Rh3DG125600

Protein-lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005150
Physical Location & Seq
Forward (+)
10597208 .. 10646076
48869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG125600.1

Sequence Viewer

Length: 771 bp
ATGGACATAGCTCTCTTTTCCCCATCTTCCCTTTTTGCCAACGACGATGACTCTTCCAGTGGCGAGGAAAACACAGAGACCCAGCAAAGCTTCGTAGAGAGGAAGCATGAGTTTCCTGGAATGGAATTGATCGTTCGAGAATTTTCATTTCATCAGCTGAATGCCAATTTACTCTGGCCGGGGACATTTGCATTTGCAGAATGGTTAGTTCAAAACAGGCCATTGATTGAGGGACGGCATTGTATTGAACTGGGCAGTGGTACTGGTGCTTTGGCCATTTTCCTACGAAGATTGTGTAATATTGACATCACTACATCAGACTATAATGATCAAGAAATTGAAGAGAATATAGCTTACAACTGCAGGGTAAATGGAATTGCACATGCTCTCCCTCATATAAAGCATACCTGGGGTGACAGCTTCCCCATTAGGGATCCAGACTGGGACCTAATTATTGCGAGTGATATCTTATTGTATGTGAAACAGTATCCAAATTTGATAAAAACTCTTTCGTTTCTCCTCACATCTTACAAGCCAAAGGAGAATGAATCACAGCCTCGACCCAAGGATGAGCCAACTGGACAATCTTTCAGTTTACCTCGGCCGTCATTTGTGATGAGTTGGAGACGAAGAATTGGAAAAGAGGACGAATCACTGTTCTTCACAGGGTGTGAGGATTCTTGTCTTGAAGTAAAGCATCTGGGATCCCGGGTGTATTGCATCAAACCTAGAGAAACTATTACAAACGGCGACCAAATAGTGAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

256

Amino Acids

29.26

Weight (kDa)

