Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005150

Physical Location & Seq

Genomic Coordinates Reverse (-)

26051667 .. 26053816

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G277100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGACATAGCTCTCTTTTCCCCATCTTCACTTTTCCATGACGACGAGGATGACACTTCCAGTGGTGAGGAAGACACAGAGAGCCAGCAAAGCTACGTCGAGAGGAGGCACAAGTTTCCGGGGATGGAGTTGGTCATCCGAGAATTTTCGTTTCATCAGCTGAATGCCAATTTACTCTGGCCTGGGACATTTGCAATTGCAGAATGGTTAGTTGAACACAGGCCATCAATTGAAGGACGGCATTGTCTTGAACTGGGCAGTGGCACTGGTGCTTTGGCCATTTTTCTACGAAGATTGCTTAATCTTGACATCACTACCTCAGACTATAATGATCAGGAAATTGAAGAAAATATAGCTCATAACTGCAGGGTAAATGGAATTACACCTGTCCTTCCTCATATAAAGCATACCTGGGGTGACACTTTCCCTACTGCTGATCCAGACTGGGACCTGATTATTGCTAGTGATATTTTGTTGTATGTGAAGCAGTATGCAAATTTGATAAAAACCCTTTTGTTTCTCCTCAAATCTTACAAGCCGAAGGATAATAATGCCCGGCCTCAAGCAAAGGACGAGCAGAGTGGCGGACAATCGTTCAGTTTGCCCCGGCCTGCATTTCTAATGAGTTGGAGACGCAGAATTGGAAAAGAGGATGAATCACTCTTCTTCTCTGGTTGCGAAGATGCTGGTCTTGAAGTAAAGCATCTGGGATCTCGTGTATATTGCATCAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

246

Amino Acids

27.91

Weight (kDa)

