Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005150

Physical Location & Seq

Genomic Coordinates Reverse (-)

38765310 .. 38768042

Gene Structure 2733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGACATAGCTCTCTTTTCCCCATCTTCCCTTTTTGCCAACGACGACGACTCTTCCAGTGGTGAGGAAAACACAGAGACCCAGCAAAGCTTCGTAGAGAGGAAGCATCAGTTTCCTGGAATGGAGTTGATTATTCGGGAATTTTCATTTCATCAGCTGAATGCCAATTTACTCTGGCCGGGGACATTTGCATTTGCAGAATGGTTAGTTCAAAACAGGCCATTGATTGAGGGACGGCATTGTATTGAACTGGGCAGTGGTACTGGTGCTTTGGCCATTTTCCTAAGAAGATTGTGTAATCTTGACATCACTACATCAGACTATAATGATCAAGAAATTGAAGAGAATATAGCTTACAACTGCAGGGTAAATGGCATTGCATCTGCTCTCCCTCATATAAAGTATACCTGGGGTGACATCTTCCCCAGTAGGGATCCAGACTGGGACCTAATTATTGCAAGTGATATCTTATTGTATGTGAAACAGTATCCAAATTTGATAAAAACTCTTTTGTTTCTCCTCAAATCTTACAAGCCGAAGGAGAATGATTTACAGCCTCGACCCATAGATGAGCCAACTGGACAATCTTTCAGTTTACCCCGGCCATCATTTCTCATGAGTTGGAGACGAAGAATTGGAAAAGAGGATGAATCACTGTTCTTCACGGGGTGTGAGGATGCTGGTCTTGAAGTAAAGCATCTGGGATCCCGGGTGTATTGCATCAAACCAAGAGAAACTACTGCAAATGGCGACCAAATAGTGAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

256

Amino Acids

29.21

Weight (kDa)

