Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005150

Physical Location & Seq

Genomic Coordinates Reverse (-)

4613051 .. 4614988

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0062000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGATTCGATGCCAAAAAGACTTCTGGAAAACACCTGAACCTGTACTTGAGGACTCAACAGACAGTAGGTGGAAATGGTTTAAGAATTGCTTAGGAGCATTAGATGGAACACATATTAGGGTGAAAGTGTCAGAACGAGACAAGCCAAGATATAGAACAAGGAAATGTGAGATAGCAACTAATGTTTTAGGGGTTTGCTCTCAAGACTTGATGTTTATATATGTTTTACCGGGATGGGAGAGTTCTGCACATGATGCTCGTGTTCTAAGAGATGCTGTGAGTAGGAGAAATGGATTAAAAGATCCTAACGGTTGTTACTATTTAGTAGACGCTGGCTACACCAATGGAAATGGCTTTCTTGCACCTTTTAGAGGACAGCGTTATCATCTAAATGATTGGAGAGATGGATACCGACCTGAGACGGCAGAGGAATTTTTTAACATGAAACATTCAAGTGCTCGAAATGTTATTGAGAGGAGTTTTGGTTTACTGAAAATGCGTTGGGCAATTCTTAGGAGTCCATCATTTTATGATATTACAACACAACGTCGTATAATATCTGTGTGTTGCATGCTCCATAATTTTATTAGAAGAGAGATGGCTATAGATCCTATAGAAGAAGCATTCGATAATCAGCCGGTAGCTGCAATTGAGAACTTGGAAGATGATGACTATGTTAATATAAAGGAAGATGATGTATTGGTCAGTTCTTTATTGGAACTCTACCATGATCCTAAGTGGCGTGCGGATACTGGCTTCAAAAATGGTTACTTGCAGAAATTACAAGATATGATAGAAGCCAAACTTCCAAACTGTGGGATATTGGCAAATCCACACATTGAATCAAGAATAAAGACATTGAAAGGGAAATATGTTGCATTAAGCGAAGCATTATCTCAGAGTGGTTTTGGATGGAATGAAGAAGCAATGATGTTGGATTGTAAAAGAAGTAACAAAAAGGATGCAAAAGGTTTGTATGGTAAACCATTTGAACATTATTATGCCCTTGGAGAGATATATGGAAAAGATCGTGCAATGGGAACAAATGCTGGAAATGCGGAAGATGATGAAGAAGAAGTTAGGGAAGAGGATGCAAGCATGAATCAAGAAGGTGTACGAGCTGATGACTTTTTTGAACAAATGAACATGACTACTGATGGTGGATCTCAGTATAGGGGATCACAATTTGAGGGGCTTGGTGAAACGGAAGATGATGATATATCTTTTATACAACCAAGTCCCCCCCAACCACCAAGTGCCAAGCAACGTGCCAAACAGCAGAGGTCAACTCAAGATGTAGCAAATGCTCCAAATAATACTCGTAGAAAGGCAAGAGCTTTGGATGATATGGCTAAAAAATTTGGAGTGATCACTGAAGCCATTGCAGGAATGGCTCCAAAGTTTGAAGGCTTGATTAATGTTCTCTCAACAGATAAGGATCTTGCTGATATGCAAGGCAAACTTGGTGGTGAGCTGAGGAAAATGGATTTTCTATCTCCATTGCAGGTATTTCACGTTACCAACAAATTAGCTAAAGAGCATGACTTGTTGAGGGTCTTCTTCACCATGACTGATGAGGAAAAGAAGGATTACATAATCAACCTTCTGCAATATGGCCTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

541

Amino Acids

61.86

Weight (kDa)

