Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010581

Physical Location & Seq

Genomic Coordinates Forward (+)

32101794 .. 32104237

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029058

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTCAAGAATGACCTGGAGCAGCTTAAGCAGACTGTCAGGCAGCTTTCAGATGAACATAAAAAGCGGAAGCATGCAAAATATGGTCTTCCTGAGAGCGGATCCGATTTGGATCGCTGGGATTTGAGAGAAGTGGCTGAGGAGATCACGGTTGATGGCAAGCAGTGGTCTGGTACTCTTTGGCGGGGTCGGCGAATGACGTTGCTATCTCGGGGCTGGTTGAAAGTCGCTGGTTTAGGAGCAATGTCGGGATCATGCGAAGTCAGTAGCGGAGGGACGATGGATGACCTGCTCTGGTTTGGATCTATAGGTGATCCCATATCTGATTTGGGTAGAATGATGGCCAGTAGCTTTGGTTGCGAGGCTGGTGGAGCGCTGATGTTGGCGGCGACCCGAAATAGGACACACTGCTGCCGAGCTCGACCTGCCTGCTCCTCCCCCTACATACTGAGCACTGTAACGAGCCCGAACTGCAGCTCAAACCTCCGACCCAGATCTATCCTAGTCGTTCAATCTCGCCACTTCGCCTTTCCGGAGGGTTGCGAAGACGACGAAGATCGCTGCGATATGGCTGGAGGAGCCATGATCGATCATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

21.92

Weight (kDa)

6.51

Isoelectric Point (pI)

