_laevigata	RLG00000024806
rosa_multiflora	Rmu_sc0001916.1_g000012 Rmu_sc0008079.1_g000006 Rmu_sc0008124.1_g000004
rosa_roxburghii	Rroxscaffold_6G00416860 Rroxscaffold_6G00416910
rosa_rugosa	Rorug03G0061900 Rorug03G0062000
rosa_samantha	Rh3BG124600 Rh3CG126600 Rh3DG125600
rosa_wichuraiana	Rw3G010170 Rw3G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	367
AclWI	GGATC	2 cut(s)	392, 405
AcoI	YGGCCR	2 cut(s)	176, 273
AcsI	RAATTY	2 cut(s)	140, 457
AfaI	GTAC	2 cut(s)	262, 369
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	212, 248, 341
AjnI	CCWGG	2 cut(s)	115, 370
AluBI	AGCT	5 cut(s)	11, 90, 157, 353, 383
AluI	AGCT	5 cut(s)	11, 90, 157, 353, 383
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	392, 405
AoxI	GGCC	3 cut(s)	176, 218, 273
ApoI	RAATTY	2 cut(s)	140, 457
Asp718I	GGTACC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	74, 388
AvaII	GGWCC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	367
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	2 cut(s)	117, 372
BciVI	GTATCC	1 cut(s)	462
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	361
BfuI	GTATCC	1 cut(s)	462
Bme1390I	CCNGG	3 cut(s)	117, 180, 372
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	3 cut(s)	369, 399, 410
BmrFI	CCNGG	3 cut(s)	117, 180, 372
BmrI	ACTGGG	2 cut(s)	260, 415
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	2 cut(s)	260, 415
BpuMI	CCSGG	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	179, 371
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	3 cut(s)	255, 268, 410
BseBI	CCWGG	2 cut(s)	117, 372
BseDI	CCNNGG	2 cut(s)	179, 371
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseNI	ACTGG	3 cut(s)	255, 268, 410
BseRI	GAGGAG	1 cut(s)	473
BseYI	CCCAGC	1 cut(s)	81
BshFI	GGCC	3 cut(s)	178, 220, 275
BshNI	GGYRCC	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	57, 179
BslFI	GGGAC	3 cut(s)	196, 246, 422
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	3 cut(s)	196, 246, 422
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	178, 220, 275
Bso31I	GGTCTC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	328, 397
BspANI	GGCC	3 cut(s)	178, 220, 275
BspLI	GGNNCC	3 cut(s)	369, 399, 410
BspMAI	CTGCAG	1 cut(s)	365
BspPI	GGATC	2 cut(s)	392, 405
BspT107I	GGYRCC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	71
BsrI	ACTGG	3 cut(s)	255, 268, 410
BssECI	CCNNGG	2 cut(s)	179, 371
BssMI	GATC	2 cut(s)	328, 397
Bst2UI	CCWGG	2 cut(s)	117, 372
Bst4CI	ACNGT	1 cut(s)	450
Bst6I	CTCTTC	2 cut(s)	58, 336
BstKTI	GATC	2 cut(s)	331, 400
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	328, 397
BstNI	CCWGG	2 cut(s)	117, 372
BstSCI	CCNGG	3 cut(s)	115, 178, 370
BstSFI	CTRYAG	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	178, 220, 275
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	409
Csp6I	GTAC	2 cut(s)	261, 368
CviQI	GTAC	2 cut(s)	261, 368
DpnI	GATC	2 cut(s)	330, 399
DpnII	GATC	2 cut(s)	328, 397
EaeI	YGGCCR	2 cut(s)	176, 273
Eam1104I	CTCTTC	2 cut(s)	58, 336
EarI	CTCTTC	2 cut(s)	58, 336
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRII	CCWGG	2 cut(s)	115, 370
EcoRV	GATATC	1 cut(s)	430
FaiI	YATR	3 cut(s)	324, 350, 441
FaqI	GGGAC	3 cut(s)	196, 246, 422
FbaI	TGATCA	1 cut(s)	328
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	178, 220, 275
HapII	CCGG	2 cut(s)	57, 179
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	2 cut(s)	50, 512
HpaII	CCGG	2 cut(s)	57, 179
HphI	GGTGA	2 cut(s)	74, 388
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	4 cut(s)	137, 302, 332, 401
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	3 cut(s)	191, 197, 363
HpySE526I	ACGT	1 cut(s)	6
KpnI	GGTACC	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	328, 397
LweI	GCATC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	330, 399
MboI	GATC	2 cut(s)	328, 397
MboII	GAAGA	3 cut(s)	18, 45, 353
MflI	RGATCY	1 cut(s)	397
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	5 cut(s)	140, 166, 336, 414, 457
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	58, 223, 494
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	2 cut(s)	57, 179
MspR9I	CCNGG	3 cut(s)	117, 180, 372
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	117, 372
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	328, 397
NlaIV	GGNNCC	3 cut(s)	369, 399, 410
NmuCI	GTSAC	1 cut(s)	376
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	512
PfoI	TCCNGGA	1 cut(s)	115
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	409
Psp6I	CCWGG	2 cut(s)	115, 370
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	115, 370
PspN4I	GGNNCC	3 cut(s)	369, 399, 410
PspPI	GGNCC	1 cut(s)	409
PspPPI	RGGWCCY	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	157
RsaI	GTAC	2 cut(s)	262, 369
RsaNI	GTAC	2 cut(s)	261, 368
Sau3AI	GATC	2 cut(s)	328, 397
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	3 cut(s)	117, 180, 372
SetI	ASST	8 cut(s)	9, 13, 92, 159, 355, 373, 385, 414
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	409
Sse9I	AATT	5 cut(s)	140, 166, 336, 414, 457
StyD4I	CCNGG	3 cut(s)	115, 178, 370
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	136
TasI	AATT	5 cut(s)	140, 166, 336, 414, 457
TfiI	GAWTC	1 cut(s)	512
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	116, 135, 140, 525
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	2 cut(s)	140, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.