5.59

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDE_Tnp_1	PF01609	27 - 192	4.3e-09	Transposase DDE domain
Plant_tran	PF04827	27 - 196	1e-06	Plant transposon protein
DDE_Tnp_4	PF13359	34 - 194	1e-24	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470 AT5G01470
fragaria_vesca	FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480 FvH4_6g11480
malus_domestica	MD04G1152000.v1.1
prunus_persica	Prupe.6G277100_v2.0.a1
pyrus_communis	pycom04g13800
rosa_chinensis	RchiOBHm_Chr3g0463171
rosa_laevigata	RLG00000024806
rosa_multiflora	Rmu_sc0001916.1_g000012 Rmu_sc0008079.1_g000006 Rmu_sc0008124.1_g000004
rosa_roxburghii	Rroxscaffold_6G00416860 Rroxscaffold_6G00416910
rosa_rugosa	Rorug03G0061900 Rorug03G0062000
rosa_samantha	Rh3BG124600 Rh3CG126600 Rh3DG125600
rosa_wichuraiana	Rw3G010170 Rw3G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1495
AccB7I	CCANNNNNTGG	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	2 cut(s)	746, 1058
AclWI	GGATC	6 cut(s)	296, 602, 725, 1171, 1186, 1446
AcsI	RAATTY	2 cut(s)	431, 1358
AcuI	CTGAAG	1 cut(s)	1395
AdeI	CACNNNGTG	1 cut(s)	1256
AfaI	GTAC	2 cut(s)	45, 1116
AfiI	CCNNNNNNNGG	2 cut(s)	371, 815
AgsI	TTSAA	7 cut(s)	453, 760, 842, 862, 992, 1136, 1406
AluBI	AGCT	5 cut(s)	644, 1121, 1337, 1474, 1532
AluI	AGCT	5 cut(s)	644, 1121, 1337, 1474, 1532
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	2 cut(s)	132, 413
AlwI	GGATC	6 cut(s)	296, 602, 725, 1171, 1186, 1446
AoxI	GGCC	1 cut(s)	1615
ApeKI	GCWGC	1 cut(s)	644
ApoI	RAATTY	2 cut(s)	431, 1358
AseI	ATTAAT	1 cut(s)	1416
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	4 cut(s)	133, 1211, 1481, 1555
BauI	CACGAG	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	1549
Bbv12I	GWGCWC	1 cut(s)	460
BbvCI	CCTCAGC	1 cut(s)	1475
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	7 cut(s)	98, 228, 398, 529, 592, 906, 1151
BceAI	ACGGC	1 cut(s)	438
BciVI	GTATCC	2 cut(s)	401, 742
BclI	TGATCA	1 cut(s)	1368
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	132, 413
BfmI	CTRYAG	3 cut(s)	603, 612, 1619
BfuAI	ACCTGC	1 cut(s)	1495
BfuI	GTATCC	2 cut(s)	401, 742
BisI	GCNGC	1 cut(s)	645
BlsI	GCNGC	1 cut(s)	646
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	1395
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	4 cut(s)	244, 262, 952, 1081
BpiI	GAAGAC	1 cut(s)	1549
BplI	GAGNNNNNCTC	2 cut(s)	1273, 1305
Bpu10I	CCTNAGC	2 cut(s)	91, 1475
BpuEI	CTTGAG	3 cut(s)	68, 186, 1275
BpuMI	CCSGG	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	1437
BsaJI	CCNNGG	1 cut(s)	1006
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 815
Bse118I	RCCGGY	1 cut(s)	637
Bse1I	ACTGG	1 cut(s)	757
Bse3DI	GCAATG	4 cut(s)	933, 1041, 1380, 1499
Bse8I	GATNNNNATC	1 cut(s)	1437
BseDI	CCNNGG	1 cut(s)	1006
BseGI	GGATG	5 cut(s)	239, 917, 967, 1096, 1348
BseJI	GATNNNNATC	1 cut(s)	1437
BseLI	CCNNNNNNNGG	2 cut(s)	371, 815
BseMI	GCAATG	4 cut(s)	933, 1041, 1380, 1499
BseMII	CTCAG	4 cut(s)	408, 911, 1181, 1466
BseNI	ACTGG	1 cut(s)	757
BseRI	GAGGAG	1 cut(s)	490
BseXI	GCAGC	1 cut(s)	631
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	1617
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	2 cut(s)	230, 638
BslFI	GGGAC	1 cut(s)	1224
BslI	CCNNNNNNNGG	2 cut(s)	371, 815
BsmAI	GTCTC	2 cut(s)	132, 413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	1224
