Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010581

Physical Location & Seq

Genomic Coordinates Reverse (-)

11874334 .. 11874957

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCTCTCCGATGCTTCGGCTGCTTCTCTTATGGCTTACAGAGAGGAACCAGCAGCAGCAGCAGCACTATCTTCTCCAGCTTCGGTGTTGATGAACATGGGGCAAACCCTAACCCACATTCAGAGTGGAGTGATCAAGAAGAGGAAAGCCGGGAGGAAGAAGTTCACCGAGACTCGCCACCCGGTGTACAGAGGCGTCAGGCAGAGGAGCGGCAAGTGGGTTTGCGAAATGAGGCAACCGGATCTCAAGAAGTCTCGGGTTTGGCTCGGGACCTTTACTTGTCCTGAAATGGCTGCTAGGGCTTATGATGTAGCAGCTCTTTCTCTGAGAGGTGAATCTGCTGAGCTAAACTTTCCAGAGGAAGCTAAGGCTTCTCCTTCTTCGACTTCGAGTATGTCATTGCTGGAGTTGACGAGTATGGTGAACTTGGAGAACGTAGAAGTAGAGTCGAGGTCCTCAAGGATAGGGTATGTGGATGAGGAGGAGTTGTTTAACATGCCGGAGTTACTTGACAGTTTGGCTGAGGGTTTGATTCTCACTCCCCCAGCCATGCAAAAAGGTTTTAACTGGGATGATTATGATTTGGAGAATGCCGTAGAGTTTTCTCTGTGGAGTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

208

Amino Acids

22.98

Weight (kDa)