5.05

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 54 - 175 2.3e-13 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 428, 441, 699, 712
AcoI YGGCCR 3 cut(s) 176, 273, 602
AcsI RAATTY 3 cut(s) 140, 493, 763
AdeI CACNNNGTG 1 cut(s) 669
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 4 cut(s) 212, 248, 341, 689
AjnI CCWGG 2 cut(s) 115, 407
AluBI AGCT 5 cut(s) 11, 90, 157, 353, 420
AluI AGCT 5 cut(s) 11, 90, 157, 353, 420
Alw26I GTCTC 2 cut(s) 71, 619
AlwI GGATC 4 cut(s) 428, 441, 699, 712
Ama87I CYCGRG 1 cut(s) 708
AoxI GGCC 4 cut(s) 176, 218, 273, 602
ApoI RAATTY 3 cut(s) 140, 493, 763
AspS9I GGNCC 1 cut(s) 445
AsuC2I CCSGG 3 cut(s) 180, 709, 710
AsuHPI GGTGA 1 cut(s) 425
AvaI CYCGRG 1 cut(s) 708
AvaII GGWCC 1 cut(s) 445
BalI TGGCCA 1 cut(s) 275
BamHI GGATCC 2 cut(s) 433, 704
BccI CCATC 1 cut(s) 31
BceAI ACGGC 3 cut(s) 251, 589, 763
BciT130I CCWGG 2 cut(s) 117, 409
BciVI GTATCC 1 cut(s) 498
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 3 cut(s) 180, 709, 710
BcoDI GTCTC 2 cut(s) 71, 619
BfaI CTAG 1 cut(s) 729
BfmI CTRYAG 1 cut(s) 361
BfuI GTATCC 1 cut(s) 498
Bme1390I CCNGG 5 cut(s) 117, 180, 409, 709, 710
Bme18I GGWCC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 708
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 3 cut(s) 435, 446, 706
BmrFI CCNGG 5 cut(s) 117, 180, 409, 709, 710
BmrI ACTGGG 2 cut(s) 260, 451
BmsI GCATC 2 cut(s) 706, 729
BmuI ACTGGG 2 cut(s) 260, 451
BpuMI CCSGG 3 cut(s) 180, 709, 710
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 5 cut(s) 179, 408, 564, 599, 708
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 5 cut(s) 57, 255, 268, 446, 583
BseBI CCWGG 2 cut(s) 117, 409
BseDI CCNNGG 5 cut(s) 179, 408, 564, 599, 708
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 1 cut(s) 430
BseNI ACTGG 5 cut(s) 57, 255, 268, 446, 583
BseRI GAGGAG 1 cut(s) 509
BseX3I CGGCCG 1 cut(s) 602
BseYI CCCAGC 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 605
BshFI GGCC 4 cut(s) 178, 220, 275, 604
BsiEI CGRYCG 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 708
BsiSI CCGG 2 cut(s) 179, 709
BslFI GGGAC 3 cut(s) 196, 246, 458
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 2 cut(s) 71, 619
BsmBI CGTCTC 1 cut(s) 619
BsmFI GGGAC 3 cut(s) 196, 246, 458
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 4 cut(s) 178, 220, 275, 604
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 708
Bsp143I GATC 4 cut(s) 129, 328, 433, 704
BspANI GGCC 4 cut(s) 178, 220, 275, 604
BspLI GGNNCC 3 cut(s) 435, 446, 706
BspMAI CTGCAG 1 cut(s) 365
BspPI GGATC 4 cut(s) 428, 441, 699, 712
BspTNI GGTCTC 1 cut(s) 71
BsrI ACTGG 5 cut(s) 57, 255, 268, 446, 583
BssECI CCNNGG 5 cut(s) 179, 408, 564, 599, 708
BssMI GATC 4 cut(s) 129, 328, 433, 704
BssT1I CCWWGG 1 cut(s) 564
Bst2UI CCWGG 2 cut(s) 117, 409
Bst4CI ACNGT 2 cut(s) 486, 657
Bst6I CTCTTC 2 cut(s) 58, 336
BstDEI CTNAG 1 cut(s) 768
BstF5I GGATG 1 cut(s) 574
BstKTI GATC 4 cut(s) 132, 331, 436, 707
BstMAI GTCTC 2 cut(s) 71, 619
BstMBI GATC 4 cut(s) 129, 328, 433, 704
BstMCI CGRYCG 1 cut(s) 605
BstNI CCWGG 2 cut(s) 117, 409
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 5 cut(s) 115, 178, 407, 707, 708
BstSFI CTRYAG 1 cut(s) 361
BstX2I RGATCY 2 cut(s) 433, 704
BstYI RGATCY 2 cut(s) 433, 704
BstZI CGGCCG 1 cut(s) 602
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 4 cut(s) 178, 220, 275, 604
BtsCI GGATG 1 cut(s) 574
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 3 cut(s) 64, 262, 653
Cfr13I GGNCC 1 cut(s) 445
Cfr9I CCCGGG 1 cut(s) 708
Csp6I GTAC 1 cut(s) 261
CviAII CATG 2 cut(s) 107, 383
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 768
DpnI GATC 4 cut(s) 131, 330, 435, 706
DpnII GATC 4 cut(s) 129, 328, 433, 704
DraIII CACNNNGTG 1 cut(s) 669
EaeI YGGCCR 3 cut(s) 176, 273, 602