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	1617
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	8 cut(s)	301, 607, 730, 1027, 1163, 1178, 1368, 1438
BspACI	CCGC	2 cut(s)	746, 1058
BspANI	GGCC	1 cut(s)	1617
BspCNI	CTCAG	4 cut(s)	409, 910, 1180, 1467
BspLI	GGNNCC	1 cut(s)	1395
BspMI	ACCTGC	1 cut(s)	1495
BspPI	GGATC	6 cut(s)	296, 602, 725, 1171, 1186, 1446
BsrDI	GCAATG	4 cut(s)	933, 1041, 1380, 1499
BsrFI	RCCGGY	1 cut(s)	637
BsrI	ACTGG	1 cut(s)	757
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	1 cut(s)	1006
BssMI	GATC	8 cut(s)	301, 607, 730, 1027, 1163, 1178, 1368, 1438
BssSI	CACGAG	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	1006
Bst2BI	CACGAG	1 cut(s)	258
Bst4CI	ACNGT	4 cut(s)	65, 311, 815, 1623
Bst6I	CTCTTC	2 cut(s)	586, 1080
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	334, 572, 744, 1096
BstDEI	CTNAG	8 cut(s)	91, 266, 417, 512, 735, 897, 1167, 1475
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstF5I	GGATG	5 cut(s)	239, 917, 967, 1096, 1348
BstKTI	GATC	8 cut(s)	304, 610, 733, 1030, 1166, 1181, 1371, 1441
BstMAI	GTCTC	2 cut(s)	132, 413
BstMBI	GATC	8 cut(s)	301, 607, 730, 1027, 1163, 1178, 1368, 1438
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 1055, 1391
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	3 cut(s)	603, 612, 1619
BstV1I	GCAGC	1 cut(s)	631
BstV2I	GAAGAC	1 cut(s)	1549
BstX2I	RGATCY	4 cut(s)	301, 607, 1163, 1438
BstYI	RGATCY	4 cut(s)	301, 607, 1163, 1438
BsuI	GTATCC	2 cut(s)	401, 742
BsuRI	GGCC	1 cut(s)	1617
BtsCI	GGATG	5 cut(s)	239, 917, 967, 1096, 1348
BtsIMutI	CAGTG	1 cut(s)	1371
BveI	ACCTGC	1 cut(s)	1495
Cac8I	GCNNGC	4 cut(s)	334, 572, 744, 1096
Cfr10I	RCCGGY	1 cut(s)	637
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	44, 1115
CspCI	CAANNNNNGTGG	2 cut(s)	1447, 1482
CviAII	CATG	8 cut(s)	251, 442, 571, 728, 1099, 1147, 1541, 1567
CviQI	GTAC	2 cut(s)	44, 1115
DdeI	CTNAG	8 cut(s)	91, 266, 417, 512, 735, 897, 1167, 1475
DpnI	GATC	8 cut(s)	303, 609, 732, 1029, 1165, 1180, 1370, 1440
DpnII	GATC	8 cut(s)	301, 607, 730, 1027, 1163, 1178, 1368, 1438
DraIII	CACNNNGTG	1 cut(s)	1256
Eam1104I	CTCTTC	2 cut(s)	586, 1080
EarI	CTCTTC	2 cut(s)	586, 1080
Eco130I	CCWWGG	1 cut(s)	1006
Eco57I	CTGAAG	1 cut(s)	1395
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	1006
ErhI	CCWWGG	1 cut(s)	1006
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	8 cut(s)	254, 445, 574, 731, 1102, 1150, 1544, 1570
FalI	AAGNNNNNCTT	6 cut(s)	74, 106, 789, 821, 1446, 1478
FaqI	GGGAC	1 cut(s)	1224
FatI	CATG	8 cut(s)	250, 441, 570, 727, 1098, 1146, 1540, 1566
FbaI	TGATCA	1 cut(s)	1368
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	645
FokI	GGATG	5 cut(s)	246, 924, 974, 1103, 1355
Fsp4HI	GCNGC	1 cut(s)	645
GluI	GCNGC	1 cut(s)	645
HaeIII	GGCC	1 cut(s)	1617
HapII	CCGG	2 cut(s)	230, 638
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	8 cut(s)	254, 445, 574, 731, 1102, 1150, 1544, 1570
HincII	GTYRAC	1 cut(s)	1287
HindII	GTYRAC	1 cut(s)	1287
HinfI	GANTC	5 cut(s)	4, 53, 517, 842, 1102
HpaII	CCGG	2 cut(s)	230, 638
HphI	GGTGA	4 cut(s)	133, 1211, 1481, 1555
Hpy166II	GTNNAC	5 cut(s)	328, 488, 983, 1115, 1287
Hpy188I	TCNGA	2 cut(s)	133, 900
Hpy188III	TCNNGA	5 cut(s)	25, 203, 846, 1106, 1292
Hpy8I	GTNNAC	5 cut(s)	328, 488, 983, 1115, 1287