4.96

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_16	PF10294	42 - 175	1.4e-13	Lysine methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470
fragaria_vesca	FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480
malus_domestica	MD04G1152000.v1.1
prunus_persica	Prupe.6G277100_v2.0.a1
pyrus_communis	pycom04g13800
rosa_chinensis	RchiOBHm_Chr3g0463171
rosa_laevigata	RLG00000024806
rosa_multiflora	Rmu_sc0001916.1_g000012 Rmu_sc0008079.1_g000006 Rmu_sc0008124.1_g000004
rosa_roxburghii	Rroxscaffold_6G00416860 Rroxscaffold_6G00416910
rosa_rugosa	Rorug03G0061900 Rorug03G0062000
rosa_samantha	Rh3BG124600 Rh3CG126600 Rh3DG125600
rosa_wichuraiana	Rw3G010170 Rw3G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	404
AclWI	GGATC	4 cut(s)	428, 441, 699, 712
AcoI	YGGCCR	3 cut(s)	176, 273, 602
AcsI	RAATTY	3 cut(s)	140, 493, 763
AdeI	CACNNNGTG	1 cut(s)	669
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	4 cut(s)	212, 248, 341, 689
AjnI	CCWGG	2 cut(s)	115, 407
AluBI	AGCT	4 cut(s)	11, 90, 157, 353
AluI	AGCT	4 cut(s)	11, 90, 157, 353
Alw26I	GTCTC	2 cut(s)	71, 619
AlwI	GGATC	4 cut(s)	428, 441, 699, 712
Ama87I	CYCGRG	1 cut(s)	708
AoxI	GGCC	4 cut(s)	176, 218, 273, 602
ApoI	RAATTY	3 cut(s)	140, 493, 763
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	4 cut(s)	180, 601, 709, 710
AsuHPI	GGTGA	2 cut(s)	74, 425
AvaI	CYCGRG	1 cut(s)	708
AvaII	GGWCC	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	275
BamHI	GGATCC	2 cut(s)	433, 704
BccI	CCATC	2 cut(s)	31, 613
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	2 cut(s)	117, 409
BciVI	GTATCC	1 cut(s)	498
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	4 cut(s)	180, 601, 709, 710
BcoDI	GTCTC	2 cut(s)	71, 619
BfmI	CTRYAG	1 cut(s)	361
BfuI	GTATCC	1 cut(s)	498
Bme1390I	CCNGG	6 cut(s)	117, 180, 409, 601, 709, 710
Bme18I	GGWCC	1 cut(s)	445
BmeT110I	CYCGRG	1 cut(s)	708
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	3 cut(s)	435, 446, 706
BmrFI	CCNGG	6 cut(s)	117, 180, 409, 601, 709, 710
BmrI	ACTGGG	3 cut(s)	260, 420, 451
BmsI	GCATC	5 cut(s)	115, 389, 667, 706, 729
BmuI	ACTGGG	3 cut(s)	260, 420, 451
BpuMI	CCSGG	4 cut(s)	180, 601, 709, 710
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	179, 408, 599, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	6 cut(s)	57, 255, 268, 426, 446, 583
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	117, 409
BseDI	CCNNGG	4 cut(s)	179, 408, 599, 708
BseGI	GGATG	2 cut(s)	652, 682
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	1 cut(s)	375
BseNI	ACTGG	6 cut(s)	57, 255, 268, 426, 446, 583
BseRI	GAGGAG	1 cut(s)	509
BseYI	CCCAGC	1 cut(s)	81
BshFI	GGCC	4 cut(s)	178, 220, 275, 604
BsiHKCI	CYCGRG	1 cut(s)	708
BsiSI	CCGG	3 cut(s)	179, 601, 709
BslFI	GGGAC	3 cut(s)	196, 246, 458
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	2 cut(s)	71, 619
BsmBI	CGTCTC	1 cut(s)	619
BsmFI	GGGAC	3 cut(s)	196, 246, 458
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	4 cut(s)	178, 220, 275, 604
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	708
Bsp143I	GATC	3 cut(s)	328, 433, 704
BspANI	GGCC	4 cut(s)	178, 220, 275, 604
BspHI	TCATGA	1 cut(s)	615
BspLI	GGNNCC	3 cut(s)	435, 446, 706
BspMAI	CTGCAG	1 cut(s)	365
BspPI	GGATC	4 cut(s)	428, 441, 699, 712
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	6 cut(s)	57, 255, 268, 426, 446, 583
BssECI	CCNNGG	4 cut(s)	179, 408, 599, 708
BssMI	GATC	3 cut(s)	328, 433, 704
BssNAI	GTATAC	1 cut(s)	405
Bst1107I	GTATAC	1 cut(s)	405
Bst2UI	CCWGG	2 cut(s)	117, 409
Bst4CI	ACNGT	2 cut(s)	486, 657
Bst6I	CTCTTC	2 cut(s)	58, 336
BstDEI	CTNAG	2 cut(s)	284, 768
BstF5I	GGATG	2 cut(s)	652, 682
BstKTI	GATC	3 cut(s)	331, 436, 707
BstMAI	GTCTC	2 cut(s)	71, 619
BstMBI	GATC	3 cut(s)	328, 433, 704
BstNI	CCWGG	2 cut(s)	117, 409
BstSCI	CCNGG	6 cut(s)	115, 178, 407, 599, 707, 708
BstSFI	CTRYAG	1 cut(s)	361
BstX2I	RGATCY	2 cut(s)	433, 704
BstYI	RGATCY	2 cut(s)	433, 704