60.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18090
malus_domestica	MD14G1017200.v1.1
prunus_persica	Prupe.7G115900_v2.0.a1
pyrus_communis	pycom14g01500
rosa_chinensis	RchiOBHm_Chr3g0472361
rosa_laevigata	RLG00000004865 RLG00000014944 RLG00000024085 RLG00000029058
rosa_multiflora	Rmu_sc0000627.1_g000006 Rmu_sc0000798.1_g000019 Rmu_sc0004769.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100500 Rroxscaffold_3G00231020 Rroxscaffold_6G00408990
rosa_rugosa	Rorug03G0124300
rosa_samantha	Rh2DG097700 Rh3BG202500 Rh3DG172700 Rh7CG172300
rosa_wichuraiana	Rw3G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	297, 433
AccBSI	CCGCTC	1 cut(s)	99
AccIII	TCCGGA	1 cut(s)	532
AciI	CCGC	5 cut(s)	67, 99, 184, 270, 386
AclWI	GGATC	6 cut(s)	96, 109, 120, 259, 308, 310
AcoI	YGGCCR	1 cut(s)	342
AfaI	GTAC	1 cut(s)	175
AfeI	AGCGCT	1 cut(s)	375
AfiI	CCNNNNNNNGG	2 cut(s)	98, 399
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	7, 223, 512
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	5 cut(s)	25, 46, 351, 419, 477
AluI	AGCT	5 cut(s)	25, 46, 351, 419, 477
Alw21I	GWGCWC	2 cut(s)	421, 455
AlwI	GGATC	6 cut(s)	96, 109, 120, 259, 308, 310
Ama87I	CYCGRG	1 cut(s)	210
Aor13HI	TCCGGA	1 cut(s)	532
Aor51HI	AGCGCT	1 cut(s)	375
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	5 cut(s)	22, 43, 411, 474, 561
AspLEI	GCGC	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	101
BanII	GRGCYC	2 cut(s)	421, 467
BbsI	GAAGAC	2 cut(s)	80, 552
Bbv12I	GWGCWC	2 cut(s)	421, 455
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	5 cut(s)	34, 55, 398, 486, 548
BccI	CCATC	3 cut(s)	149, 274, 334
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BciT130I	CCWGG	1 cut(s)	17
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	2 cut(s)	306, 472
BfoI	RGCGCY	1 cut(s)	377
BfrI	CTTAAG	1 cut(s)	26
BfuAI	ACCTGC	2 cut(s)	297, 433
BglII	AGATCT	1 cut(s)	494
BisI	GCNGC	6 cut(s)	23, 44, 387, 412, 475, 562
BlsI	GCNGC	6 cut(s)	24, 45, 388, 413, 476, 563
Bme1390I	CCNGG	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	103, 580
BmrFI	CCNGG	1 cut(s)	17
BpiI	GAAGAC	2 cut(s)	80, 552
BpmI	CTGGAG	2 cut(s)	38, 594
Bpu10I	CCTNAGC	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	588
BsaBI	GATNNNNATC	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 399
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	17
BseCI	ATCGAT	1 cut(s)	588
BseGI	GGATG	1 cut(s)	289
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	98, 399
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	3 cut(s)	84, 129, 440
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	3 cut(s)	155, 424, 591
BseXI	GCAGC	5 cut(s)	34, 55, 398, 486, 548
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	588
BsiHKAI	GWGCWC	2 cut(s)	421, 455
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	98, 399
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	344
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	3 cut(s)	421, 455, 467
Bsp13I	TCCGGA	1 cut(s)	532
BspACI	CCGC	5 cut(s)	67, 99, 184, 270, 386
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	3 cut(s)	85, 130, 441
BspDI	ATCGAT	1 cut(s)	588
BspEI	TCCGGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	103, 580
BspMAI	CTGCAG	1 cut(s)	476
BspMI	ACCTGC	2 cut(s)	297, 433
BspPI	GGATC	6 cut(s)	96, 109, 120, 259, 308, 310
BspTI	CTTAAG	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	3 cut(s)	37, 151, 457
BstAFI	CTTAAG	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	75, 161, 430
BstDEI	CTNAG	3 cut(s)	93, 138, 449
BstF5I	GGATG	1 cut(s)	289
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	7 cut(s)	28, 190, 357, 371, 425, 471, 578
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	2 cut(s)	306, 472
BstV1I	GCAGC	5 cut(s)	34, 55, 398, 486, 548
BstV2I	GAAGAC	2 cut(s)	80, 552
BstX2I	RGATCY	3 cut(s)	101, 302, 494
BstYI	RGATCY	3 cut(s)	101, 302, 494
Bsu15I	ATCGAT	1 cut(s)	588
BsuRI	GGCC	1 cut(s)	344
BsuTUI	ATCGAT	1 cut(s)	588
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	2 cut(s)	170, 406
BtsIMutI	CAGTG	3 cut(s)	170, 406, 453
BveI	ACCTGC	2 cut(s)	297, 433
Cac8I	GCNNGC	3 cut(s)	75, 161, 430
CfoI	GCGC	1 cut(s)	376
ClaI	ATCGAT	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	3 cut(s)	74, 255, 583
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	3 cut(s)	93, 138, 449
EaeI	YGGCCR	1 cut(s)	342
Ecl136II	GAGCTC	1 cut(s)	419
Eco24I	GRGCYC	2 cut(s)	421, 467
Eco47III	AGCGCT	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	421, 467
FaeI	CATG	3 cut(s)	77, 258, 586
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	3 cut(s)	73, 254, 582
FauI	CCCGC	1 cut(s)	177
Fnu4HI	GCNGC	6 cut(s)	23, 44, 387, 412, 475, 562
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	2 cut(s)	421, 467
Fsp4HI	GCNGC	6 cut(s)	23, 44, 387, 412, 475, 562
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	6 cut(s)	23, 44, 387, 412, 475, 562
GsaI	CCCAGC	1 cut(s)	121
GsuI	CTGGAG	2 cut(s)	38, 594
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	1 cut(s)	533
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	3 cut(s)	77, 258, 586
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HpaII	CCGG	1 cut(s)	533
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	4 cut(s)	52, 106, 325, 488
Hpy188III	TCNNGA	4 cut(s)	7, 92, 249, 533
Hpy99I	CGWCG	1 cut(s)	554
HpyCH4III	ACNGT	3 cut(s)	37, 151, 457
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	77, 474
HpyF10VI	GCNNNNNNNGC	7 cut(s)	28, 190, 357, 371, 425, 471, 578
HpyF3I	CTNAG	3 cut(s)	93, 138, 449
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	77, 258, 586
HspAI	GCGC	1 cut(s)	374
Kpn2I	TCCGGA	1 cut(s)	532
LmnI	GCTCC	5 cut(s)	19, 239, 371, 437, 578
Lsp1109I	GCAGC	5 cut(s)	34, 55, 398, 486, 548
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	457
MbiI	CCGCTC	1 cut(s)	99
MboII	GAAGA	3 cut(s)	80, 557, 566
MflI	RGATCY	3 cut(s)	101, 302, 494
MhlI	GDGCHC	3 cut(s)	421, 455, 467
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	1 cut(s)	595
MluNI	TGGCCA	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	7 cut(s)	133, 266, 355, 445, 494, 529, 569
Mox20I	TGGCCA	1 cut(s)	344
MroI	TCCGGA	1 cut(s)	532
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	344
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	7 cut(s)	28, 190, 357, 371, 425, 471, 578
NlaIII	CATG	3 cut(s)	77, 258, 586
NlaIV	GGNNCC	2 cut(s)	103, 580
NmeAIII	GCCGAG	1 cut(s)	440
NspI	RCATGY	1 cut(s)	77
PaeI	GCATGC	1 cut(s)	77
PkrI	GCNGC	6 cut(s)	24, 45, 388, 413, 476, 563
Psp124BI	GAGCTC	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	103, 580
PstI	CTGCAG	1 cut(s)	476
PsuI	RGATCY	3 cut(s)	101, 302, 494
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	421
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	6 cut(s)	23, 44, 387, 412, 475, 562
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	3 cut(s)	421, 455, 467
SfcI	CTRYAG	2 cut(s)	306, 472
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	1 cut(s)	595
SsiI	CCGC	5 cut(s)	67, 99, 184, 270, 386
SspMI	CTAG	1 cut(s)	503
SstI	GAGCTC	1 cut(s)	421
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	3 cut(s)	37, 151, 457
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	2 cut(s)	421, 588
TasI	AATT	1 cut(s)	595
TauI	GCSGC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	3 cut(s)	170, 413, 460
TseI	GCWGC	5 cut(s)	22, 43, 411, 474, 561
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	3 cut(s)	170, 413, 460
Vha464I	CTTAAG	1 cut(s)	26
XceI	RCATGY	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.