Hpy99I	CGWCG	1 cut(s)	552
HpyAV	CCTTC	4 cut(s)	1103, 1400, 1579, 1613
HpyCH4III	ACNGT	4 cut(s)	65, 311, 815, 1623
HpyCH4IV	ACGT	3 cut(s)	547, 1267, 1515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 1055, 1391
HpyF3I	CTNAG	8 cut(s)	91, 266, 417, 512, 735, 897, 1167, 1475
HpySE526I	ACGT	3 cut(s)	547, 1267, 1515
Hsp92II	CATG	8 cut(s)	254, 445, 574, 731, 1102, 1150, 1544, 1570
Ksp22I	TGATCA	1 cut(s)	1368
Kzo9I	GATC	8 cut(s)	301, 607, 730, 1027, 1163, 1178, 1368, 1438
LmnI	GCTCC	4 cut(s)	95, 579, 1312, 1399
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	4 cut(s)	244, 262, 952, 1081
MaeII	ACGT	3 cut(s)	547, 1267, 1515
MaeIII	GTNAC	4 cut(s)	314, 767, 950, 1516
MalI	GATC	8 cut(s)	303, 609, 732, 1029, 1165, 1180, 1370, 1440
MboI	GATC	8 cut(s)	301, 607, 730, 1027, 1163, 1178, 1368, 1438
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	4 cut(s)	301, 607, 1163, 1438
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	9 cut(s)	85, 431, 507, 580, 648, 779, 1184, 1358, 1526
MlyI	GAGTC	2 cut(s)	47, 526
MmeI	TCCRAC	1 cut(s)	915
MseI	TTAA	6 cut(s)	81, 296, 438, 678, 881, 1416
MslI	CAYNNNNRTG	3 cut(s)	390, 453, 999
MspI	CCGG	2 cut(s)	230, 638
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	648
Mva1269I	GAATGC	1 cut(s)	623
MwoI	GCNNNNNNNGC	3 cut(s)	254, 1055, 1391
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	8 cut(s)	301, 607, 730, 1027, 1163, 1178, 1368, 1438
NlaIII	CATG	8 cut(s)	254, 445, 574, 731, 1102, 1150, 1544, 1570
NlaIV	GGNNCC	1 cut(s)	1395
NspI	RCATGY	1 cut(s)	574
PaeI	GCATGC	1 cut(s)	574
PctI	GAATGC	1 cut(s)	623
PfeI	GAWTC	3 cut(s)	4, 842, 1102
PflMI	CCANNNNNTGG	1 cut(s)	815
PkrI	GCNGC	1 cut(s)	646
PleI	GAGTC	2 cut(s)	47, 525
PpsI	GAGTC	2 cut(s)	47, 525
PshBI	ATTAAT	1 cut(s)	1416
PspN4I	GGNNCC	1 cut(s)	1395
PsuI	RGATCY	4 cut(s)	301, 607, 1163, 1438
RsaI	GTAC	2 cut(s)	45, 1116
RsaNI	GTAC	2 cut(s)	44, 1115
RseI	CAYNNNNRTG	3 cut(s)	390, 453, 999
SaqAI	TTAA	6 cut(s)	81, 296, 438, 678, 881, 1416
SatI	GCNGC	1 cut(s)	645
Sau3AI	GATC	8 cut(s)	301, 607, 730, 1027, 1163, 1178, 1368, 1438
SchI	GAGTC	2 cut(s)	47, 526
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	4 cut(s)	244, 262, 952, 1081
SfcI	CTRYAG	3 cut(s)	603, 612, 1619
SmiMI	CAYNNNNRTG	3 cut(s)	390, 453, 999
SmlI	CTYRAG	3 cut(s)	47, 201, 1290
SmoI	CTYRAG	3 cut(s)	47, 201, 1290
SphI	GCATGC	1 cut(s)	574
Sse9I	AATT	9 cut(s)	85, 431, 507, 580, 648, 779, 1184, 1358, 1526
SsiI	CCGC	2 cut(s)	746, 1058
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	1006
TaaI	ACNGT	4 cut(s)	65, 311, 815, 1623
TaiI	ACGT	3 cut(s)	550, 1270, 1518
TaqI	TCGA	3 cut(s)	7, 460, 627
TasI	AATT	9 cut(s)	85, 431, 507, 580, 648, 779, 1184, 1358, 1526
TatI	WGTACW	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	4, 842, 1102
Tru1I	TTAA	6 cut(s)	81, 296, 438, 678, 881, 1416
Tru9I	TTAA	6 cut(s)	81, 296, 438, 678, 881, 1416
TscAI	CASTG	1 cut(s)	1378
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	5 cut(s)	458, 933, 1083, 1115, 1157
TspGWI	ACGGA	1 cut(s)	1220
TspRI	CASTG	1 cut(s)	1378
Van91I	CCANNNNNTGG	1 cut(s)	815
VspI	ATTAAT	1 cut(s)	1416
XagI	CCTNNNNNAGG	1 cut(s)	369
XapI	RAATTY	2 cut(s)	431, 1358
XceI	RCATGY	1 cut(s)	574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1387
XmiI	GTMKAC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.