BstZ17I	GTATAC	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	4 cut(s)	178, 220, 275, 604
BtsCI	GGATG	2 cut(s)	652, 682
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	3 cut(s)	64, 262, 653
CciI	TCATGA	1 cut(s)	615
Cfr13I	GGNCC	1 cut(s)	445
Cfr9I	CCCGGG	1 cut(s)	708
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	1 cut(s)	616
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	2 cut(s)	284, 768
DpnI	GATC	3 cut(s)	330, 435, 706
DpnII	GATC	3 cut(s)	328, 433, 704
DraIII	CACNNNGTG	1 cut(s)	669
EaeI	YGGCCR	3 cut(s)	176, 273, 602
Eam1104I	CTCTTC	2 cut(s)	58, 336
EarI	CTCTTC	2 cut(s)	58, 336
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	445
Eco88I	CYCGRG	1 cut(s)	708
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	763
EcoRII	CCWGG	2 cut(s)	115, 407
EcoRV	GATATC	1 cut(s)	466
Esp3I	CGTCTC	1 cut(s)	619
FaeI	CATG	1 cut(s)	619
FaiI	YATR	9 cut(s)	8, 324, 350, 396, 398, 405, 477, 566, 617
FaqI	GGGAC	3 cut(s)	196, 246, 458
FatI	CATG	1 cut(s)	615
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	404
FokI	GGATG	2 cut(s)	659, 689
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	4 cut(s)	178, 220, 275, 604
HapII	CCGG	3 cut(s)	179, 601, 709
Hin1II	CATG	1 cut(s)	619
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	2 cut(s)	50, 650
HpaII	CCGG	3 cut(s)	179, 601, 709
HphI	GGTGA	2 cut(s)	74, 425
Hpy166II	GTNNAC	2 cut(s)	405, 596
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	6 cut(s)	137, 302, 332, 437, 616, 686
Hpy8I	GTNNAC	2 cut(s)	405, 596
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	2 cut(s)	486, 657
HpyCH4V	TGCA	7 cut(s)	191, 197, 363, 380, 458, 720, 743
HpyF3I	CTNAG	2 cut(s)	284, 768
Hsp92II	CATG	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	328, 433, 704
LweI	GCATC	5 cut(s)	115, 389, 667, 706, 729
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	3 cut(s)	330, 435, 706
MboI	GATC	3 cut(s)	328, 433, 704
MboII	GAAGA	7 cut(s)	18, 45, 300, 353, 412, 642, 652
MflI	RGATCY	2 cut(s)	433, 704
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	7 cut(s)	140, 166, 336, 450, 493, 633, 763
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	8 cut(s)	58, 93, 223, 402, 530, 567, 637, 667
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	3 cut(s)	179, 601, 709
MspR9I	CCNGG	6 cut(s)	117, 180, 409, 601, 709, 710
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	117, 409
NciI	CCSGG	4 cut(s)	180, 601, 709, 710
NdeII	GATC	3 cut(s)	328, 433, 704
NlaIII	CATG	1 cut(s)	619
NlaIV	GGNNCC	3 cut(s)	435, 446, 706
NmuCI	GTSAC	1 cut(s)	413
PagI	TCATGA	1 cut(s)	615
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	650
PfoI	TCCNGGA	1 cut(s)	115
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	445
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	115, 407
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	115, 407
PspN4I	GGNNCC	3 cut(s)	435, 446, 706
PspPI	GGNCC	1 cut(s)	445
PspPPI	RGGWCCY	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	365
PsuI	RGATCY	2 cut(s)	433, 704
PvuII	CAGCTG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
Sau3AI	GATC	3 cut(s)	328, 433, 704
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	6 cut(s)	117, 180, 409, 601, 709, 710
SetI	ASST	6 cut(s)	13, 92, 159, 355, 410, 450
SfaNI	GCATC	5 cut(s)	115, 389, 667, 706, 729
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	445
SmaI	CCCGGG	1 cut(s)	710
Sse9I	AATT	7 cut(s)	140, 166, 336, 450, 493, 633, 763
StyD4I	CCNGG	6 cut(s)	115, 178, 407, 599, 707, 708
TaaI	ACNGT	2 cut(s)	486, 657
TaqI	TCGA	1 cut(s)	559
TasI	AATT	7 cut(s)	140, 166, 336, 450, 493, 633, 763
TfiI	GAWTC	1 cut(s)	650
TscAI	CASTG	3 cut(s)	64, 262, 660
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	3 cut(s)	135, 140, 663
TspMI	CCCGGG	1 cut(s)	708
TspRI	CASTG	3 cut(s)	64, 262, 660
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	3 cut(s)	140, 493, 763
XmaI	CCCGGG	1 cut(s)	708
XmiI	GTMKAC	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.