Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001916.1

Orthogroup ID

OG0005150

Physical Location & Seq

Genomic Coordinates Forward (+)

37024 .. 39648

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001916.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggacgtagccctcttttccccatcttccctttttgccaacgacgacgactcttccggtggtgaggaaaacacagagacccagcaaagcttcgtagagatgaagcatcagtttcctggaatggagttgattattcgagaattttcatttcatcagctgaatgccaatttactctggccggggacatttgcatttgcagaatggttagttcaaaacaggccattgattgagggacggcattgtattgaactgggcagtggtactggtgctttgtccattttcctacaaagattgtgtaatcttgacatcactacatcagactataatgatcaagaaattgaagtgaatatagcttacaactgcagggtacctggggtgacagcttaccccaatagggatccagactgggacctaattattgcgagtgatatcttattgtatgtgaaacagtatccaaatttgataaaaactctttcgtttctcctcacatcttacaagccaaaggagaatgaatcacagcctcgacccaaggacgagccaactggacaatctttcagtttacctcggccgtcatttctcatgagttggagacgaagaattggaaaagaggacgaatcactgttcttcacagggtgtgaggattctggtcttgaagtaaagcatctgggatcccgggtgtattgcatcaaacctagagaaactattacaaacggcgaccaaatagtgaattcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

244

Amino Acids

27.74

Weight (kDa)