EagI CGGCCG 1 cut(s) 602
Eam1104I CTCTTC 2 cut(s) 58, 336
EarI CTCTTC 2 cut(s) 58, 336
EclXI CGGCCG 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 564
Eco31I GGTCTC 1 cut(s) 71
Eco32I GATATC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 445
Eco52I CGGCCG 1 cut(s) 602
Eco88I CYCGRG 1 cut(s) 708
EcoO109I RGGNCCY 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 763
EcoRII CCWGG 2 cut(s) 115, 407
EcoRV GATATC 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 564
Esp3I CGTCTC 1 cut(s) 619
FaeI CATG 2 cut(s) 110, 386
FaiI YATR 9 cut(s) 8, 108, 324, 350, 384, 396, 398, 405, 477
FaqI GGGAC 3 cut(s) 196, 246, 458
FatI CATG 2 cut(s) 106, 382
FbaI TGATCA 1 cut(s) 328
FokI GGATG 1 cut(s) 581
FspBI CTAG 1 cut(s) 729
GsaI CCCAGC 1 cut(s) 85
HaeIII GGCC 4 cut(s) 178, 220, 275, 604
HapII CCGG 2 cut(s) 179, 709
Hin1II CATG 2 cut(s) 110, 386
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 4 cut(s) 50, 548, 650, 677
HpaII CCGG 2 cut(s) 179, 709
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 596
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 4 cut(s) 137, 332, 437, 686
Hpy8I GTNNAC 1 cut(s) 596
Hpy99I CGWCG 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 486, 657
HpyCH4V TGCA 5 cut(s) 191, 197, 363, 380, 720
HpyF3I CTNAG 1 cut(s) 768
Hsp92II CATG 2 cut(s) 110, 386
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 129, 328, 433, 704
LweI GCATC 2 cut(s) 706, 729
MaeI CTAG 1 cut(s) 729
MaeIII GTNAC 1 cut(s) 413
MalI GATC 4 cut(s) 131, 330, 435, 706
MboI GATC 4 cut(s) 129, 328, 433, 704
MboII GAAGA 6 cut(s) 18, 45, 300, 353, 642, 652
MflI RGATCY 2 cut(s) 433, 704
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 9 cut(s) 125, 140, 166, 336, 375, 450, 493, 633, 763
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 602
MnlI CCTC 9 cut(s) 58, 93, 223, 402, 530, 567, 609, 637, 667
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 2 cut(s) 179, 709
MspR9I CCNGG 5 cut(s) 117, 180, 409, 709, 710
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 2 cut(s) 117, 409
NciI CCSGG 3 cut(s) 180, 709, 710
NdeII GATC 4 cut(s) 129, 328, 433, 704
NlaIII CATG 2 cut(s) 110, 386
NlaIV GGNNCC 3 cut(s) 435, 446, 706
NmeAIII GCCGAG 1 cut(s) 580
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 1 cut(s) 386
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 3 cut(s) 548, 650, 677
PfoI TCCNGGA 1 cut(s) 115
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 445
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 115, 407
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 2 cut(s) 115, 407
PspN4I GGNNCC 3 cut(s) 435, 446, 706
PspPI GGNCC 1 cut(s) 445
PspPPI RGGWCCY 1 cut(s) 445
PstI CTGCAG 1 cut(s) 365
PsuI RGATCY 2 cut(s) 433, 704
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
Sau3AI GATC 4 cut(s) 129, 328, 433, 704
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 5 cut(s) 117, 180, 409, 709, 710
SetI ASST 9 cut(s) 13, 92, 159, 355, 410, 422, 450, 601, 730
SfaNI GCATC 2 cut(s) 706, 729
SfcI CTRYAG 1 cut(s) 361
SinI GGWCC 1 cut(s) 445
SmaI CCCGGG 1 cut(s) 710
Sse9I AATT 9 cut(s) 125, 140, 166, 336, 375, 450, 493, 633, 763
SspI AATATT 1 cut(s) 301
SspMI CTAG 1 cut(s) 729
StyD4I CCNGG 5 cut(s) 115, 178, 407, 707, 708
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 2 cut(s) 486, 657
TaqI TCGA 2 cut(s) 136, 559
TasI AATT 9 cut(s) 125, 140, 166, 336, 375, 450, 493, 633, 763
TfiI GAWTC 3 cut(s) 548, 650, 677
TscAI CASTG 3 cut(s) 64, 262, 660
TseFI GTSAC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 3 cut(s) 135, 140, 561
TspMI CCCGGG 1 cut(s) 708
TspRI CASTG 3 cut(s) 64, 262, 660
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 3 cut(s) 140, 493, 763
XceI RCATGY 1 cut(s) 386
XmaI CCCGGG 1 cut(s) 708
XspI CTAG 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.