5.04

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	61 - 111	7.6e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18090
malus_domestica	MD14G1017200.v1.1
prunus_persica	Prupe.7G115900_v2.0.a1
pyrus_communis	pycom14g01500
rosa_chinensis	RchiOBHm_Chr3g0472361
rosa_laevigata	RLG00000004865 RLG00000014944 RLG00000024085 RLG00000029058
rosa_multiflora	Rmu_sc0000627.1_g000006 Rmu_sc0000798.1_g000019 Rmu_sc0004769.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100500 Rroxscaffold_3G00231020 Rroxscaffold_6G00408990
rosa_rugosa	Rorug03G0124300
rosa_samantha	Rh2DG097700 Rh3BG202500 Rh3DG172700 Rh7CG172300
rosa_wichuraiana	Rw3G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	210
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	195
AdeI	CACNNNGTG	1 cut(s)	184
AfaI	GTAC	1 cut(s)	188
AluBI	AGCT	4 cut(s)	80, 317, 346, 365
AluI	AGCT	4 cut(s)	80, 317, 346, 365
Alw26I	GTCTC	2 cut(s)	164, 258
AlwI	GGATC	1 cut(s)	249
Ama87I	CYCGRG	2 cut(s)	255, 266
ApeKI	GCWGC	7 cut(s)	20, 53, 56, 59, 62, 293, 314
Asp700I	GAANNNNTTC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	270, 453
AsuC2I	CCSGG	2 cut(s)	151, 182
AsuHPI	GGTGA	3 cut(s)	157, 344, 433
AvaI	CYCGRG	2 cut(s)	255, 266
AvaII	GGWCC	2 cut(s)	270, 453
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	7 cut(s)	7, 65, 68, 71, 74, 280, 326
BceAI	ACGGC	1 cut(s)	578
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	2 cut(s)	151, 182
BcoDI	GTCTC	2 cut(s)	164, 258
BfaI	CTAG	1 cut(s)	297
BisI	GCNGC	8 cut(s)	21, 54, 57, 60, 63, 211, 294, 315
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	8 cut(s)	22, 55, 58, 61, 64, 212, 295, 316
Bme1390I	CCNGG	2 cut(s)	151, 182
Bme18I	GGWCC	2 cut(s)	270, 453
BmeT110I	CYCGRG	2 cut(s)	255, 266
BmgT120I	GGNCC	2 cut(s)	270, 453
BmiI	GGNNCC	2 cut(s)	48, 271
BmrFI	CCNGG	2 cut(s)	151, 182
BmrI	ACTGGG	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	577
BpmI	CTGGAG	2 cut(s)	60, 425
Bpu10I	CCTNAGC	2 cut(s)	366, 522
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	230, 442
BpuMI	CCSGG	2 cut(s)	151, 182
BsaHI	GRCGYC	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bse1I	ACTGG	1 cut(s)	572
Bse3DI	GCAATG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	481, 577
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	3 cut(s)	317, 333, 513
BseNI	ACTGG	1 cut(s)	572
BseRI	GAGGAG	3 cut(s)	220, 494, 497
BseXI	GCAGC	7 cut(s)	7, 65, 68, 71, 74, 280, 326
BseYI	CCCAGC	1 cut(s)	544
BsiHKCI	CYCGRG	2 cut(s)	255, 266
BsiSI	CCGG	4 cut(s)	150, 182, 239, 500
BslFI	GGGAC	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	164, 258
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	595
BsoBI	CYCGRG	2 cut(s)	255, 266
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	132, 241
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	1 cut(s)	210
BspCNI	CTCAG	3 cut(s)	318, 334, 514
BspLI	GGNNCC	2 cut(s)	48, 271
BspPI	GGATC	1 cut(s)	249
BsrBI	CCGCTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	572
BssMI	GATC	2 cut(s)	132, 241
BssNI	GRCGYC	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	186
BstDEI	CTNAG	4 cut(s)	326, 342, 366, 522
BstF5I	GGATG	2 cut(s)	481, 577
BstKTI	GATC	2 cut(s)	135, 244
BstMAI	GTCTC	2 cut(s)	164, 258
BstMBI	GATC	2 cut(s)	132, 241
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 59, 62, 299
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	2 cut(s)	149, 180
BstV1I	GCAGC	7 cut(s)	7, 65, 68, 71, 74, 280, 326
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	481, 577
Cfr13I	GGNCC	2 cut(s)	270, 453
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	97, 496, 550
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	326, 342, 366, 522
DpnI	GATC	2 cut(s)	134, 243
DpnII	GATC	2 cut(s)	132, 241
DraIII	CACNNNGTG	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	270, 453
Eco88I	CYCGRG	2 cut(s)	255, 266
EcoO109I	RGGNCCY	2 cut(s)	270, 453
FaeI	CATG	3 cut(s)	100, 499, 553
FaiI	YATR	9 cut(s)	32, 98, 306, 395, 419, 471, 497, 551, 579
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	3 cut(s)	96, 495, 549
FbaI	TGATCA	1 cut(s)	132
Fnu4HI	GCNGC	8 cut(s)	21, 54, 57, 60, 63, 211, 294, 315
FokI	GGATG	2 cut(s)	488, 584
Fsp4HI	GCNGC	8 cut(s)	21, 54, 57, 60, 63, 211, 294, 315
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	8 cut(s)	21, 54, 57, 60, 63, 211, 294, 315
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	2 cut(s)	60, 425
HapII	CCGG	4 cut(s)	150, 182, 239, 500
HgaI	GACGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	100, 499, 553
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	4 cut(s)	172, 335, 446, 532
HpaII	CCGG	4 cut(s)	150, 182, 239, 500
HphI	GGTGA	3 cut(s)	157, 344, 433
Hpy166II	GTNNAC	4 cut(s)	165, 187, 411, 424
Hpy188I	TCNGA	3 cut(s)	10, 123, 327
Hpy188III	TCNNGA	5 cut(s)	136, 247, 268, 284, 356
Hpy8I	GTNNAC	4 cut(s)	165, 187, 411, 424
HpyAV	CCTTC	1 cut(s)	387
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 59, 62, 299
HpyF3I	CTNAG	4 cut(s)	326, 342, 366, 522
HpySE526I	ACGT	1 cut(s)	435
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	100, 499, 553
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	132, 241
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	7 cut(s)	7, 65, 68, 71, 74, 280, 326
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	504
MalI	GATC	2 cut(s)	134, 243
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	2 cut(s)	132, 241
MboII	GAAGA	4 cut(s)	63, 151, 169, 372
MflI	RGATCY	1 cut(s)	241
MlyI	GAGTC	2 cut(s)	166, 455
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	3 cut(s)	492, 564, 622
MspI	CCGG	4 cut(s)	150, 182, 239, 500
MspR9I	CCNGG	2 cut(s)	151, 182
Mva1269I	GAATGC	1 cut(s)	595
MwoI	GCNNNNNNNGC	4 cut(s)	20, 59, 62, 299
NciI	CCSGG	2 cut(s)	151, 182
NdeII	GATC	2 cut(s)	132, 241
NlaIII	CATG	3 cut(s)	100, 499, 553
NlaIV	GGNNCC	2 cut(s)	48, 271
NspI	RCATGY	1 cut(s)	499
PctI	GAATGC	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	335, 532
PkrI	GCNGC	8 cut(s)	22, 55, 58, 61, 64, 212, 295, 316
PleI	GAGTC	2 cut(s)	166, 454
PpsI	GAGTC	2 cut(s)	166, 454
PpuMI	RGGWCCY	2 cut(s)	270, 453
Psp5II	RGGWCCY	2 cut(s)	270, 453
PspFI	CCCAGC	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	48, 271
PspPI	GGNCC	2 cut(s)	270, 453
PspPPI	RGGWCCY	2 cut(s)	270, 453
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	492, 564, 622
SatI	GCNGC	8 cut(s)	21, 54, 57, 60, 63, 211, 294, 315
Sau3AI	GATC	2 cut(s)	132, 241
Sau96I	GGNCC	2 cut(s)	270, 453
SchI	GAGTC	2 cut(s)	166, 455
ScrFI	CCNGG	2 cut(s)	151, 182
SetI	ASST	9 cut(s)	82, 275, 319, 334, 348, 367, 438, 455, 562
SinI	GGWCC	2 cut(s)	270, 453
SmlI	CTYRAG	2 cut(s)	245, 457
SmoI	CTYRAG	2 cut(s)	245, 457
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	149, 180
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	3 cut(s)	383, 389, 449
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	335, 532
Tru1I	TTAA	3 cut(s)	492, 564, 622
Tru9I	TTAA	3 cut(s)	492, 564, 622
TseI	GCWGC	7 cut(s)	20, 53, 56, 59, 62, 293, 314
TspDTI	ATGAA	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	270, 453
XceI	RCATGY	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.