4.8

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470
fragaria_vesca	FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480
malus_domestica	MD04G1152000.v1.1
prunus_persica	Prupe.6G277100_v2.0.a1
pyrus_communis	pycom04g13800
rosa_chinensis	RchiOBHm_Chr3g0463171
rosa_laevigata	RLG00000024806
rosa_multiflora	Rmu_sc0001916.1_g000012 Rmu_sc0008079.1_g000006 Rmu_sc0008124.1_g000004
rosa_roxburghii	Rroxscaffold_6G00416860 Rroxscaffold_6G00416910
rosa_rugosa	Rorug03G0061900 Rorug03G0062000
rosa_samantha	Rh3BG124600 Rh3CG126600 Rh3DG125600
rosa_wichuraiana	Rw3G010170 Rw3G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	367
AclWI	GGATC	4 cut(s)	392, 405, 663, 676
AcoI	YGGCCR	2 cut(s)	176, 566
AcsI	RAATTY	3 cut(s)	140, 457, 727
AdeI	CACNNNGTG	1 cut(s)	633
AfaI	GTAC	2 cut(s)	262, 369
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	4 cut(s)	212, 248, 341, 653
AjnI	CCWGG	2 cut(s)	115, 370
AluBI	AGCT	4 cut(s)	90, 157, 353, 383
AluI	AGCT	4 cut(s)	90, 157, 353, 383
Alw26I	GTCTC	2 cut(s)	71, 583
AlwI	GGATC	4 cut(s)	392, 405, 663, 676
Ama87I	CYCGRG	1 cut(s)	672
AoxI	GGCC	3 cut(s)	176, 218, 566
ApoI	RAATTY	3 cut(s)	140, 457, 727
Asp718I	GGTACC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	3 cut(s)	180, 673, 674
AsuHPI	GGTGA	2 cut(s)	74, 388
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	1 cut(s)	409
BamHI	GGATCC	2 cut(s)	397, 668
BanI	GGYRCC	1 cut(s)	367
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	3 cut(s)	251, 553, 727
BciT130I	CCWGG	2 cut(s)	117, 372
BciVI	GTATCC	1 cut(s)	462
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	3 cut(s)	180, 673, 674
BcoDI	GTCTC	2 cut(s)	71, 583
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	1 cut(s)	361
BfuI	GTATCC	1 cut(s)	462
Bme1390I	CCNGG	5 cut(s)	117, 180, 372, 673, 674
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	4 cut(s)	369, 399, 410, 670
BmrFI	CCNGG	5 cut(s)	117, 180, 372, 673, 674
BmrI	ACTGGG	2 cut(s)	260, 415
BmsI	GCATC	3 cut(s)	115, 670, 693
BmuI	ACTGGG	2 cut(s)	260, 415
BpuMI	CCSGG	3 cut(s)	180, 673, 674
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	5 cut(s)	179, 371, 528, 563, 672
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	4 cut(s)	255, 268, 410, 547
BseBI	CCWGG	2 cut(s)	117, 372
BseDI	CCNNGG	5 cut(s)	179, 371, 528, 563, 672
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseNI	ACTGG	4 cut(s)	255, 268, 410, 547
BseRI	GAGGAG	1 cut(s)	473
BseX3I	CGGCCG	1 cut(s)	566
BseYI	CCCAGC	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	569
BshFI	GGCC	3 cut(s)	178, 220, 568
BshNI	GGYRCC	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	569
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	3 cut(s)	57, 179, 673
BslFI	GGGAC	3 cut(s)	196, 246, 422
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	2 cut(s)	71, 583
BsmBI	CGTCTC	1 cut(s)	583
BsmFI	GGGAC	3 cut(s)	196, 246, 422
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	178, 220, 568
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	672
Bsp143I	GATC	3 cut(s)	328, 397, 668
BspANI	GGCC	3 cut(s)	178, 220, 568
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	4 cut(s)	369, 399, 410, 670
BspMAI	CTGCAG	1 cut(s)	365
BspPI	GGATC	4 cut(s)	392, 405, 663, 676
BspT107I	GGYRCC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	71
BsrI	ACTGG	4 cut(s)	255, 268, 410, 547
BssECI	CCNNGG	5 cut(s)	179, 371, 528, 563, 672
BssMI	GATC	3 cut(s)	328, 397, 668
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	2 cut(s)	117, 372
Bst4CI	ACNGT	2 cut(s)	450, 621
Bst6I	CTCTTC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	732
BstKTI	GATC	3 cut(s)	331, 400, 671
BstMAI	GTCTC	2 cut(s)	71, 583
BstMBI	GATC	3 cut(s)	328, 397, 668
BstMCI	CGRYCG	1 cut(s)	569
BstNI	CCWGG	2 cut(s)	117, 372
BstSCI	CCNGG	5 cut(s)	115, 178, 370, 671, 672
BstSFI	CTRYAG	1 cut(s)	361
BstX2I	RGATCY	2 cut(s)	397, 668
BstYI	RGATCY	2 cut(s)	397, 668
BstZI	CGGCCG	1 cut(s)	566
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	178, 220, 568
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 617
CciI	TCATGA	1 cut(s)	579
Cfr13I	GGNCC	1 cut(s)	409
Cfr9I	CCCGGG	1 cut(s)	672
Csp6I	GTAC	2 cut(s)	261, 368
CviAII	CATG	1 cut(s)	580
CviQI	GTAC	2 cut(s)	261, 368
DdeI	CTNAG	1 cut(s)	732
DpnI	GATC	3 cut(s)	330, 399, 670
DpnII	GATC	3 cut(s)	328, 397, 668
DraIII	CACNNNGTG	1 cut(s)	633
EaeI	YGGCCR	2 cut(s)	176, 566
EagI	CGGCCG	1 cut(s)	566
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
EclXI	CGGCCG	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	528
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	409
Eco52I	CGGCCG	1 cut(s)	566
Eco88I	CYCGRG	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	727
EcoRII	CCWGG	2 cut(s)	115, 370
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	583
FaeI	CATG	1 cut(s)	583
FaiI	YATR	4 cut(s)	324, 350, 441, 581
FaqI	GGGAC	3 cut(s)	196, 246, 422
FatI	CATG	1 cut(s)	579
FbaI	TGATCA	1 cut(s)	328
FspBI	CTAG	1 cut(s)	693
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	178, 220, 568
HapII	CCGG	3 cut(s)	57, 179, 673
Hin1II	CATG	1 cut(s)	583
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	4 cut(s)	50, 512, 614, 641
HpaII	CCGG	3 cut(s)	57, 179, 673
HphI	GGTGA	2 cut(s)	74, 388
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	6 cut(s)	137, 302, 332, 401, 580, 650
Hpy8I	GTNNAC	1 cut(s)	560
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyCH4III	ACNGT	2 cut(s)	450, 621
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	4 cut(s)	191, 197, 363, 684
HpyF3I	CTNAG	1 cut(s)	732
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	583
KpnI	GGTACC	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	328, 397, 668
LweI	GCATC	3 cut(s)	115, 670, 693
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	330, 399, 670
MboI	GATC	3 cut(s)	328, 397, 668
MboII	GAAGA	4 cut(s)	18, 45, 606, 616
MflI	RGATCY	2 cut(s)	397, 668
MluCI	AATT	7 cut(s)	140, 166, 336, 414, 457, 597, 727
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	8 cut(s)	23, 58, 223, 494, 531, 573, 601, 631
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	3 cut(s)	57, 179, 673
MspR9I	CCNGG	5 cut(s)	117, 180, 372, 673, 674
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	117, 372
NciI	CCSGG	3 cut(s)	180, 673, 674
NdeII	GATC	3 cut(s)	328, 397, 668
NlaIII	CATG	1 cut(s)	583
NlaIV	GGNNCC	4 cut(s)	369, 399, 410, 670
NmeAIII	GCCGAG	1 cut(s)	544
NmuCI	GTSAC	1 cut(s)	376
PagI	TCATGA	1 cut(s)	579
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	512, 614, 641
PfoI	TCCNGGA	1 cut(s)	115
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	409
Psp6I	CCWGG	2 cut(s)	115, 370
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	115, 370
PspN4I	GGNNCC	4 cut(s)	369, 399, 410, 670
PspPI	GGNCC	1 cut(s)	409
PspPPI	RGGWCCY	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	365
PsuI	RGATCY	2 cut(s)	397, 668
PvuII	CAGCTG	1 cut(s)	157
RsaI	GTAC	2 cut(s)	262, 369
RsaNI	GTAC	2 cut(s)	261, 368
Sau3AI	GATC	3 cut(s)	328, 397, 668
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	5 cut(s)	117, 180, 372, 673, 674
SetI	ASST	9 cut(s)	9, 92, 159, 355, 373, 385, 414, 565, 694
SfaNI	GCATC	3 cut(s)	115, 670, 693
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	409
SmaI	CCCGGG	1 cut(s)	674
Sse9I	AATT	7 cut(s)	140, 166, 336, 414, 457, 597, 727
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	5 cut(s)	115, 178, 370, 671, 672
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	450, 621
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	136, 523
TasI	AATT	7 cut(s)	140, 166, 336, 414, 457, 597, 727
TfiI	GAWTC	3 cut(s)	512, 614, 641
TscAI	CASTG	2 cut(s)	262, 624
TseFI	GTSAC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	116, 135, 140, 525
TspMI	CCCGGG	1 cut(s)	672
TspRI	CASTG	2 cut(s)	262, 624
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	3 cut(s)	140, 457, 727
XmaI	CCCGGG	1 cut(s)	672
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.