5.18

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470
fragaria_vesca	FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480
malus_domestica	MD04G1152000.v1.1
prunus_persica	Prupe.6G277100_v2.0.a1
pyrus_communis	pycom04g13800
rosa_chinensis	RchiOBHm_Chr3g0463171
rosa_laevigata	RLG00000024806
rosa_multiflora	Rmu_sc0001916.1_g000012 Rmu_sc0008079.1_g000006 Rmu_sc0008124.1_g000004
rosa_roxburghii	Rroxscaffold_6G00416860 Rroxscaffold_6G00416910
rosa_rugosa	Rorug03G0061900 Rorug03G0062000
rosa_samantha	Rh3BG124600 Rh3CG126600 Rh3DG125600
rosa_wichuraiana	Rw3G010170 Rw3G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	243
AciI	CCGC	1 cut(s)	585
AclWI	GGATC	2 cut(s)	431, 718
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	143, 496
AgsI	TTSAA	5 cut(s)	215, 233, 251, 344, 695
AjnI	CCWGG	2 cut(s)	181, 410
AluBI	AGCT	4 cut(s)	11, 93, 160, 356
AluI	AGCT	4 cut(s)	11, 93, 160, 356
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	2 cut(s)	431, 718
AoxI	GGCC	5 cut(s)	179, 221, 276, 557, 608
ApoI	RAATTY	2 cut(s)	143, 496
AspS9I	GGNCC	1 cut(s)	448
AsuC2I	CCSGG	3 cut(s)	120, 556, 607
AsuHPI	GGTGA	2 cut(s)	77, 428
AvaII	GGWCC	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	278
BauI	CACGAG	1 cut(s)	714
BbsI	GAAGAC	1 cut(s)	78
BccI	CCATC	3 cut(s)	31, 118, 232
BceAI	ACGGC	1 cut(s)	254
BciT130I	CCWGG	2 cut(s)	183, 412
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	3 cut(s)	120, 556, 607
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	364
Bme1390I	CCNGG	5 cut(s)	120, 183, 412, 556, 607
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	5 cut(s)	120, 183, 412, 556, 607
BmrI	ACTGGG	2 cut(s)	263, 454
BmsI	GCATC	2 cut(s)	673, 712
BmuI	ACTGGG	2 cut(s)	263, 454
BpiI	GAAGAC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	546
BpuMI	CCSGG	3 cut(s)	120, 556, 607
BsaJI	CCNNGG	4 cut(s)	119, 182, 411, 605
Bse1I	ACTGG	4 cut(s)	60, 258, 271, 449
BseBI	CCWGG	2 cut(s)	183, 412
BseDI	CCNNGG	4 cut(s)	119, 182, 411, 605
BseGI	GGATG	4 cut(s)	55, 129, 135, 658
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	4 cut(s)	60, 258, 271, 449
BseRI	GAGGAG	2 cut(s)	118, 512
BshFI	GGCC	5 cut(s)	181, 223, 278, 559, 610
BsiSI	CCGG	3 cut(s)	119, 556, 607
BslFI	GGGAC	2 cut(s)	199, 461
BsmAI	GTCTC	1 cut(s)	625
BsmBI	CGTCTC	1 cut(s)	625
BsmFI	GGGAC	2 cut(s)	199, 461
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	5 cut(s)	181, 223, 278, 559, 610
Bsp143I	GATC	3 cut(s)	331, 436, 710
BspACI	CCGC	1 cut(s)	585
BspANI	GGCC	5 cut(s)	181, 223, 278, 559, 610
BspCNI	CTCAG	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	449
BspMAI	CTGCAG	1 cut(s)	368
BspPI	GGATC	2 cut(s)	431, 718
BsrI	ACTGG	4 cut(s)	60, 258, 271, 449
BssECI	CCNNGG	4 cut(s)	119, 182, 411, 605
BssMI	GATC	3 cut(s)	331, 436, 710
BssSI	CACGAG	1 cut(s)	714
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	183, 412
Bst6I	CTCTTC	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	86, 612
BstDEI	CTNAG	1 cut(s)	319
BstF5I	GGATG	4 cut(s)	55, 129, 135, 658
BstKTI	GATC	3 cut(s)	334, 439, 713
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	3 cut(s)	331, 436, 710
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNI	CCWGG	2 cut(s)	183, 412
BstSCI	CCNGG	5 cut(s)	118, 181, 410, 554, 605
BstSFI	CTRYAG	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	710
BsuRI	GGCC	5 cut(s)	181, 223, 278, 559, 610
BtsCI	GGATG	4 cut(s)	55, 129, 135, 658
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	3 cut(s)	67, 264, 265
Cac8I	GCNNGC	2 cut(s)	86, 612
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	1 cut(s)	642
CviAII	CATG	2 cut(s)	38, 735
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	3 cut(s)	333, 438, 712
DpnII	GATC	3 cut(s)	331, 436, 710
DrdI	GACNNNNNNGTC	1 cut(s)	243
DseDI	GACNNNNNNGTC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
EciI	GGCGGA	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	181, 410
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	2 cut(s)	41, 738
FaqI	GGGAC	2 cut(s)	199, 461
FatI	CATG	2 cut(s)	37, 734
FbaI	TGATCA	1 cut(s)	331
FokI	GGATG	4 cut(s)	62, 122, 136, 665
FspBI	CTAG	1 cut(s)	462
HaeIII	GGCC	5 cut(s)	181, 223, 278, 559, 610
HapII	CCGG	3 cut(s)	119, 556, 607
HgaI	GACGC	1 cut(s)	642
Hin1II	CATG	2 cut(s)	41, 738
HinfI	GANTC	1 cut(s)	656
HpaII	CCGG	3 cut(s)	119, 556, 607
HphI	GGTGA	2 cut(s)	77, 428
Hpy188I	TCNGA	2 cut(s)	140, 322
Hpy188III	TCNNGA	6 cut(s)	100, 248, 305, 335, 440, 692
Hpy99I	CGWCG	2 cut(s)	47, 101
HpyAV	CCTTC	3 cut(s)	227, 401, 535
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	6 cut(s)	194, 200, 366, 494, 614, 726
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	1 cut(s)	319
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	41, 738
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	331, 436, 710
LweI	GCATC	2 cut(s)	673, 712
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	3 cut(s)	333, 438, 712
MboI	GATC	3 cut(s)	331, 436, 710
MboII	GAAGA	7 cut(s)	18, 83, 303, 356, 655, 658, 692
MfeI	CAATTG	2 cut(s)	195, 228
MflI	RGATCY	1 cut(s)	710
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	8 cut(s)	143, 169, 195, 228, 339, 378, 496, 639
MluNI	TGGCCA	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	608
MnlI	CCTC	9 cut(s)	40, 61, 96, 99, 328, 405, 533, 570, 643
Mox20I	TGGCCA	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	3 cut(s)	119, 556, 607
MspR9I	CCNGG	5 cut(s)	120, 183, 412, 556, 607
MunI	CAATTG	2 cut(s)	195, 228
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	2 cut(s)	183, 412
MwoI	GCNNNNNNNGC	1 cut(s)	90
NciI	CCSGG	3 cut(s)	120, 556, 607
NdeII	GATC	3 cut(s)	331, 436, 710
NlaIII	CATG	2 cut(s)	41, 738
NlaIV	GGNNCC	1 cut(s)	449
NmuCI	GTSAC	1 cut(s)	416
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	656
PpuMI	RGGWCCY	1 cut(s)	448
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	2 cut(s)	181, 410
PspGI	CCWGG	2 cut(s)	181, 410
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
PstI	CTGCAG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	710
PvuII	CAGCTG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	3 cut(s)	331, 436, 710
Sau96I	GGNCC	1 cut(s)	448
ScrFI	CCNGG	5 cut(s)	120, 183, 412, 556, 607
SetI	ASST	9 cut(s)	13, 95, 99, 162, 320, 358, 388, 413, 453
SfaNI	GCATC	2 cut(s)	673, 712
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
Sse9I	AATT	8 cut(s)	143, 169, 195, 228, 339, 378, 496, 639
SsiI	CCGC	1 cut(s)	585
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	5 cut(s)	118, 181, 410, 554, 605
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	99
TasI	AATT	8 cut(s)	143, 169, 195, 228, 339, 378, 496, 639
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	3 cut(s)	67, 265, 271
TseFI	GTSAC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	143, 669
TspRI	CASTG	3 cut(s)	67, 265, 271
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	2 cut(s)	143, 496
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.